Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 3.6e-230 801.2 403 100.0
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.2e-124 450.7 426 58.2
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 6.6e-115 418.3 434 53.2
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 2.2e-110 403.3 399 56.1
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 4.2e-93 345.9 475 46.7
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 5.5e-93 345.5 471 43.9
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.6e-92 344.0 471 43.7
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 2.7e-92 343.2 409 49.6
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 3.9e-91 339.3 470 44.5
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 5.1e-91 339.0 470 44.5
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 3.3e-90 336.3 443 45.1
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 4.3e-90 335.9 469 45.8
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 2.4e-88 330.1 420 47.1
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 5.3e-88 328.9 409 47.2
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 5.3e-88 328.9 403 46.9
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 6.9e-88 328.6 399 47.9
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 9.0e-88 328.2 460 43.3
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 1.5e-87 327.4 488 42.0
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 2.0e-87 327.0 404 46.8
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 3.4e-87 326.2 470 43.6
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 5.9e-87 325.5 480 44.0
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.3e-86 324.3 406 48.0
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.3e-86 324.3 452 44.7
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.7e-86 323.9 382 49.0
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 2.9e-86 323.2 397 47.1
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.8e-86 322.8 396 47.0
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.8e-86 322.8 397 47.1
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 6.5e-86 322.0 469 43.7
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 1.4e-85 320.9 395 47.3
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 1.9e-85 320.5 401 45.1
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 2.5e-85 320.1 384 49.5
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.5e-85 320.1 397 46.9
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 2.5e-85 320.1 399 46.9
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 3.2e-85 319.7 404 46.0
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 9.3e-85 318.2 406 46.6
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 1.2e-84 317.8 410 44.9
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.2e-84 317.8 385 47.8
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.6e-84 317.4 397 46.3
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.7e-84 316.6 385 47.5
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 5.1e-83 312.4 488 42.2
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 8.7e-83 311.6 404 46.3
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 1.5e-82 310.8 493 41.6
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 1.9e-82 310.5 498 41.0
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 1.9e-82 310.5 397 47.9
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 4.3e-82 309.3 402 44.3
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 7.4e-82 308.5 467 42.2
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 2.2e-81 307.0 473 41.9
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 2.2e-81 307.0 447 42.7
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 2.8e-81 306.6 467 42.4
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 6.3e-81 305.4 383 47.0
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.8e-80 303.9 403 43.4
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 1.2e-79 301.2 440 43.9
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 1.5e-79 300.8 474 41.6
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 5.9e-79 298.9 401 43.6
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 7.7e-79 298.5 432 41.9
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 1.7e-78 297.4 389 47.6
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 2.9e-78 296.6 430 41.9
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 6.5e-78 295.4 399 43.9
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 6.5e-78 295.4 391 45.5
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.4e-77 294.3 465 41.3
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.9e-77 293.9 430 44.0
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 3.2e-77 293.1 473 41.9
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 5.5e-77 292.4 469 41.8
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 9.4e-77 291.6 405 44.7
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 2.7e-76 290.0 405 44.2
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 3.6e-76 289.7 469 39.2
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 1.0e-75 288.1 461 40.8
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 1.0e-75 288.1 381 43.8
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 1.4e-75 287.7 473 40.6
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.8e-75 287.3 465 40.2
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 1.8e-75 287.3 476 36.6
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 5.1e-75 285.8 408 41.9
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 6.7e-75 285.4 386 43.5
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 6.7e-75 285.4 395 45.1
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 8.8e-75 285.0 480 40.4
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 1.1e-74 284.6 395 44.8
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 2.0e-74 283.9 417 42.9
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 2.6e-74 283.5 417 42.7
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 3.3e-74 283.1 404 42.1
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 4.4e-74 282.7 417 42.9
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 5.7e-74 282.3 394 42.9
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 1.3e-73 281.2 394 42.9
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 1.3e-73 281.2 402 43.0
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 2.2e-73 280.4 469 39.0
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.8e-73 280.0 465 40.0
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 6.3e-73 278.9 488 39.3
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 5.3e-72 275.8 421 42.3
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 6.9e-72 275.4 477 36.9
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 6.9e-72 275.4 360 45.0
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 1.5e-71 274.2 388 43.6
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 3.4e-71 273.1 488 39.1
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 7.7e-71 271.9 392 43.1
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 6.5e-70 268.9 469 37.1
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 3.2e-69 266.5 462 39.4
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 1.6e-68 264.2 442 39.6
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.8e-67 260.8 393 42.0
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 5.2e-67 259.2 333 45.6
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 1.1e-66 258.1 417 41.5
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 2.6e-66 256.9 434 40.6
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 3.7e-65 253.1 483 37.1
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 3.7e-65 253.1 404 40.8
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 6.3e-65 252.3 380 43.2
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 2.4e-64 250.4 443 36.6
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 2.4e-64 250.4 446 38.8
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 1.2e-63 248.1 464 37.5
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 1.0e-62 245.0 450 38.7
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.1e-61 241.5 290 48.3
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 1.9e-61 240.7 406 38.2
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 2.5e-61 240.4 361 42.7
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.5e-61 240.4 424 38.0
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 1.2e-60 238.0 389 38.3
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.6e-60 237.7 424 37.7
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 6.7e-59 232.3 495 34.9
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 1.2e-58 231.5 442 36.2
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 2.0e-58 230.7 464 35.1
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 2.6e-58 230.3 497 35.6
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 3.3e-58 229.9 493 34.7
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 2.4e-56 223.8 189 57.1
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 3.5e-55 219.9 191 58.1
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 2.9e-54 216.9 450 34.2
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 1.1e-53 214.9 450 34.2
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 3.6e-52 209.9 399 34.6
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.8e-51 207.6 389 35.5
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 5.2e-51 206.1 441 33.1
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 6.8e-51 205.7 440 33.2
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 1.2e-50 204.9 390 37.7
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 6.3e-49 199.1 212 50.0
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 3.8e-46 189.9 411 31.9
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.0e-46 189.5 398 32.7
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.1e-45 188.3 362 34.3
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 7.2e-45 185.7 151 57.0
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 9.5e-45 185.3 193 50.3
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.2e-44 184.9 402 34.1
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 8.0e-44 182.2 405 31.4
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.8e-43 179.1 397 32.7
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 3.4e-42 176.8 141 60.3
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 3.4e-42 176.8 141 60.3
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 4.4e-42 176.4 411 31.4
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 4.1e-40 169.9 256 44.1
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 4.1e-40 169.9 256 44.1
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 2.1e-36 157.5 157 49.0
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 4.0e-35 153.3 157 49.0
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 4.0e-35 153.3 157 50.3
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 4.4e-34 149.8 480 28.1
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.2e-33 147.5 363 31.4
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 3.7e-33 146.7 106 60.4
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 3.3e-29 133.7 154 40.9
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 4.7e-28 129.8 351 30.8
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 3.4e-26 123.6 151 43.7
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 4.6e-23 113.2 376 27.7
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 5.2e-19 99.8 326 32.2
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 5.1e-14 83.2 262 31.3
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 7.3e-13 79.3 243 26.7
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 5.4e-08 63.2 118 32.2
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 6.0e-07 59.7 85 38.8


User provided reference genes

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