Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g043150 Amaranthus hybridus HOM05D006598 ORTHO05D008132 3.2e-195 684.9 337 100.0
AUR62035446 Chenopodium quinoa HOM05D006598 ORTHO05D008132 1.8e-158 562.8 330 83.6
Hund26575 Selenicereus undatus HOM05D006598 ORTHO05D008132 1.1e-139 500.4 328 75.3
Sc02g0006160 Simmondsia chinensis HOM05D006598 ORTHO05D008132 4.4e-136 488.4 323 72.1
FvH4_2g39790 Fragaria vesca HOM05D006598 ORTHO05D008132 2.8e-127 459.1 332 67.5
FAN15G1256 Fragaria x ananassa HOM05D006598 ORTHO05D008132 1.1e-126 457.2 332 67.2
FAN20G2142 Fragaria x ananassa HOM05D006598 ORTHO05D008132 1.8e-126 456.4 332 67.2
FAN27G1472 Fragaria x ananassa HOM05D006598 ORTHO05D008132 2.4e-126 456.1 324 67.6
Atru.chr13.478 Acer truncatum HOM05D006598 ORTHO05D008132 2.9e-124 449.1 324 67.0
Prupe.1G379200 Prunus persica HOM05D006598 ORTHO05D008132 3.8e-124 448.7 324 66.7
Dinv36084 Davidia involucrata HOM05D006598 ORTHO05D008132 5.0e-124 448.4 321 67.3
Cfa018154 Carpinus fangiana HOM05D006598 ORTHO05D008132 1.2e-122 443.7 324 66.7
CiPaw.15G078300 Carya illinoinensis HOM05D006598 ORTHO05D008132 2.1e-122 443.0 332 65.4
QL02p008626 Quercus lobata HOM05D006598 ORTHO05D008132 4.7e-122 441.8 332 65.7
Haze_17965 Corylus avellana HOM05D006598 ORTHO05D008132 8.0e-122 441.0 330 65.8
Dinv39426 Davidia involucrata HOM05D006598 ORTHO05D008132 1.4e-121 440.3 324 67.3
GSVIVG01009711001 Vitis vinifera HOM05D006598 ORTHO05D008132 3.0e-121 439.1 319 67.4
CSS0023084 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 4.0e-121 438.7 321 67.0
TAR625G1490 Trochodendron aralioides HOM05D006598 ORTHO05D008132 6.8e-121 438.0 323 67.2
vmacro04528 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 4.4e-120 435.3 319 65.5
Lj4A39T66 Lonicera japonica HOM05D006598 ORTHO05D008132 2.2e-119 433.0 322 67.1
Rhsim07G0239600 Rhododendron simsii HOM05D006598 ORTHO05D008132 2.2e-119 433.0 320 65.0
CANSAT25G2965 Cannabis sativa HOM05D006598 ORTHO05D008132 3.7e-119 432.2 324 65.7
Migut.C00732 Erythranthe guttata HOM05D006598 ORTHO05D008132 3.7e-119 432.2 325 65.2
Potri.002G260300 Populus trichocarpa HOM05D006598 ORTHO05D008132 3.7e-119 432.2 327 64.8
MBI16_g31005_MAGBIO Magnolia biondii HOM05D006598 ORTHO05D008132 8.3e-119 431.0 323 65.6
Glyma.04G032000 Glycine max HOM05D006598 ORTHO05D008132 1.4e-118 430.3 324 64.2
Manes.18G026900 Manihot esculenta HOM05D006598 ORTHO05D008132 1.4e-118 430.3 323 64.1
Actinidia15332 Actinidia chinensis HOM05D006598 ORTHO05D008132 2.4e-118 429.5 323 66.3
Sabra02G0198100 Salix brachista HOM05D006598 ORTHO05D008132 2.4e-118 429.5 327 64.8
SalBow7G0748 Salvia bowleyana HOM05D006598 ORTHO05D008132 1.2e-117 427.2 342 62.3
Ca_15516_v3 Cicer arietinum L. HOM05D006598 ORTHO05D008132 2.0e-117 426.4 323 63.8
TPR.G12344 Trifolium pratense HOM05D006598 ORTHO05D008132 2.0e-117 426.4 323 63.5
Medtr3g111840 Medicago truncatula HOM05D006598 ORTHO05D008132 2.7e-117 426.0 323 63.8
CSS0013932 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 5.9e-117 424.9 314 66.6
Ciclev10001322m.g Citrus clementina HOM05D006598 ORTHO05D008132 5.9e-117 424.9 325 64.0
Actinidia38007 Actinidia chinensis HOM05D006598 ORTHO05D008132 1.0e-116 424.1 320 64.7
Cc10_g02850 Coffea canephora HOM05D006598 ORTHO05D008132 1.0e-116 424.1 322 62.1
PSO541G3348 Papaver somniferum HOM05D006598 ORTHO05D008132 2.3e-116 422.9 336 62.2
Aqoxy6G01111 Aquilegia oxysepala HOM05D006598 ORTHO05D008132 2.9e-116 422.5 320 63.4
Duzib116G0116 Durio zibethinus HOM05D006598 ORTHO05D008132 2.9e-116 422.5 320 64.7
PGR031G2630 Punica granatum HOM05D006598 ORTHO05D008132 3.8e-116 422.2 325 64.0
COL.COLO4_26313 Corchorus olitorius HOM05D006598 ORTHO05D008132 6.6e-116 421.4 321 65.1
Glyma.06G032100 Glycine max HOM05D006598 ORTHO05D008132 6.6e-116 421.4 322 64.0
Rhsim06G0033600 Rhododendron simsii HOM05D006598 ORTHO05D008132 8.6e-116 421.0 321 64.5
Eucgr.F01894 Eucalyptus grandis HOM05D006598 ORTHO05D008132 1.1e-115 420.6 321 63.9
Phvul.009G057800 Phaseolus vulgaris HOM05D006598 ORTHO05D008132 1.1e-115 420.6 321 63.2
PGSC0003DMG400003679 Solanum tuberosum HOM05D006598 ORTHO05D008132 1.9e-115 419.9 331 60.7
CAN.G1226.16 Capsicum annuum HOM05D006598 ORTHO05D008132 2.5e-115 419.5 331 60.1
MSTRG.25174 Avicennia marina HOM05D006598 ORTHO05D008132 4.2e-115 418.7 323 63.8
PSO675G7094 Papaver somniferum HOM05D006598 ORTHO05D008132 5.6e-115 418.3 333 62.2
arahy.Tifrunner.gnm1.ann1.KF7WGB Arachis hypogaea HOM05D006598 ORTHO05D008132 7.2e-115 417.9 329 61.7
arahy.Tifrunner.gnm1.ann1.9Y7K4V Arachis hypogaea HOM05D006598 ORTHO05D008132 9.5e-115 417.5 322 62.7
Nitab4.5_0010510g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 1.2e-114 417.2 335 60.6
vmacro21641 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 2.1e-114 416.4 322 63.4
Psat5g017160 Pisum sativum HOM05D006598 ORTHO05D008132 2.8e-114 416.0 324 62.7
TWI36G0987 Tripterygium wilfordii HOM05D006598 ORTHO05D008132 2.8e-114 416.0 326 63.8
Sed0027447 Sechium edule HOM05D006598 ORTHO05D008132 3.6e-114 415.6 314 64.0
VMungo1309G1899 Vigna mungo HOM05D006598 ORTHO05D008132 4.7e-114 415.2 321 63.2
Cpa.g.sc36.79 Carica papaya HOM05D006598 ORTHO05D008132 1.8e-113 413.3 323 63.8
Sopen04g033970 Solanum pennellii HOM05D006598 ORTHO05D008132 3.0e-113 412.5 331 60.4
ECA232G3558 Erigeron canadensis HOM05D006598 ORTHO05D008132 5.2e-113 411.8 316 63.0
Lj1g0003551 Lotus japonicus HOM05D006598 ORTHO05D008132 2.6e-112 409.5 328 62.5
Solyc04g080380.3 Solanum lycopersicum HOM05D006598 ORTHO05D008132 2.6e-112 409.5 331 59.8
Nitab4.5_0006280g0060 Nicotiana tabacum HOM05D006598 ORTHO05D008132 3.4e-112 409.1 331 60.4
Lsat_1_v5_gn_4_119301 Lactuca sativa HOM05D006598 ORTHO05D008132 6.4e-111 404.8 312 63.5
BcaC02g10811 Brassica carinata HOM05D006598 ORTHO05D008132 3.2e-110 402.5 323 61.0
A06p48250 Brassica napus HOM05D006598 ORTHO05D008132 3.2e-110 402.5 323 61.0
C04p24910 Brassica napus HOM05D006598 ORTHO05D008132 3.2e-110 402.5 323 61.0
BolC4t23991H Brassica oleracea HOM05D006598 ORTHO05D008132 3.2e-110 402.5 323 61.0
BraA06t27693Z Brassica rapa HOM05D006598 ORTHO05D008132 3.2e-110 402.5 323 61.0
Sp2g07390 Schrenkiella parvula HOM05D006598 ORTHO05D008132 3.2e-110 402.5 323 61.0
TAR628G1208 Trochodendron aralioides HOM05D006598 ORTHO05D008132 7.0e-110 401.4 297 66.3
Thhalv10003240m.g Eutrema salsugineum HOM05D006598 ORTHO05D008132 9.2e-110 401.0 323 61.0
SGA_v2.0_scaffold54G19518 Striga asiatica HOM05D006598 ORTHO05D008132 9.2e-110 401.0 322 61.5
BcaC06g31749 Brassica carinata HOM05D006598 ORTHO05D008132 1.3e-108 397.1 323 60.4
THA.LOC104806941 Tarenaya hassleriana HOM05D006598 ORTHO05D008132 5.0e-108 395.2 334 59.3
Aa31LG9G12810 Aethionema arabicum HOM05D006598 ORTHO05D008132 6.6e-108 394.8 323 61.3
Lalb_Chr11g0062331 Lupinus albus HOM05D006598 ORTHO05D008132 6.6e-108 394.8 323 61.6
AL8G18360 Arabidopsis lyrata HOM05D006598 ORTHO05D008132 1.5e-107 393.7 329 58.7
Carub.0008s0618 Capsella rubella HOM05D006598 ORTHO05D008132 9.5e-107 391.0 323 58.8
HPP92_018806 Vanilla planifolia HOM05D006598 ORTHO05D008132 1.2e-106 390.6 333 58.9
CARHR181720 Cardamine hirsuta HOM05D006598 ORTHO05D008132 2.8e-106 389.4 323 58.5
CDE04G2166 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 6.2e-106 388.3 334 56.9
Thecc.08G027000 Theobroma cacao HOM05D006598 ORTHO05D008132 4.4e-104 382.1 320 61.6
AT5G42760 Arabidopsis thaliana HOM05D006598 ORTHO05D008132 3.2e-102 375.9 326 57.4
ATR0810G155 Amborella trichopoda HOM05D006598 ORTHO05D008132 1.2e-101 374.0 318 57.2
Oeu049953.1 Olea europaea HOM05D006598 ORTHO05D008132 3.1e-97 359.4 328 56.7
Nitab4.5_0005730g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 9.8e-96 354.4 319 57.1
Zm00001eb059150 Zea mays HOM05D006598 ORTHO05D008132 2.3e-92 343.2 307 54.1
Os03g0775000 Oryza sativa ssp. japonica HOM05D006598 ORTHO05D008132 3.0e-92 342.8 307 56.0
SEGI_39292 Sequoiadendron giganteum HOM05D006598 ORTHO05D008132 8.1e-90 334.7 319 55.2
AUR62039547 Chenopodium quinoa HOM05D006598 ORTHO05D008132 9.6e-83 311.2 249 67.9
CDE06G0448 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 3.1e-81 306.2 292 54.8
TAR381G1379 Trochodendron aralioides HOM05D006598 ORTHO05D008132 7.1e-78 295.0 206 68.4
AagrBONN_evm.TU.Sc2ySwM_228.3129 Anthoceros agrestis HOM05D006598 ORTHO05D008132 2.3e-76 290.0 318 47.8
Pp3c8_2950 Physcomitrium patens HOM05D006598 ORTHO05D008132 3.6e-74 282.7 309 49.5
Pp3c4_6590 Physcomitrium patens HOM05D006598 ORTHO05D008132 8.4e-71 271.6 306 49.0
Nitab4.5_0001091g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 1.1e-70 271.2 203 63.5
HPP92_018704 Vanilla planifolia HOM05D006598 ORTHO05D008132 5.1e-68 262.3 255 54.9
Nn5g29606 Nelumbo nucifera HOM05D006598 ORTHO05D008132 4.5e-64 249.2 216 60.2
CSS0023478 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 1.1e-59 234.6 160 69.4
unitig_46.g17936 Utricularia gibba HOM05D006598 ORTHO05D008132 1.1e-57 228.0 177 60.5
HPP92_018786 Vanilla planifolia HOM05D006598 ORTHO05D008132 4.0e-57 226.1 163 65.0
HanXRQChr16g0508491 Helianthus annuus HOM05D006598 ORTHO05D008132 4.2e-54 216.1 191 58.1
FAN20G3016 Fragaria x ananassa HOM05D006598 ORTHO05D008132 2.3e-52 210.3 132 72.7
Actinidia29823 Actinidia chinensis HOM05D006598 ORTHO05D008132 3.5e-45 186.4 156 59.0
Pp3c12_23400 Physcomitrium patens HOM05D006598 ORTHO05D008132 1.9e-43 180.6 285 40.0
Actinidia22543 Actinidia chinensis HOM05D006598 ORTHO05D008132 2.5e-38 163.7 119 65.5
HPP92_018785 Vanilla planifolia HOM05D006598 ORTHO05D008132 1.0e-36 158.3 150 54.7
TAR381G0844 Trochodendron aralioides HOM05D006598 ORTHO05D008132 3.3e-35 153.3 122 63.9
MD15G1027400 Malus domestica HOM05D006598 ORTHO05D008132 8.2e-34 148.7 89 74.2
CSS0032599 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 5.5e-22 109.4 112 52.7
Actinidia29824 Actinidia chinensis HOM05D006598 ORTHO05D008132 4.7e-21 106.3 122 48.4
MCO09G151 Micromonas commoda HOM05D006598 ORTHO05D008132 2.9e-15 87.0 209 34.0
Nitab4.5_0000457g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 4.2e-14 83.2 72 56.9
CBR_g22328 Chara braunii HOM05D006598 ORTHO05D008132 2.0e-11 74.3 173 31.2
Cre17.g737650 Chlamydomonas reinhardtii HOM05D038115 ORTHO05D008132 4.4e-11 73.2 223 27.8
HanXRQChr09g0268921 Helianthus annuus HOM05D006598 ORTHO05D008132 5.4e-09 66.2 70 51.4
PSO170G1161 Papaver somniferum HOM05D006737 ORTHO05D008418 2.7e-08 63.9 185 31.9
MD11G1309100 Malus domestica HOM05D006737 ORTHO05D008418 5.9e-08 62.8 193 29.0
Potri.002G203900 Populus trichocarpa HOM05D006737 ORTHO05D008418 5.9e-08 62.8 201 27.4
Prupe.8G262100 Prunus persica HOM05D006737 ORTHO05D008418 1.3e-07 61.6 201 27.4
Cfa005906 Carpinus fangiana HOM05D006737 ORTHO05D008418 1.7e-07 61.2 193 26.9
Thecc.01G301300 Theobroma cacao HOM05D006737 ORTHO05D008418 1.7e-07 61.2 213 27.2
TWI14G0449 Tripterygium wilfordii HOM05D006737 ORTHO05D008418 2.2e-07 60.8 250 27.2
PSO407G0435 Papaver somniferum HOM05D006737 ORTHO05D008418 3.8e-07 60.1 199 31.7
MD03G1288800 Malus domestica HOM05D006737 ORTHO05D008418 8.5e-07 58.9 193 28.0
Ciclev10021225m.g Citrus clementina HOM05D006737 ORTHO05D008418 2.5e-06 57.4 187 26.2
Cre01.g055469 Chlamydomonas reinhardtii HOM05D006737 ORTHO05D008418 7.2e-06 55.8 161 23.6
GSVIVG01028025001 Vitis vinifera HOM05D006737 ORTHO05D008418 9.5e-06 55.5 267 24.3


User provided reference genes

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