Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 1.8e-123 446.0 243 100.0
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 6.2e-84 314.7 255 72.9
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 8.2e-68 261.2 236 64.8
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 1.3e-65 253.8 238 60.9
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 3.8e-65 252.3 253 59.7
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 1.4e-64 250.4 237 62.0
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 1.9e-64 250.0 234 59.4
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 4.2e-64 248.8 232 60.8
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 2.1e-63 246.5 258 57.8
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 2.7e-63 246.1 234 62.8
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 4.6e-63 245.4 234 59.8
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 6.1e-63 245.0 230 61.3
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 1.8e-62 243.4 238 59.7
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 1.8e-62 243.4 248 59.3
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 2.3e-62 243.0 234 59.8
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 5.1e-62 241.9 227 58.1
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 6.7e-62 241.5 241 60.2
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 2.5e-61 239.6 234 60.3
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 4.3e-61 238.8 234 59.0
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 5.7e-61 238.4 224 60.3
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 7.4e-61 238.0 231 58.4
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 1.3e-60 237.3 234 58.5
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 1.3e-60 237.3 244 58.6
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 1.3e-60 237.3 237 59.5
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 1.7e-60 236.9 250 57.6
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.2e-60 236.5 235 61.7
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 2.8e-60 236.1 244 57.8
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 1.8e-59 233.4 234 59.8
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 3.1e-59 232.6 244 56.1
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 3.1e-59 232.6 230 57.8
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 4.1e-59 232.3 236 58.5
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 5.3e-59 231.9 236 58.5
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 6.9e-59 231.5 239 56.9
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 6.9e-59 231.5 244 56.6
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 9.1e-59 231.1 227 61.7
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 1.2e-58 230.7 245 58.0
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 5.9e-58 228.4 245 56.7
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 1.3e-57 227.3 249 55.0
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 1.3e-57 227.3 236 58.9
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 1.7e-57 226.9 241 56.0
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 1.7e-57 226.9 226 58.0
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 2.2e-57 226.5 227 59.9
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 3.8e-57 225.7 223 61.0
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 5.0e-57 225.3 226 58.0
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 6.5e-57 224.9 234 60.3
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 5.5e-56 221.9 241 56.0
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 7.2e-56 221.5 223 60.1
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 9.4e-56 221.1 246 56.1
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 3.6e-55 219.2 232 54.3
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 3.6e-55 219.2 234 59.0
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 3.6e-55 219.2 248 53.2
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 6.1e-55 218.4 230 56.5
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 6.1e-55 218.4 247 57.5
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 7.9e-55 218.0 228 57.0
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 7.9e-55 218.0 226 55.8
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.4e-54 217.2 231 55.4
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 3.0e-54 216.1 257 51.8
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 3.0e-54 216.1 257 51.8
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 5.1e-54 215.3 257 51.8
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 6.7e-54 214.9 238 52.9
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 6.7e-54 214.9 236 56.8
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 2.6e-53 213.0 240 53.8
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 3.3e-53 212.6 226 58.0
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 4.4e-53 212.2 255 54.9
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 7.4e-53 211.5 293 50.2
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.7e-52 210.3 243 54.7
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 1.7e-52 210.3 220 58.2
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 2.2e-52 209.9 249 52.6
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 4.8e-52 208.8 252 53.2
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 4.8e-52 208.8 249 53.4
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 6.3e-52 208.4 228 55.3
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 8.2e-52 208.0 240 50.4
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 2.4e-51 206.5 249 52.2
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 4.1e-51 205.7 254 53.5
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 5.3e-51 205.3 241 55.2
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 7.0e-51 204.9 221 54.3
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 7.0e-51 204.9 254 53.9
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 1.2e-50 204.1 231 53.2
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 1.2e-50 204.1 244 52.5
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 1.5e-50 203.8 248 52.0
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 2.6e-50 203.0 238 53.4
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 4.5e-50 202.2 204 61.8
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 5.9e-50 201.8 223 54.7
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 7.7e-50 201.4 231 54.5
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 1.3e-49 200.7 233 50.2
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 1.3e-49 200.7 233 50.2
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 1.3e-49 200.7 256 50.4
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 1.7e-49 200.3 230 50.0
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 1.7e-49 200.3 230 50.0
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 2.2e-49 199.9 240 50.4
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 2.2e-49 199.9 230 50.0
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 2.9e-49 199.5 239 50.6
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 2.9e-49 199.5 215 56.7
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 3.8e-49 199.1 240 50.0
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 5.0e-49 198.7 249 51.0
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 6.5e-49 198.4 234 49.6
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 1.1e-48 197.6 238 50.0
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 1.1e-48 197.6 240 50.4
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 1.5e-48 197.2 236 50.0
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 3.2e-48 196.1 224 57.6
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 7.2e-48 194.9 240 49.6
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 3.6e-47 192.6 229 49.8
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 4.7e-47 192.2 234 49.6
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 2.3e-46 189.9 229 49.3
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 2.6e-45 186.4 260 45.8
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 3.3e-45 186.0 243 46.1
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 3.7e-44 182.6 243 47.3
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 1.1e-43 181.0 245 48.6
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 1.2e-42 177.6 243 47.3
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 2.2e-41 173.3 243 46.5
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 1.4e-38 164.1 243 46.1
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 2.0e-37 160.2 122 70.5
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 1.1e-32 144.4 164 51.2
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 1.7e-28 130.6 281 37.0
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 1.8e-27 127.1 121 62.8
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 3.3e-24 116.3 150 47.3
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 9.5e-24 114.8 224 39.3
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 8.0e-23 111.7 127 49.6
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 4.4e-21 105.9 140 47.9
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 3.7e-20 102.8 137 46.0
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 5.4e-19 99.0 252 31.7
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 6.4e-12 75.5 188 33.0
Actinidia31584 Actinidia chinensis HOM05D005991 ORTHO05D007408 4.1e-11 72.8 202 34.2
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 1.8e-06 57.4 92 45.7


User provided reference genes

Program Settings