Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1672.9 851 100.0
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1447.2 860 85.0
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1436.0 884 82.8
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1429.8 834 85.7
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1344.7 837 79.9
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1342.8 837 80.0
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1335.1 841 78.4
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1334.3 838 80.0
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1332.0 830 80.4
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1330.1 830 80.0
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1329.7 831 79.9
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1327.4 861 78.2
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1325.5 838 79.5
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1324.3 837 79.2
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1323.9 862 77.1
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1322.8 842 79.1
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1321.6 838 79.4
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1320.8 843 78.9
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1317.8 863 77.3
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1317.4 862 76.9
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1313.9 812 81.7
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1313.9 862 76.9
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1312.4 865 77.1
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1311.6 862 76.6
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1311.6 842 78.3
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1311.6 842 78.3
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1308.5 840 78.2
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1308.5 842 78.1
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1305.4 840 78.6
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1304.3 851 77.7
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1302.3 841 78.4
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1302.0 839 78.1
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1299.6 835 77.8
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1299.6 831 78.2
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1298.1 861 76.2
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1296.2 837 77.3
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1295.8 850 77.4
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 839 77.6
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 841 77.9
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1291.6 839 77.0
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1290.8 871 75.1
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1290.0 839 77.7
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1290.0 888 74.7
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1289.6 839 77.5
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 852 76.9
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1288.9 820 79.0
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1288.1 839 77.6
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 841 76.1
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1285.4 790 81.3
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1283.9 858 75.5
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1282.7 806 78.9
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1281.5 858 75.5
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 839 76.6
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1279.6 841 76.0
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1277.7 839 76.4
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1275.4 870 70.6
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1275.0 816 78.7
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 838 77.0
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1274.2 844 77.1
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 801 79.5
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 820 77.7
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 820 77.9
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1270.8 839 77.0
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 784 81.8
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1269.6 822 77.3
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1267.7 821 77.5
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1267.3 803 79.3
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1266.5 835 76.4
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1265.8 839 76.5
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1265.0 810 78.1
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1263.1 818 77.5
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 812 78.2
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1260.0 841 75.5
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1258.8 820 77.9
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1256.9 818 76.9
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1255.0 816 78.1
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 793 79.7
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 793 79.7
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1253.4 793 79.7
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1251.1 840 76.3
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1250.7 813 78.7
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1250.3 817 77.6
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1247.6 799 78.0
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1245.7 839 75.7
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1245.0 790 79.1
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1244.2 819 78.1
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1243.0 783 79.6
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1242.6 819 78.0
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1239.6 818 77.0
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1239.6 818 77.0
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1239.6 818 77.0
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1239.6 818 77.0
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1238.8 816 77.5
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1238.4 816 77.5
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1236.9 813 76.9
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1236.1 814 77.5
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1234.9 783 79.2
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1234.6 816 77.3
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1233.8 820 75.7
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1233.0 860 73.6
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1232.6 830 75.9
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1230.7 815 76.6
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1227.2 813 77.5
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1225.3 825 76.7
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1224.2 873 71.1
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1220.7 813 75.2
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1217.2 838 73.4
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1216.4 814 74.7
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1215.7 850 73.4
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1213.7 822 74.6
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1213.4 815 75.0
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1213.4 835 75.6
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1211.8 822 74.3
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1209.1 818 75.2
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1208.0 818 75.4
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1202.2 757 79.7
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1199.9 816 74.6
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1196.8 818 75.3
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1196.0 819 74.4
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1189.9 824 69.9
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1187.6 757 79.0
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1182.5 819 74.6
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1182.2 824 74.2
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1181.0 815 73.9
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1180.2 811 74.0
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1176.0 755 78.4
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1173.3 857 70.9
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1169.1 859 70.3
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1164.4 860 70.6
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1161.4 819 71.9
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1157.5 714 81.1
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1141.7 809 72.6
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1138.3 837 71.7
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1135.9 813 72.2
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1135.6 815 69.7
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1131.7 876 68.0
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1115.9 819 69.7
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1095.1 777 71.4
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1094.3 732 76.5
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1092.8 823 69.0
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1088.6 757 71.1
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 2.5e-289 998.8 808 66.2
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 1.8e-266 922.9 573 76.1
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 3.1e-263 912.1 628 69.4
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 7.4e-257 891.0 550 81.6
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.1e-251 872.8 818 60.3
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 7.4e-241 837.8 518 78.8
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.3e-240 837.0 586 69.5
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.1e-178 629.8 696 52.7
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 3.7e-139 500.0 357 77.3
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 4.0e-138 496.5 460 56.7
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.0e-121 441.0 308 69.2
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 1.3e-112 411.8 315 72.1
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 1.5e-95 355.1 273 64.1
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.0e-88 332.4 397 50.1
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.2e-76 292.4 581 41.7
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 1.9e-63 248.4 153 77.8
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.7e-51 208.8 156 69.2
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 1.1e-45 189.5 165 58.8
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 6.0e-33 147.1 479 28.6
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 4.3e-31 141.0 76 85.5
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.3e-30 139.4 431 28.1
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.0e-28 132.1 439 26.2
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 4.2e-26 124.4 63 92.1
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.3e-24 119.4 388 28.4
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 5.7e-23 114.0 396 27.8
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.4e-21 108.6 103 52.4
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.5e-20 105.9 74 67.6
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.3e-16 92.8 96 55.2
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 1.8e-13 82.4 77 53.2
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-12 79.7 266 26.3
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-12 79.3 220 29.5
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 2.2e-11 75.5 138 36.2
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 3.9e-08 64.7 116 32.8
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 5.1e-08 64.3 102 39.2
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 9.7e-07 60.1 38 76.3


User provided reference genes

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