Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 8.4e-40 166.8 97 100.0
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 3.8e-32 141.4 90 88.9
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 8.4e-32 140.2 91 87.9
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 1.9e-31 139.0 93 84.9
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.2e-31 138.3 93 84.9
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.2e-31 138.3 93 84.9
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 5.4e-31 137.5 93 84.9
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 7.1e-31 137.1 93 84.9
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 9.3e-31 136.7 93 83.9
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 9.3e-31 136.7 93 84.9
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.6e-30 136.0 93 83.9
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 1.6e-30 136.0 91 84.6
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.6e-30 136.0 90 85.6
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 1.6e-30 136.0 93 82.8
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 2.1e-30 135.6 93 78.5
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 2.1e-30 135.6 93 83.9
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 2.1e-30 135.6 93 83.9
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 4.6e-30 134.4 93 81.7
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 7.9e-30 133.7 93 78.5
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 7.9e-30 133.7 93 82.8
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 7.9e-30 133.7 93 82.8
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 1.0e-29 133.3 91 84.6
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 1.0e-29 133.3 93 80.6
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 1.0e-29 133.3 93 76.3
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.0e-29 133.3 91 82.4
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 1.0e-29 133.3 93 81.7
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 1.0e-29 133.3 93 77.4
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.3e-29 132.9 90 83.3
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.3e-29 132.9 90 83.3
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.3e-29 132.9 90 83.3
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 1.3e-29 132.9 93 80.6
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.8e-29 132.5 93 77.4
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 1.8e-29 132.5 93 77.4
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.8e-29 132.5 93 77.4
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 1.8e-29 132.5 93 77.4
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 1.8e-29 132.5 93 77.4
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.8e-29 132.5 93 80.6
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 3.9e-29 131.3 93 79.6
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 3.9e-29 131.3 93 79.6
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 5.1e-29 131.0 93 76.3
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 5.1e-29 131.0 93 79.6
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 5.1e-29 131.0 93 80.6
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 5.1e-29 131.0 93 80.6
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 6.7e-29 130.6 93 75.3
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 6.7e-29 130.6 91 78.0
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 6.7e-29 130.6 91 78.0
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 6.7e-29 130.6 93 79.6
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 8.7e-29 130.2 91 75.8
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 8.7e-29 130.2 90 83.3
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 1.1e-28 129.8 93 78.5
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.5e-28 129.4 93 78.5
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 1.5e-28 129.4 90 80.0
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 1.5e-28 129.4 91 78.0
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 1.5e-28 129.4 93 78.5
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.5e-28 129.4 93 78.5
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.5e-28 129.4 93 78.5
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 1.5e-28 129.4 93 77.4
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 1.5e-28 129.4 91 76.9
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 1.5e-28 129.4 91 78.0
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 1.9e-28 129.0 91 76.9
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 1.9e-28 129.0 90 77.8
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 1.9e-28 129.0 90 77.8
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.9e-28 129.0 91 79.1
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.9e-28 129.0 93 78.5
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.9e-28 129.0 93 78.5
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.3e-28 128.3 91 79.1
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 4.3e-28 127.9 93 77.4
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 7.4e-28 127.1 90 75.6
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 9.6e-28 126.7 89 78.7
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 9.6e-28 126.7 90 78.9
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 9.6e-28 126.7 90 78.9
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 9.6e-28 126.7 91 78.0
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 9.6e-28 126.7 91 78.0
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 1.3e-27 126.3 90 80.0
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.6e-27 125.9 90 78.9
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 1.6e-27 125.9 90 77.8
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 2.8e-27 125.2 93 74.2
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.8e-27 125.2 91 76.9
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 4.8e-27 124.4 93 77.4
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 6.2e-27 124.0 92 75.0
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 8.1e-27 123.6 92 76.1
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 8.1e-27 123.6 91 75.8
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 1.1e-26 123.2 93 74.2
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 2.4e-26 122.1 90 75.6
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 3.1e-26 121.7 91 78.0
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 4.0e-26 121.3 89 76.4
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 4.0e-26 121.3 89 76.4
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 5.3e-26 120.9 122 63.1
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 6.9e-26 120.6 90 75.6
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 6.9e-26 120.6 92 73.9
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 6.9e-26 120.6 92 73.9
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 6.9e-26 120.6 92 73.9
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 9.0e-26 120.2 91 75.8
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 9.0e-26 120.2 90 74.4
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 1.2e-25 119.8 90 74.4
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.5e-25 119.4 88 76.1
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 2.0e-25 119.0 93 72.0
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 2.0e-25 119.0 90 74.4
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 4.5e-25 117.9 93 71.0
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 4.5e-25 117.9 93 72.0
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 7.6e-25 117.1 92 71.7
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 7.6e-25 117.1 95 71.6
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 3.8e-24 114.8 90 71.1
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 3.8e-24 114.8 90 71.1
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 3.8e-24 114.8 78 83.3
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 4.9e-24 114.4 93 69.9
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 4.9e-24 114.4 91 69.2
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 4.9e-24 114.4 91 73.6
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.4e-23 112.8 90 70.0
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 2.4e-23 112.1 93 68.8
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 4.2e-23 111.3 91 70.3
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 7.1e-23 110.5 93 66.7
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 9.3e-23 110.2 78 79.5
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 1.6e-22 109.4 145 53.1
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 7.9e-22 107.1 75 81.3
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 8.7e-21 103.6 78 74.4
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 1.9e-20 102.4 89 62.9
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.9e-20 102.4 64 87.5
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.9e-20 102.4 64 87.5
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 9.6e-20 100.1 93 62.4
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 1.8e-18 95.9 93 62.4
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.2e-17 93.2 93 63.4
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 2.2e-16 89.0 90 60.0
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 3.8e-16 88.2 90 57.8
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 4.9e-16 87.8 90 58.9
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 1.3e-08 63.2 91 41.8


User provided reference genes

Program Settings