Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g042460 Amaranthus hybridus HOM05D007683 ORTHO05D009703 3.3e-69 265.0 140 100.0
Ah.12g064430 Amaranthus hybridus HOM05D007683 ORTHO05D009703 7.3e-37 157.5 140 62.1
Oeu008103.1 Olea europaea HOM05D007683 ORTHO05D009703 2.2e-17 92.8 132 42.4
Solyc03g095700.1 Solanum lycopersicum HOM05D007683 ORTHO05D009703 2.7e-15 85.9 95 54.7
Ciclev10033031m.g Citrus clementina HOM05D007683 ORTHO05D009703 2.3e-14 82.8 113 46.9
Manes.10G003157 Manihot esculenta HOM05D007683 ORTHO05D009703 2.3e-14 82.8 104 47.1
MD07G1235100 Malus domestica HOM05D007683 ORTHO05D009703 5.1e-14 81.6 161 36.6
Atru.chr12.196 Acer truncatum HOM05D007683 ORTHO05D009703 8.7e-14 80.9 75 58.7
MSTRG.8877 Avicennia marina HOM05D007683 ORTHO05D009703 8.7e-14 80.9 98 48.0
Gorai.011G206600 Gossypium raimondii HOM05D007683 ORTHO05D009703 8.7e-14 80.9 113 47.8
Peaxi162Scf00073g10232 Petunia axillaris HOM05D007683 ORTHO05D009703 8.7e-14 80.9 94 50.0
Nitab4.5_0000171g0240 Nicotiana tabacum HOM05D007683 ORTHO05D009703 1.5e-13 80.1 44 84.1
Nitab4.5_0006356g0030 Nicotiana tabacum HOM05D007683 ORTHO05D009703 1.5e-13 80.1 44 84.1
FAN01G0748 Fragaria x ananassa HOM05D007683 ORTHO05D009703 1.9e-13 79.7 114 44.7
Gohir.D10G184400 Gossypium hirsutum HOM05D007683 ORTHO05D009703 1.9e-13 79.7 113 46.9
COL.COLO4_19470 Corchorus olitorius HOM05D007683 ORTHO05D009703 2.5e-13 79.3 94 48.9
Dinv21856 Davidia involucrata HOM05D004933 ORTHO05D005465 2.5e-13 79.3 104 45.2
Eucgr.J00104 Eucalyptus grandis HOM05D007683 ORTHO05D009703 2.5e-13 79.3 76 56.6
Sopen03g025620 Solanum pennellii HOM05D007683 ORTHO05D009703 3.3e-13 79.0 97 46.4
TWI09G1439 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 3.3e-13 79.0 112 46.4
FvH4_7g26070 Fragaria vesca HOM05D007683 ORTHO05D009703 5.7e-13 78.2 114 43.0
Gohir.A10G177800 Gossypium hirsutum HOM05D007683 ORTHO05D009703 5.7e-13 78.2 113 46.9
Hma1.2p1_0264F.1_g105970 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 5.7e-13 78.2 101 46.5
QL08p065063 Quercus lobata HOM05D007683 ORTHO05D009703 5.7e-13 78.2 85 52.9
Cfa001197 Carpinus fangiana HOM05D007683 ORTHO05D009703 7.4e-13 77.8 44 81.8
Haze_17368 Corylus avellana HOM05D007683 ORTHO05D009703 7.4e-13 77.8 44 81.8
PGSC0003DMG400020609 Solanum tuberosum HOM05D007683 ORTHO05D009703 7.4e-13 77.8 59 66.1
Lalb_Chr11g0067711 Lupinus albus HOM05D007683 ORTHO05D009703 9.6e-13 77.4 89 49.4
SGA_v2.0_scaffold60G20879 Striga asiatica HOM05D007683 ORTHO05D009703 9.6e-13 77.4 108 43.5
Glyma.06G141600 Glycine max HOM05D007683 ORTHO05D009703 1.3e-12 77.0 90 48.9
Medtr5g067740 Medicago truncatula HOM05D007683 ORTHO05D009703 1.3e-12 77.0 44 81.8
Psat2g062760 Pisum sativum HOM05D007683 ORTHO05D009703 1.3e-12 77.0 124 41.1
Potri.013G090200 Populus trichocarpa HOM05D007683 ORTHO05D009703 1.3e-12 77.0 95 49.5
Prupe.2G265400 Prunus persica HOM05D007683 ORTHO05D009703 2.1e-12 76.3 166 35.5
CANSAT56G2075 Cannabis sativa HOM05D007683 ORTHO05D009703 3.7e-12 75.5 44 79.5
PGR044G1007 Punica granatum HOM05D007683 ORTHO05D009703 3.7e-12 75.5 51 72.5
Thecc.10G184800 Theobroma cacao HOM05D007683 ORTHO05D009703 3.7e-12 75.5 92 47.8
TAR633G1265 Trochodendron aralioides HOM05D007683 ORTHO05D009703 3.7e-12 75.5 104 44.2
Lj1g0018746 Lotus japonicus HOM05D007683 ORTHO05D009703 4.8e-12 75.1 47 76.6
Cpa.g.sc19.42 Carica papaya HOM05D007683 ORTHO05D009703 6.3e-12 74.7 91 46.2
FAN03G1207 Fragaria x ananassa HOM05D007683 ORTHO05D009703 6.3e-12 74.7 110 43.6
Glyma.14G186400 Glycine max HOM05D007683 ORTHO05D009703 6.3e-12 74.7 45 77.8
RcHm_v2.0_Chr1g0372481 Rosa chinensis HOM05D007683 ORTHO05D009703 6.3e-12 74.7 108 42.6
TPR.G7683 Trifolium pratense HOM05D007683 ORTHO05D009703 6.3e-12 74.7 91 45.1
Hma1.2p1_1805F.1_g303190 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 8.2e-12 74.3 44 77.3
Phvul.008G186200 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 8.2e-12 74.3 43 81.4
ClCG07G005260 Citrullus lanatus HOM05D007683 ORTHO05D009703 1.1e-11 73.9 44 79.5
LjContig00408g0002016 Lotus japonicus HOM05D007683 ORTHO05D009703 1.1e-11 73.9 45 77.8
Gohir.D06G187100 Gossypium hirsutum HOM05D007683 ORTHO05D009703 1.4e-11 73.6 43 79.1
Gorai.010G219400 Gossypium raimondii HOM05D007683 ORTHO05D009703 1.4e-11 73.6 43 79.1
MD01G1169200 Malus domestica HOM05D007683 ORTHO05D009703 1.4e-11 73.6 158 34.8
Cc02_g05230 Coffea canephora HOM05D007683 ORTHO05D009703 1.8e-11 73.2 138 37.0
Gohir.A06G180150 Gossypium hirsutum HOM05D007683 ORTHO05D009703 2.4e-11 72.8 43 79.1
TWI73G0272 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 2.4e-11 72.8 137 36.5
VMungo1309G1531 Vigna mungo HOM05D007683 ORTHO05D009703 2.4e-11 72.8 45 68.9
DCAR_014661 Daucus carota HOM05D007683 ORTHO05D009703 3.1e-11 72.4 137 39.4
Duzib106G0215 Durio zibethinus HOM05D007683 ORTHO05D009703 3.1e-11 72.4 43 79.1
CsaV3_5G011110 Cucumis sativus L. HOM05D007683 ORTHO05D009703 4.1e-11 72.0 54 64.8
MELO3C020169.2 Cucumis melo HOM05D007683 ORTHO05D009703 5.3e-11 71.6 44 75.0
Rhsim03G0153400 Rhododendron simsii HOM05D007683 ORTHO05D009703 5.3e-11 71.6 42 83.3
Phvul.009G042800 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 9.0e-11 70.9 45 68.9
Sed0015955 Sechium edule HOM05D007683 ORTHO05D009703 1.2e-10 70.5 44 75.0
AT5G05220 Arabidopsis thaliana HOM05D007683 ORTHO05D009703 1.5e-10 70.1 42 76.2
Sed0023040 Sechium edule HOM05D007683 ORTHO05D009703 1.5e-10 70.1 44 72.7
Glyma.02G219100 Glycine max HOM05D007683 ORTHO05D009703 2.0e-10 69.7 45 75.6
BcaC06g32231 Brassica carinata HOM05D007683 ORTHO05D009703 2.6e-10 69.3 42 73.8
C09p71480 Brassica napus HOM05D007683 ORTHO05D009703 2.6e-10 69.3 42 73.8
BolC9t59911H Brassica oleracea HOM05D007683 ORTHO05D009703 2.6e-10 69.3 42 73.8
Migut.F00568 Erythranthe guttata HOM05D007683 ORTHO05D009703 2.6e-10 69.3 142 37.3
Nn2g10270 Nelumbo nucifera HOM05D007683 ORTHO05D009703 2.6e-10 69.3 44 72.7
Sp6g37610 Schrenkiella parvula HOM05D007683 ORTHO05D009703 2.6e-10 69.3 42 73.8
A10p30970 Brassica napus HOM05D007683 ORTHO05D009703 3.4e-10 68.9 42 73.8
BraA10t45142Z Brassica rapa HOM05D007683 ORTHO05D009703 3.4e-10 68.9 42 73.8
THA.LOC104823170 Tarenaya hassleriana HOM05D007683 ORTHO05D009703 3.4e-10 68.9 58 56.9
Aa31LG11G6070 Aethionema arabicum HOM05D007683 ORTHO05D009703 4.5e-10 68.6 44 68.2
AL6G15060 Arabidopsis lyrata HOM05D007683 ORTHO05D009703 4.5e-10 68.6 42 73.8
CARHR208020 Cardamine hirsuta HOM05D007683 ORTHO05D009703 4.5e-10 68.6 42 73.8
BcaB05g21726 Brassica carinata HOM05D007683 ORTHO05D009703 5.9e-10 68.2 42 73.8
Carub.0006s0415 Capsella rubella HOM05D007683 ORTHO05D009703 5.9e-10 68.2 42 73.8
Lj6g0012778 Lotus japonicus HOM05D007683 ORTHO05D009703 7.6e-10 67.8 41 78.0
Thhalv10014989m.g Eutrema salsugineum HOM05D007683 ORTHO05D009703 2.9e-09 65.9 42 71.4
Sabra13G0070100 Salix brachista HOM05D007683 ORTHO05D009703 2.9e-09 65.9 150 37.3
CDE07G1521 Ceratophyllum demersum HOM05D006969 ORTHO05D008826 8.5e-09 64.3 55 61.8
ATR1127G105 Amborella trichopoda HOM05D007683 ORTHO05D009703 5.5e-08 61.6 97 35.1
VMungo0647G1507 Vigna mungo HOM05D007683 ORTHO05D009703 2.7e-07 59.3 37 70.3
MBI15_g36064_MAGBIO Magnolia biondii HOM05D007683 ORTHO05D009703 6.1e-07 58.2 44 63.6
HanXRQChr14g0460581 Helianthus annuus HOM05D007683 ORTHO05D009703 1.3e-06 57.0 42 66.7
Lsat_1_v5_gn_2_126821 Lactuca sativa HOM05D007683 ORTHO05D009703 1.3e-06 57.0 142 31.7
Aqoxy4G03276 Aquilegia oxysepala HOM05D007683 ORTHO05D009703 3.0e-06 55.8 34 79.4
ECA238G0799 Erigeron canadensis HOM05D007683 ORTHO05D009703 3.9e-06 55.5 42 61.9


User provided reference genes

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