Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g042030 Amaranthus hybridus HOM05D006995 ORTHO05D008870 1.5e-38 162.5 93 100.0
Ah.11g051120 Amaranthus hybridus HOM05D006995 ORTHO05D008870 3.4e-30 134.8 84 94.0
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 5.1e-26 120.9 93 74.2
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 6.2e-24 114.0 93 72.0
AUR62008151 Chenopodium quinoa HOM05D006995 ORTHO05D008870 2.5e-17 92.0 59 78.0
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 1.8e-15 85.9 94 57.4
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 2.4e-15 85.5 91 56.0
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 3.1e-15 85.1 91 53.8
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 3.4e-14 81.6 91 54.9
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 9.9e-14 80.1 91 59.3
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 1.7e-13 79.3 91 57.1
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 3.8e-13 78.2 91 60.4
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 4.9e-13 77.8 90 54.4
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 4.9e-13 77.8 91 57.1
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 8.4e-13 77.0 90 50.0
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 1.1e-12 76.6 93 53.8
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 1.9e-12 75.9 91 58.2
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 1.9e-12 75.9 93 53.8
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 1.9e-12 75.9 94 57.4
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 2.4e-12 75.5 68 60.3
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 2.4e-12 75.5 91 54.9
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 3.2e-12 75.1 91 54.9
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 4.2e-12 74.7 90 52.2
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 5.4e-12 74.3 68 58.8
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 5.4e-12 74.3 68 58.8
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 9.3e-12 73.6 90 51.1
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 9.3e-12 73.6 94 57.4
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 1.2e-11 73.2 91 53.8
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 1.2e-11 73.2 92 57.6
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 1.2e-11 73.2 91 54.9
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 2.1e-11 72.4 90 54.4
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 2.1e-11 72.4 90 54.4
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 2.1e-11 72.4 90 50.0
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 2.1e-11 72.4 90 53.3
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 2.7e-11 72.0 90 50.0
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 2.7e-11 72.0 91 52.7
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 3.5e-11 71.6 92 57.6
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 3.5e-11 71.6 90 52.2
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 7.8e-11 70.5 91 54.9
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 7.8e-11 70.5 90 53.3
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 7.8e-11 70.5 91 53.8
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 1.0e-10 70.1 90 53.3
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 1.3e-10 69.7 90 54.4
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 1.3e-10 69.7 94 52.1
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 1.3e-10 69.7 90 51.1
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 1.7e-10 69.3 92 56.5
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 1.7e-10 69.3 90 53.3
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 1.7e-10 69.3 90 53.3
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 1.7e-10 69.3 91 54.9
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 1.7e-10 69.3 68 54.4
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 2.3e-10 68.9 91 56.0
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 3.0e-10 68.6 91 54.9
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 3.0e-10 68.6 91 54.9
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 3.0e-10 68.6 90 53.3
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 3.0e-10 68.6 93 52.7
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 3.9e-10 68.2 90 48.9
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 3.9e-10 68.2 90 48.9
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 5.1e-10 67.8 92 51.1
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 6.6e-10 67.4 91 53.8
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 6.6e-10 67.4 90 48.9
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 8.7e-10 67.0 92 55.4
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 8.7e-10 67.0 90 54.4
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 8.7e-10 67.0 93 51.6
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 1.1e-09 66.6 90 52.2
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 1.1e-09 66.6 90 51.1
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 1.5e-09 66.2 93 50.5
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 1.9e-09 65.9 91 50.5
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.9e-09 65.9 90 48.9
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.9e-09 65.9 90 48.9
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 2.5e-09 65.5 90 47.8
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 3.3e-09 65.1 90 53.3
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 3.3e-09 65.1 90 47.8
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 3.3e-09 65.1 90 47.8
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 4.3e-09 64.7 76 55.3
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 5.6e-09 64.3 86 50.0
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 5.6e-09 64.3 92 54.3
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 5.6e-09 64.3 86 50.0
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 5.6e-09 64.3 86 50.0
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 7.3e-09 63.9 90 46.7
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 9.6e-09 63.5 97 48.5
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 1.3e-08 63.2 90 50.0
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 2.8e-08 62.0 66 53.0
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 2.8e-08 62.0 66 53.0
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 8.1e-08 60.5 65 52.3
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 1.4e-07 59.7 62 51.6
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 1.4e-07 59.7 99 51.5
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 1.4e-07 59.7 99 51.5
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 1.4e-07 59.7 90 50.0
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 4.0e-07 58.2 66 51.5
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 4.0e-07 58.2 59 66.1
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 1.2e-06 56.6 90 47.8
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 1.2e-06 56.6 91 48.4
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 2.6e-06 55.5 66 53.0


User provided reference genes

Program Settings