Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g043310 Amaranthus hybridus HOM05D000003 ORTHO05D000167 8.5e-84 313.5 149 100.0
Ah.12g061120 Amaranthus hybridus HOM05D000003 ORTHO05D000167 8.3e-39 164.1 142 55.6
Ah.12g061370 Amaranthus hybridus HOM05D000003 ORTHO05D000167 2.2e-31 139.4 135 48.1
Ah.02g115360 Amaranthus hybridus HOM05D003152 ORTHO05D004094 3.8e-31 138.7 118 59.3
Ah.15g100300 Amaranthus hybridus HOM05D000003 ORTHO05D000167 5.4e-30 134.8 121 55.4
Ah.07g198050 Amaranthus hybridus HOM05D000003 ORTHO05D008897 4.9e-23 111.7 120 42.5
Ah.01g010200 Amaranthus hybridus HOM05D000003 ORTHO05D000167 2.4e-22 109.4 133 41.4
Ah.06g188390 Amaranthus hybridus HOM05D000003 ORTHO05D000004 3.5e-21 105.5 100 49.0
Ah.07g205700 Amaranthus hybridus HOM05D000003 ORTHO05D000004 1.4e-17 93.6 91 46.2
Ah.07g196650 Amaranthus hybridus HOM05D000003 ORTHO05D006737 9.9e-16 87.4 55 74.5
Ah.04g156440 Amaranthus hybridus HOM05D000003 ORTHO05D008897 1.7e-15 86.7 141 37.6
EL10Ac5g12187 Beta vulgaris HOM05D000003 ORTHO05D000006 4.9e-15 85.1 141 37.6
Ah.11g041700 Amaranthus hybridus HOM05D000003 ORTHO05D016463 6.4e-15 84.7 68 52.9
EL10Ac7g16695 Beta vulgaris HOM05D000003 ORTHO05D000006 1.2e-13 80.5 141 36.9
Ah.02g120210 Amaranthus hybridus HOM05D000003 ORTHO05D000167 3.0e-12 75.9 93 40.9
Ah.08g219170 Amaranthus hybridus HOM05D000003 ORTHO05D000004 3.9e-12 75.5 140 31.4
CANSAT11G1907 Cannabis sativa HOM05D000003 ORTHO05D000167 8.7e-12 74.3 145 29.7
CANSAT78G0894 Cannabis sativa HOM05D000003 ORTHO05D000167 1.6e-10 70.1 128 35.2
Ah.03g140860 Amaranthus hybridus HOM05D000003 ORTHO05D000004 8.1e-10 67.8 156 29.5
CANSAT01G1191 Cannabis sativa HOM05D000003 ORTHO05D000167 1.4e-09 67.0 127 36.2
CANSAT01G2140 Cannabis sativa HOM05D000003 ORTHO05D000167 1.4e-09 67.0 127 36.2
CANSAT80G0199 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-09 67.0 151 32.5
CANSAT56G4436 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-09 66.6 152 33.6
QL07p038559 Quercus lobata HOM05D000003 ORTHO05D000167 3.1e-09 65.9 131 28.2
TAR131G0003 Trochodendron aralioides HOM05D000003 ORTHO05D011990 3.1e-09 65.9 115 35.7
CANSAT01G0458 Cannabis sativa HOM05D000003 ORTHO05D000167 4.0e-09 65.5 131 31.3
CANSAT11G0809 Cannabis sativa HOM05D000003 ORTHO05D000167 4.0e-09 65.5 131 30.5
CANSAT35G1027 Cannabis sativa HOM05D000003 ORTHO05D000004 4.0e-09 65.5 162 31.5
Dinv14511 Davidia involucrata HOM05D002972 ORTHO05D002272 4.0e-09 65.5 139 32.4
CANSAT80G0405 Cannabis sativa HOM05D000003 ORTHO05D000004 5.3e-09 65.1 136 30.9
CANSAT11G0149 Cannabis sativa HOM05D000003 ORTHO05D000167 6.9e-09 64.7 127 32.3
FvH4_3g02851 Fragaria vesca HOM05D013659 ORTHO05D012679 6.9e-09 64.7 140 30.7
Lj6g0004382 Lotus japonicus HOM05D000003 ORTHO05D000004 6.9e-09 64.7 125 32.8
CANSAT21G2025 Cannabis sativa HOM05D000003 ORTHO05D000167 9.0e-09 64.3 128 32.8
CANSAT54G1379 Cannabis sativa HOM05D000003 ORTHO05D000167 9.0e-09 64.3 127 32.3
Atru.chr1.2640 Acer truncatum HOM05D000003 ORTHO05D000126 1.5e-08 63.5 127 29.9
CANSAT11G0460 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-08 63.5 149 32.9
CANSAT78G2409 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-08 63.5 128 32.8
RcHm_v2.0_Chr5g0016681 Rosa chinensis HOM05D000003 ORTHO05D000004 1.5e-08 63.5 144 32.6
CANSAT25G1969 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-08 63.2 128 33.6
CANSAT78G2124 Cannabis sativa HOM05D000003 ORTHO05D000004 2.0e-08 63.2 128 33.6
CiPaw.09G154700 Carya illinoinensis HOM05D000003 ORTHO05D000167 2.0e-08 63.2 120 32.5
Atru.chr9.887 Acer truncatum HOM05D000003 ORTHO05D000006 2.6e-08 62.8 137 29.9
Ah.04g154180 Amaranthus hybridus HOM05D000003 ORTHO05D006737 3.4e-08 62.4 59 49.2
CANSAT11G2368 Cannabis sativa HOM05D000003 ORTHO05D000167 3.4e-08 62.4 127 35.4
CANSAT56G0354 Cannabis sativa HOM05D000003 ORTHO05D000167 3.4e-08 62.4 127 33.9
FvH4_3g32111 Fragaria vesca HOM05D000003 ORTHO05D000004 3.4e-08 62.4 133 30.1
vmacro12951 Vaccinium macrocarpon HOM05D002252 ORTHO05D002451 3.4e-08 62.4 125 32.0
CANSAT56G3244 Cannabis sativa HOM05D000003 ORTHO05D000167 4.5e-08 62.0 132 33.3
PSO063G1165 Papaver somniferum HOM05D008740 ORTHO05D006738 4.5e-08 62.0 139 28.8
AUR62034035 Chenopodium quinoa HOM05D000003 ORTHO05D000006 5.8e-08 61.6 128 30.5
PSO541G3800 Papaver somniferum HOM05D008740 ORTHO05D006738 5.8e-08 61.6 131 29.8
PSO017G3608 Papaver somniferum HOM05D008740 ORTHO05D006738 7.6e-08 61.2 141 29.1
BraA07t28107Z Brassica rapa HOM05D000003 ORTHO05D001498 9.9e-08 60.8 130 29.2
CSS0043774 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 9.9e-08 60.8 142 30.3
CANSAT21G0505 Cannabis sativa HOM05D000003 ORTHO05D000167 9.9e-08 60.8 123 34.1
CANSAT54G2762 Cannabis sativa HOM05D000003 ORTHO05D000004 9.9e-08 60.8 120 30.0
QL04p096329 Quercus lobata HOM05D000003 ORTHO05D000167 9.9e-08 60.8 130 33.1
Aa31LG1G4180 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.3e-07 60.5 132 25.8
Aa31LG7G2740 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.3e-07 60.5 121 28.9
Ah.02g119600 Amaranthus hybridus HOM05D000003 ORTHO05D006737 1.3e-07 60.5 59 49.2
CANSAT64G0247 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-07 60.5 120 30.0
Cc11_g00430 Coffea canephora HOM05D000003 ORTHO05D000167 1.3e-07 60.5 133 32.3
PSO170G5060 Papaver somniferum HOM05D007979 ORTHO05D008897 1.3e-07 60.5 138 31.9
SEGI_22869 Sequoiadendron giganteum HOM05D013614 ORTHO05D000022 1.3e-07 60.5 80 40.0
Atru.chr2.1933 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-07 60.1 126 30.2
Aqoxy3G02220 Aquilegia oxysepala HOM05D009330 ORTHO05D001026 1.7e-07 60.1 133 31.6
CANSAT11G0945 Cannabis sativa HOM05D000003 ORTHO05D000167 1.7e-07 60.1 113 33.6
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.7e-07 60.1 96 34.4
CANSAT21G1403 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-07 59.7 120 32.5
QL04p013142 Quercus lobata HOM05D000003 ORTHO05D000167 2.2e-07 59.7 129 29.5
RcHm_v2.0_Chr3g0481921 Rosa chinensis HOM05D000003 ORTHO05D000004 2.2e-07 59.7 134 29.9
Sed0008336 Sechium edule HOM05D000003 ORTHO05D000004 2.2e-07 59.7 140 27.1
CANSAT25G3224 Cannabis sativa HOM05D000003 ORTHO05D000167 2.9e-07 59.3 117 29.1
CANSAT35G0981 Cannabis sativa HOM05D000003 ORTHO05D000167 2.9e-07 59.3 130 28.5
QL04p096362 Quercus lobata HOM05D000003 ORTHO05D000004 2.9e-07 59.3 122 32.0
CANSAT01G0905 Cannabis sativa HOM05D000003 ORTHO05D000167 3.8e-07 58.9 128 33.6
CANSAT01G2509 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-07 58.9 129 30.2
CANSAT21G0988 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-07 58.9 128 28.9
COL.COLO4_20835 Corchorus olitorius HOM05D000003 ORTHO05D000022 3.8e-07 58.9 131 30.5
CANSAT25G3211 Cannabis sativa HOM05D000003 ORTHO05D000167 4.9e-07 58.5 140 29.3
Lj3g0003452 Lotus japonicus HOM05D000003 ORTHO05D000004 4.9e-07 58.5 127 29.1
RcHm_v2.0_Chr7g0206951 Rosa chinensis HOM05D013659 ORTHO05D012679 4.9e-07 58.5 129 30.2
TPR.G12197 Trifolium pratense HOM05D000147 ORTHO05D004093 4.9e-07 58.5 129 31.8
CANSAT80G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 6.4e-07 58.2 131 33.6
QL11p009033 Quercus lobata HOM05D000003 ORTHO05D000004 6.4e-07 58.2 129 27.9
vmacro01820 Vaccinium macrocarpon HOM05D001647 ORTHO05D001191 6.4e-07 58.2 124 29.8
CANSAT01G0793 Cannabis sativa HOM05D000003 ORTHO05D000004 8.4e-07 57.8 131 32.1
CANSAT21G1065 Cannabis sativa HOM05D000003 ORTHO05D000167 8.4e-07 57.8 129 32.6
CANSAT25G0727 Cannabis sativa HOM05D000003 ORTHO05D000004 8.4e-07 57.8 127 29.1
CANSAT64G1116 Cannabis sativa HOM05D000003 ORTHO05D000004 8.4e-07 57.8 128 32.0
CANSAT78G0730 Cannabis sativa HOM05D000003 ORTHO05D000004 8.4e-07 57.8 131 33.6
CANSAT80G2601 Cannabis sativa HOM05D000003 ORTHO05D000004 8.4e-07 57.8 128 32.0
Aa31sc113G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.1e-06 57.4 139 28.8
CANSAT56G2281 Cannabis sativa HOM05D000003 ORTHO05D000167 1.1e-06 57.4 131 33.6
CANSAT56G3812 Cannabis sativa HOM05D000003 ORTHO05D000167 1.1e-06 57.4 123 33.3
CiPaw.07G069100 Carya illinoinensis HOM05D000003 ORTHO05D000167 1.1e-06 57.4 126 31.0
FAN04G0275 Fragaria x ananassa HOM05D011824 ORTHO05D017030 1.1e-06 57.4 68 42.6
PSO675G3299 Papaver somniferum HOM05D003407 ORTHO05D001026 1.1e-06 57.4 100 30.0
QL04p021054 Quercus lobata HOM05D000688 ORTHO05D005697 1.1e-06 57.4 138 29.7
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 1.1e-06 57.4 117 32.5
Aa31LG4G10800 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.4e-06 57.0 121 28.1
CANSAT64G2795 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-06 57.0 129 27.1
AUR62014610 Chenopodium quinoa HOM05D000003 ORTHO05D011948 1.4e-06 57.0 125 31.2
Cc04_g14660 Coffea canephora HOM05D000003 ORTHO05D000167 1.4e-06 57.0 135 28.1
PSO443G0019 Papaver somniferum HOM05D000003 ORTHO05D001026 1.4e-06 57.0 144 27.1
PSO699G0051 Papaver somniferum HOM05D008740 ORTHO05D006738 1.4e-06 57.0 147 27.9
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 1.4e-06 57.0 128 32.0
RcHm_v2.0_Chr7g0227851 Rosa chinensis HOM05D008833 ORTHO05D000167 1.4e-06 57.0 118 29.7
Ah.04g163270 Amaranthus hybridus HOM05D000003 ORTHO05D000167 1.9e-06 56.6 92 33.7
Aqoxy1G03455 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.9e-06 56.6 128 31.2
CANSAT25G1903 Cannabis sativa HOM05D000003 ORTHO05D000167 1.9e-06 56.6 132 31.1
CANSAT78G0463 Cannabis sativa HOM05D000003 ORTHO05D000167 1.9e-06 56.6 73 42.5
Rhsim10G0105300 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.9e-06 56.6 138 31.2
CANSAT01G2388 Cannabis sativa HOM05D000003 ORTHO05D000004 2.4e-06 56.2 136 30.9
CANSAT35G0331 Cannabis sativa HOM05D000003 ORTHO05D000004 2.4e-06 56.2 131 29.0
FvH4_2g04612 Fragaria vesca HOM05D008133 ORTHO05D009449 2.4e-06 56.2 76 43.4
Atru.chr10.239 Acer truncatum HOM05D000003 ORTHO05D000167 3.2e-06 55.8 121 33.1
Aa31LG11G8620 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.2e-06 55.8 113 28.3
Aa31sc17G80 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.2e-06 55.8 139 28.8
Ah.15g097350 Amaranthus hybridus HOM05D000003 ORTHO05D000004 3.2e-06 55.8 54 46.3
Aqoxy5G00081 Aquilegia oxysepala HOM05D000155 ORTHO05D000022 3.2e-06 55.8 125 31.2
CANSAT35G1818 Cannabis sativa HOM05D000003 ORTHO05D000167 3.2e-06 55.8 125 32.8
CANSAT54G0632 Cannabis sativa HOM05D000003 ORTHO05D000004 3.2e-06 55.8 129 34.1
AUR62034466 Chenopodium quinoa HOM05D009702 ORTHO05D000004 3.2e-06 55.8 143 30.1
PSO478G2639 Papaver somniferum HOM05D008740 ORTHO05D006738 3.2e-06 55.8 121 31.4
QL01p036379 Quercus lobata HOM05D000003 ORTHO05D000004 3.2e-06 55.8 136 28.7
QL01p037342 Quercus lobata HOM05D000003 ORTHO05D011877 3.2e-06 55.8 135 28.9
RcHm_v2.0_Chr4g0402201 Rosa chinensis HOM05D000003 ORTHO05D000004 3.2e-06 55.8 117 29.9
TPR.G26136 Trifolium pratense HOM05D000147 ORTHO05D001254 3.2e-06 55.8 127 30.7
vmacro03056 Vaccinium macrocarpon HOM05D000511 ORTHO05D000413 3.2e-06 55.8 121 32.2
Atru.chr8.605 Acer truncatum HOM05D000003 ORTHO05D000167 4.2e-06 55.5 130 26.9
Ah.11g043000 Amaranthus hybridus HOM05D000003 ORTHO05D006737 4.2e-06 55.5 58 48.3
CSS0031820 Camellia sinensis var. sinensis HOM05D000698 ORTHO05D000004 4.2e-06 55.5 125 32.0
CANSAT01G1633 Cannabis sativa HOM05D000003 ORTHO05D000167 4.2e-06 55.5 126 34.9
CANSAT11G0329 Cannabis sativa HOM05D000003 ORTHO05D000004 4.2e-06 55.5 135 29.6
CANSAT21G1260 Cannabis sativa HOM05D000003 ORTHO05D000167 4.2e-06 55.5 140 30.0
CANSAT25G2167 Cannabis sativa HOM05D000003 ORTHO05D000167 4.2e-06 55.5 142 28.9
QL04p079912 Quercus lobata HOM05D000003 ORTHO05D000167 4.2e-06 55.5 145 26.2
Aa31LG11G4970 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.5e-06 55.1 124 27.4
BcaC05g28305 Brassica carinata HOM05D000003 ORTHO05D001091 5.5e-06 55.1 118 29.7
CANSAT56G1334 Cannabis sativa HOM05D000003 ORTHO05D000167 5.5e-06 55.1 136 29.4
CANSAT56G2299 Cannabis sativa HOM05D000003 ORTHO05D000004 5.5e-06 55.1 124 31.5
AUR62024163 Chenopodium quinoa HOM05D000003 ORTHO05D000167 5.5e-06 55.1 128 31.2
COL.COLO4_23207 Corchorus olitorius HOM05D009774 ORTHO05D000167 5.5e-06 55.1 128 28.1
Lj1g0019137 Lotus japonicus HOM05D000003 ORTHO05D007254 5.5e-06 55.1 102 28.4
PSO170G3074 Papaver somniferum HOM05D000003 ORTHO05D001026 5.5e-06 55.1 152 25.0
Rhsim01G0175900 Rhododendron simsii HOM05D001813 ORTHO05D026101 5.5e-06 55.1 142 31.0
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 5.5e-06 55.1 136 29.4
Atru.chr5.2695 Acer truncatum HOM05D000003 ORTHO05D000167 7.1e-06 54.7 149 28.9
CANSAT64G0681 Cannabis sativa HOM05D000003 ORTHO05D000167 7.1e-06 54.7 146 27.4
CANSAT64G1939 Cannabis sativa HOM05D000003 ORTHO05D000004 7.1e-06 54.7 131 29.0
COL.COLO4_37225 Corchorus olitorius HOM05D000003 ORTHO05D000126 7.1e-06 54.7 119 30.3
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 7.1e-06 54.7 129 34.1
MBI05_g32513_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 7.1e-06 54.7 138 32.6
Medtr6g453270 Medicago truncatula HOM05D000147 ORTHO05D004093 7.1e-06 54.7 142 29.6
CANSAT01G0281 Cannabis sativa HOM05D000003 ORTHO05D000167 9.3e-06 54.3 97 36.1
CANSAT01G2358 Cannabis sativa HOM05D000003 ORTHO05D000167 9.3e-06 54.3 124 29.0
FvH4_4g05481 Fragaria vesca HOM05D008133 ORTHO05D009449 9.3e-06 54.3 67 41.8
FAN05G2878 Fragaria x ananassa HOM05D003297 ORTHO05D004027 9.3e-06 54.3 65 47.7
Lj6A646G78 Lonicera japonica HOM05D000003 ORTHO05D000167 9.3e-06 54.3 107 30.8
QL06p030629 Quercus lobata HOM05D000003 ORTHO05D000167 9.3e-06 54.3 123 27.6


User provided reference genes

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