Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g042230 Amaranthus hybridus HOM05D006245 ORTHO05D007260 3.0e-260 901.4 469 100.0
EL10Ac1g01844 Beta vulgaris HOM05D006245 ORTHO05D007260 9.3e-60 235.3 319 53.3
AUR62035186 Chenopodium quinoa HOM05D006245 ORTHO05D007260 2.3e-42 177.6 287 46.0
AUR62041341 Chenopodium quinoa HOM05D006245 ORTHO05D007260 8.7e-42 175.6 288 44.8
Hund01813 Selenicereus undatus HOM05D006245 ORTHO05D007260 2.6e-38 164.1 314 41.1
CiPaw.07G131600 Carya illinoinensis HOM05D006245 ORTHO05D007260 7.7e-30 136.0 261 41.4
Ciclev10002005m.g Citrus clementina HOM05D006245 ORTHO05D007260 1.0e-29 135.6 303 37.3
Sc02g0009330 Simmondsia chinensis HOM05D006245 ORTHO05D007260 1.1e-28 132.1 294 41.2
Solyc04g082890.3 Solanum lycopersicum HOM05D006245 ORTHO05D007260 7.2e-28 129.4 296 37.8
Sopen04g036530 Solanum pennellii HOM05D006245 ORTHO05D007260 7.2e-28 129.4 279 39.1
PGSC0003DMG400010008 Solanum tuberosum HOM05D006245 ORTHO05D007260 7.2e-28 129.4 281 40.9
Actinidia15551 Actinidia chinensis HOM05D006245 ORTHO05D007260 1.6e-27 128.3 324 38.6
Cpa.g.sc438.4 Carica papaya HOM05D006245 ORTHO05D007260 6.1e-27 126.3 296 37.2
GSVIVG01013443001 Vitis vinifera HOM05D006245 ORTHO05D007260 7.9e-27 125.9 118 62.7
PGR083G2384 Punica granatum HOM05D006245 ORTHO05D007260 1.0e-26 125.6 325 37.5
vmacro21743 Vaccinium macrocarpon HOM05D006245 ORTHO05D007260 1.0e-26 125.6 287 36.9
Cpa.g.c24967.6 Carica papaya HOM05D006245 ORTHO05D007260 1.4e-26 125.2 296 39.5
CAN.G1330.24 Capsicum annuum HOM05D006245 ORTHO05D007260 1.8e-26 124.8 279 38.0
QL02p016022 Quercus lobata HOM05D006245 ORTHO05D007260 1.8e-26 124.8 286 38.1
Cfa014151 Carpinus fangiana HOM05D006245 ORTHO05D007260 2.3e-26 124.4 92 71.7
Dinv05508 Davidia involucrata HOM05D006245 ORTHO05D007260 3.9e-26 123.6 298 36.2
Haze_22875 Corylus avellana HOM05D006245 ORTHO05D007260 6.7e-26 122.9 92 70.7
CANSAT11G2487 Cannabis sativa HOM05D006245 ORTHO05D007260 8.8e-26 122.5 295 36.6
Phvul.007G247600 Phaseolus vulgaris HOM05D006245 ORTHO05D007260 8.8e-26 122.5 94 72.3
Sed0007375 Sechium edule HOM05D006245 ORTHO05D007260 8.8e-26 122.5 252 41.7
Lj5g0002209 Lotus japonicus HOM05D006245 ORTHO05D007260 1.1e-25 122.1 94 70.2
DCAR_017622 Daucus carota HOM05D006245 ORTHO05D007260 1.5e-25 121.7 303 37.0
Manes.18G001000 Manihot esculenta HOM05D006245 ORTHO05D007260 2.0e-25 121.3 337 35.9
Glyma.02G161100 Glycine max HOM05D006245 ORTHO05D007260 3.3e-25 120.6 94 70.2
ClCG11G019110 Citrullus lanatus HOM05D006245 ORTHO05D007260 4.3e-25 120.2 315 37.5
Manes.18G005000 Manihot esculenta HOM05D006245 ORTHO05D007260 1.3e-24 118.6 341 34.6
Eucgr.F03612 Eucalyptus grandis HOM05D006245 ORTHO05D007260 2.2e-24 117.9 94 68.1
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 2.8e-24 117.5 96 69.8
Psat6g093400 Pisum sativum HOM05D006245 ORTHO05D007260 2.8e-24 117.5 94 69.1
FvH4_5g26440 Fragaria vesca HOM05D006245 ORTHO05D007260 6.3e-24 116.3 118 61.0
FAN13G0213 Fragaria x ananassa HOM05D006245 ORTHO05D007260 6.3e-24 116.3 118 61.0
FAN18G3272 Fragaria x ananassa HOM05D006245 ORTHO05D007260 8.2e-24 115.9 114 62.3
Gorai.009G309200 Gossypium raimondii HOM05D006245 ORTHO05D007260 1.1e-23 115.5 130 58.5
FAN08G3087 Fragaria x ananassa HOM05D006245 ORTHO05D007260 1.4e-23 115.2 330 33.0
Medtr1g050502 Medicago truncatula HOM05D006245 ORTHO05D007260 1.4e-23 115.2 94 67.0
Atru.chr13.34 Acer truncatum HOM05D006245 ORTHO05D007260 4.1e-23 113.6 325 35.7
PGR031G1027 Punica granatum HOM05D006245 ORTHO05D007260 4.1e-23 113.6 93 67.7
Aa31LG6G10010 Aethionema arabicum HOM05D006245 ORTHO05D007260 5.3e-23 113.2 91 68.1
CsaV3_4G037700 Cucumis sativus L. HOM05D006245 ORTHO05D007260 5.3e-23 113.2 349 35.8
TWI36G0521 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 5.3e-23 113.2 93 67.7
Gohir.A05G291700 Gossypium hirsutum HOM05D006245 ORTHO05D007260 6.9e-23 112.8 130 57.7
TAR381G0633 Trochodendron aralioides HOM05D006245 ORTHO05D007260 6.9e-23 112.8 296 35.8
MELO3C017064.2 Cucumis melo HOM05D006245 ORTHO05D007260 9.1e-23 112.5 341 35.5
Potri.005G257900 Populus trichocarpa HOM05D006245 ORTHO05D007260 9.1e-23 112.5 288 34.7
Thecc.08G098200 Theobroma cacao HOM05D006245 ORTHO05D007260 9.1e-23 112.5 138 55.1
TPR.G10624 Trifolium pratense HOM05D006245 ORTHO05D007260 9.1e-23 112.5 113 59.3
TWI56G0455 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 9.1e-23 112.5 279 35.5
Gohir.D05G292800 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.2e-22 112.1 130 56.9
RcHm_v2.0_Chr7g0217321 Rosa chinensis HOM05D006245 ORTHO05D007260 1.2e-22 112.1 311 36.3
Nn6g31596 Nelumbo nucifera HOM05D006245 ORTHO05D007260 2.0e-22 111.3 309 36.9
arahy.Tifrunner.gnm1.ann1.9KRV5K Arachis hypogaea HOM05D006245 ORTHO05D007260 3.4e-22 110.5 133 55.6
arahy.Tifrunner.gnm1.ann1.ZHJ1I0 Arachis hypogaea HOM05D006245 ORTHO05D007260 3.4e-22 110.5 133 55.6
COL.COLO4_03408 Corchorus olitorius HOM05D006245 ORTHO05D007260 4.5e-22 110.2 134 54.5
FAN04G2011 Fragaria x ananassa HOM05D006245 ORTHO05D007260 4.5e-22 110.2 309 35.0
Lalb_Chr19g0129191 Lupinus albus HOM05D006245 ORTHO05D007260 4.5e-22 110.2 226 41.2
Rhsim06G0001900 Rhododendron simsii HOM05D006245 ORTHO05D007260 7.7e-22 109.4 122 54.9
MD06G1002100 Malus domestica HOM05D006245 ORTHO05D007260 1.0e-21 109.0 185 43.8
HanXRQChr14g0427941 Helianthus annuus HOM05D006245 ORTHO05D007260 1.7e-21 108.2 92 69.6
Lsat_1_v5_gn_2_3181 Lactuca sativa HOM05D006245 ORTHO05D007260 3.8e-21 107.1 237 40.5
Migut.O00838 Erythranthe guttata HOM05D006245 ORTHO05D007260 5.0e-21 106.7 271 36.2
Aqoxy6G03039 Aquilegia oxysepala HOM05D006245 ORTHO05D007260 6.5e-21 106.3 102 61.8
MSTRG.22076 Avicennia marina HOM05D006245 ORTHO05D007260 6.5e-21 106.3 93 63.4
Gorai.012G007100 Gossypium raimondii HOM05D006245 ORTHO05D007260 1.1e-20 105.5 126 53.2
Gohir.D04G005900 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.4e-20 105.1 121 55.4
Prupe.5G003000 Prunus persica HOM05D006245 ORTHO05D007260 3.2e-20 104.0 296 36.1
MSTRG.24524 Avicennia marina HOM05D006245 ORTHO05D007260 4.2e-20 103.6 301 35.2
Cc10_g00180 Coffea canephora HOM05D006245 ORTHO05D007260 4.2e-20 103.6 234 37.6
CSS0018800 Camellia sinensis var. sinensis HOM05D006245 ORTHO05D007260 9.4e-20 102.4 262 34.4
VMungo0720G1847 Vigna mungo HOM05D006245 ORTHO05D007260 1.2e-19 102.1 75 72.0
SGA_v2.0_scaffold220G42616 Striga asiatica HOM05D006245 ORTHO05D007260 2.7e-19 100.9 285 35.1
unitig_578.g16243 Utricularia gibba HOM05D006245 ORTHO05D007260 3.6e-19 100.5 94 63.8
Ca_26636_v3 Cicer arietinum L. HOM05D006245 ORTHO05D007260 4.7e-19 100.1 87 63.2
Migut.N02994 Erythranthe guttata HOM05D006245 ORTHO05D007260 4.7e-19 100.1 242 38.4
Eucgr.G02751 Eucalyptus grandis HOM05D006245 ORTHO05D007260 4.7e-19 100.1 94 59.6
Oeu042496.1 Olea europaea HOM05D006245 ORTHO05D007260 6.1e-19 99.8 227 41.0
DCAR_009857 Daucus carota HOM05D006245 ORTHO05D007260 7.9e-19 99.4 91 61.5
CiPaw.08G078200 Carya illinoinensis HOM05D006245 ORTHO05D007260 1.0e-18 99.0 94 59.6
PSO541G3542 Papaver somniferum HOM05D006245 ORTHO05D007260 1.4e-18 98.6 310 32.3
PSO675G9277 Papaver somniferum HOM05D006245 ORTHO05D007260 1.8e-18 98.2 311 33.4
SalBow6G6430 Salvia bowleyana HOM05D006245 ORTHO05D007260 3.0e-18 97.4 317 34.4
AUR62043321 Chenopodium quinoa HOM05D006245 ORTHO05D007260 6.7e-18 96.3 65 75.4
AT1G42990 Arabidopsis thaliana HOM05D006245 ORTHO05D007260 1.1e-17 95.5 87 62.1
Duzib114G1035 Durio zibethinus HOM05D006245 ORTHO05D007260 1.1e-17 95.5 72 69.4
unitig_8.g4814 Utricularia gibba HOM05D006245 ORTHO05D007260 1.1e-17 95.5 121 56.2
AL1G51480 Arabidopsis lyrata HOM05D006245 ORTHO05D007260 1.5e-17 95.1 94 60.6
MBI04_g42540_MAGBIO Magnolia biondii HOM05D006245 ORTHO05D007260 1.5e-17 95.1 250 33.6
Peaxi162Scf00385g00068 Petunia axillaris HOM05D006245 ORTHO05D007260 1.5e-17 95.1 233 38.6
Carub.0001s3439 Capsella rubella HOM05D006245 ORTHO05D007260 3.3e-17 94.0 87 59.8
CARHR035240 Cardamine hirsuta HOM05D006245 ORTHO05D007260 3.3e-17 94.0 271 33.9
Eucgr.L02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 3.3e-17 94.0 86 66.3
ATR0605G375 Amborella trichopoda HOM05D006245 ORTHO05D007260 4.8e-16 90.1 144 44.4
BcaB04g17767 Brassica carinata HOM05D006245 ORTHO05D007260 4.8e-16 90.1 274 32.1
THA.LOC104813184 Tarenaya hassleriana HOM05D006245 ORTHO05D007260 4.8e-16 90.1 324 31.2
Zm00001eb388050 Zea mays HOM05D006245 ORTHO05D007260 4.8e-16 90.1 92 59.8
CDE05G2672 Ceratophyllum demersum HOM05D006245 ORTHO05D007260 8.2e-16 89.4 88 60.2
Eucgr.F01824 Eucalyptus grandis HOM05D006245 ORTHO05D007260 8.2e-16 89.4 230 37.8
Eucgr.F02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 8.2e-16 89.4 87 59.8
A08p07630 Brassica napus HOM05D006245 ORTHO05D007260 1.4e-15 88.6 225 34.7
BraA08t32777Z Brassica rapa HOM05D006245 ORTHO05D007260 1.4e-15 88.6 225 34.7
Ah.15g097110 Amaranthus hybridus HOM05D000003 ORTHO05D000007 1.8e-15 88.2 120 43.3
BcaC07g37450 Brassica carinata HOM05D006245 ORTHO05D007260 3.1e-15 87.4 231 34.2
C08p09220 Brassica napus HOM05D006245 ORTHO05D007260 3.1e-15 87.4 231 34.2
BolC8t47771H Brassica oleracea HOM05D006245 ORTHO05D007260 3.1e-15 87.4 231 34.2
Duzib106G1614 Durio zibethinus HOM05D006245 ORTHO05D007260 4.1e-15 87.0 72 65.3
Sp1g32200 Schrenkiella parvula HOM05D006245 ORTHO05D007260 9.1e-15 85.9 268 33.2
HPP92_003836 Vanilla planifolia HOM05D006245 ORTHO05D007260 2.0e-14 84.7 274 33.9
Ah.14g080910 Amaranthus hybridus HOM05D000003 ORTHO05D000007 4.5e-14 83.6 123 36.6
Ah.13g067160 Amaranthus hybridus HOM05D017406 ORTHO05D000007 7.7e-14 82.8 139 37.4
Sabra05G0199800 Salix brachista HOM05D006245 ORTHO05D007260 7.7e-14 82.8 249 29.7
Ah.03g143450 Amaranthus hybridus HOM05D000003 ORTHO05D000007 1.7e-13 81.6 140 39.3
Thhalv10004635m.g Eutrema salsugineum HOM05D006245 ORTHO05D007260 2.2e-13 81.3 298 31.9
Gohir.A05G409532 Gossypium hirsutum HOM05D006245 ORTHO05D007260 5.0e-13 80.1 104 51.0
Os06g0622700 Oryza sativa ssp. japonica HOM05D006245 ORTHO05D007260 6.5e-13 79.7 144 39.6
Gorai.006G220700 Gossypium raimondii HOM05D006245 ORTHO05D007260 8.5e-13 79.3 53 73.6
Nitab4.5_0000464g0100 Nicotiana tabacum HOM05D006245 ORTHO05D007260 2.5e-12 77.8 66 66.7
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 3.2e-12 77.4 127 40.9
Ah.12g061560 Amaranthus hybridus HOM05D000003 ORTHO05D000007 7.2e-12 76.3 119 39.5
Ah.12g063330 Amaranthus hybridus HOM05D000003 ORTHO05D000007 2.1e-11 74.7 135 34.1
Ah.04g159630 Amaranthus hybridus HOM05D000003 ORTHO05D000007 3.6e-11 73.9 162 37.7
Gohir.D08G092150 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.0e-10 72.4 87 48.3
Ah.08g219860 Amaranthus hybridus HOM05D017406 ORTHO05D000007 4.0e-10 70.5 129 41.1
Gorai.004G097700 Gossypium raimondii HOM05D006245 ORTHO05D007260 5.2e-10 70.1 43 76.7
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 5.7e-09 66.6 82 57.3
AUR62033078 Chenopodium quinoa HOM05D000408 ORTHO05D001664 1.3e-08 65.5 50 74.0
Ah.08g221920 Amaranthus hybridus HOM05D021453 ORTHO05D007260 1.1e-07 62.4 86 44.2
CANSAT01G2288 Cannabis sativa HOM05D000003 ORTHO05D000006 2.4e-07 61.2 52 53.8
Ah.02g122310 Amaranthus hybridus HOM05D000003 ORTHO05D000007 4.1e-07 60.5 72 40.3
Ah.11g040280 Amaranthus hybridus HOM05D000003 ORTHO05D011611 4.1e-07 60.5 90 37.8
CANSAT78G1995 Cannabis sativa HOM05D000003 ORTHO05D000007 1.2e-06 58.9 89 36.0
Ah.14g082280 Amaranthus hybridus HOM05D021453 ORTHO05D000007 1.6e-06 58.5 120 35.8
CANSAT78G1658 Cannabis sativa HOM05D000003 ORTHO05D000007 3.5e-06 57.4 47 53.2
Ah.10g029790 Amaranthus hybridus HOM05D000003 ORTHO05D000007 5.9e-06 56.6 51 47.1
EL10Ac1g02104 Beta vulgaris HOM05D000003 ORTHO05D011611 5.9e-06 56.6 60 41.7
CANSAT25G2441 Cannabis sativa HOM05D000003 ORTHO05D000007 7.7e-06 56.2 52 48.1
CANSAT64G2710 Cannabis sativa HOM05D000003 ORTHO05D000007 7.7e-06 56.2 75 38.7


User provided reference genes

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