Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g041420 Amaranthus hybridus HOM05D000003 ORTHO05D000006 3.1e-161 571.6 269 100.0
Ah.02g121180 Amaranthus hybridus HOM05D000003 ORTHO05D000006 3.0e-55 219.5 194 59.3
Ah.06g186620 Amaranthus hybridus HOM05D000024 ORTHO05D000006 1.0e-39 167.9 120 65.0
Ah.07g200070 Amaranthus hybridus HOM05D000003 ORTHO05D000007 1.8e-28 130.6 103 62.1
Ah.11g042380 Amaranthus hybridus HOM05D000003 ORTHO05D000006 1.8e-28 130.6 211 42.7
Sopen10g008120 Solanum pennellii HOM05D000003 ORTHO05D000004 7.8e-27 125.2 354 28.0
Ah.10g027070 Amaranthus hybridus HOM05D000003 ORTHO05D000007 6.6e-26 122.1 129 52.7
Sopen00g009000 Solanum pennellii HOM05D000003 ORTHO05D000004 2.2e-21 107.1 352 27.0
Ah.10g026680 Amaranthus hybridus HOM05D000003 ORTHO05D000004 9.2e-20 101.7 294 26.2
Sopen00g009450 Solanum pennellii HOM05D000003 ORTHO05D000004 2.7e-19 100.1 322 26.4
AUR62013933 Chenopodium quinoa HOM05D000003 ORTHO05D000006 3.5e-19 99.8 137 38.7
PSO170G0824 Papaver somniferum HOM05D000003 ORTHO05D000004 1.0e-18 98.2 325 24.9
Ah.02g118420 Amaranthus hybridus HOM05D000003 ORTHO05D000006 1.7e-18 97.4 227 29.1
Sopen00g008000 Solanum pennellii HOM05D000003 ORTHO05D000004 1.7e-18 97.4 322 27.3
Sopen08g014400 Solanum pennellii HOM05D000003 ORTHO05D000004 5.0e-18 95.9 324 25.9
CANSAT25G2861 Cannabis sativa HOM05D000003 ORTHO05D000006 2.5e-17 93.6 283 29.7
Sopen05g013420 Solanum pennellii HOM05D000003 ORTHO05D000004 3.3e-17 93.2 321 26.5
Ah.01g011890 Amaranthus hybridus HOM05D000003 ORTHO05D000006 4.3e-17 92.8 236 28.4
Sopen04g018170 Solanum pennellii HOM05D000003 ORTHO05D000004 5.6e-17 92.4 304 26.0
Sopen00g010500 Solanum pennellii HOM05D000003 ORTHO05D000004 9.5e-17 91.7 259 28.6
Sopen00g009820 Solanum pennellii HOM05D000003 ORTHO05D000004 1.2e-16 91.3 320 26.6
PSO063G2617 Papaver somniferum HOM05D000003 ORTHO05D000004 1.6e-16 90.9 331 24.5
Aqoxy2G01976 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 2.1e-16 90.5 348 24.4
Sopen02g001330 Solanum pennellii HOM05D000003 ORTHO05D000004 4.7e-16 89.4 250 27.6
EL10Ac4g08716 Beta vulgaris HOM05D000003 ORTHO05D000006 1.1e-15 88.2 115 40.0
PGSC0003DMG400004512 Solanum tuberosum HOM05D000003 ORTHO05D000006 1.8e-15 87.4 138 38.4
Sopen00g008350 Solanum pennellii HOM05D000003 ORTHO05D000004 2.3e-15 87.0 321 25.9
Sopen00g007050 Solanum pennellii HOM05D000003 ORTHO05D000004 4.0e-15 86.3 216 29.6
Sopen09g011430 Solanum pennellii HOM05D000003 ORTHO05D000004 4.0e-15 86.3 293 25.6
Aqoxy1G03910 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.2e-15 85.9 348 23.0
CANSAT21G0612 Cannabis sativa HOM05D000003 ORTHO05D000006 5.2e-15 85.9 350 24.0
PSO591G0325 Papaver somniferum HOM05D000003 ORTHO05D000004 1.2e-14 84.7 244 29.9
Sopen00g010970 Solanum pennellii HOM05D000003 ORTHO05D000006 2.6e-14 83.6 302 25.5
Sopen00g004670 Solanum pennellii HOM05D000003 ORTHO05D000004 5.8e-14 82.4 322 23.9
Sopen12g011700 Solanum pennellii HOM05D000003 ORTHO05D000004 7.5e-14 82.0 328 25.9
Sopen00g004660 Solanum pennellii HOM05D000003 ORTHO05D000004 1.3e-13 81.3 304 24.7
Sopen00g010250 Solanum pennellii HOM05D000003 ORTHO05D000004 2.2e-13 80.5 282 26.2
Ah.06g186180 Amaranthus hybridus HOM05D000003 ORTHO05D000007 4.9e-13 79.3 58 69.0
Oeu017073.1 Olea europaea HOM05D000003 ORTHO05D000006 4.9e-13 79.3 147 34.0
Sopen00g004600 Solanum pennellii HOM05D000003 ORTHO05D000004 1.1e-12 78.2 139 33.8
Sopen00g005320 Solanum pennellii HOM05D000003 ORTHO05D000004 1.1e-12 78.2 282 24.5
Sopen01g024500 Solanum pennellii HOM05D000003 ORTHO05D000004 1.1e-12 78.2 139 33.8
PSO675G6702 Papaver somniferum HOM05D000003 ORTHO05D000004 2.4e-12 77.0 228 25.9
PGR042G0383 Punica granatum HOM05D000003 ORTHO05D000006 3.2e-12 76.6 142 29.6
PGR102G0991 Punica granatum HOM05D000003 ORTHO05D000004 4.1e-12 76.3 260 23.8
Sopen00g006870 Solanum pennellii HOM05D000003 ORTHO05D000004 4.1e-12 76.3 284 23.9
Sopen00g004700 Solanum pennellii HOM05D000003 ORTHO05D000004 7.0e-12 75.5 139 33.1
Sopen00g007130 Solanum pennellii HOM05D000003 ORTHO05D000004 9.2e-12 75.1 282 24.1
Sopen00g011080 Solanum pennellii HOM05D000003 ORTHO05D000006 9.2e-12 75.1 322 21.7
Sopen07g012090 Solanum pennellii HOM05D000003 ORTHO05D009932 9.2e-12 75.1 138 33.3
SHI02805 Sapria himalayana HOM05D000003 ORTHO05D000004 1.2e-11 74.7 319 23.5
Sopen00g009650 Solanum pennellii HOM05D000003 ORTHO05D000004 1.2e-11 74.7 137 32.8
Sopen08g007800 Solanum pennellii HOM05D000003 ORTHO05D000004 1.2e-11 74.7 139 33.1
PGR083G1813 Punica granatum HOM05D000003 ORTHO05D000004 1.6e-11 74.3 109 32.1
SHI27543 Sapria himalayana HOM05D000003 ORTHO05D000004 1.6e-11 74.3 350 24.6
PSO541G4805 Papaver somniferum HOM05D000003 ORTHO05D000004 2.7e-11 73.6 276 27.2
Sopen05g020920 Solanum pennellii HOM05D000003 ORTHO05D000004 3.5e-11 73.2 321 25.2
CANSAT21G0605 Cannabis sativa HOM05D000003 ORTHO05D000006 4.6e-11 72.8 304 24.3
Sopen03g013400 Solanum pennellii HOM05D000003 ORTHO05D000004 6.0e-11 72.4 139 33.1
PSO170G0886 Papaver somniferum HOM05D000003 ORTHO05D000006 1.0e-10 71.6 300 23.0
Nitab4.5_0007744g0020 Nicotiana tabacum HOM05D000003 ORTHO05D000006 1.3e-10 71.2 139 30.9
Sopen00g005010 Solanum pennellii HOM05D000003 ORTHO05D000004 1.3e-10 71.2 139 33.1
CANSAT80G0638 Cannabis sativa HOM05D000003 ORTHO05D000006 1.7e-10 70.9 308 25.3
Nitab4.5_0002317g0030 Nicotiana tabacum HOM05D000003 ORTHO05D000006 1.7e-10 70.9 285 26.0
Oeu002445.1 Olea europaea HOM05D000003 ORTHO05D000006 1.7e-10 70.9 317 20.5
CANSAT11G0356 Cannabis sativa HOM05D000003 ORTHO05D000006 3.0e-10 70.1 318 24.5
SHI14472 Sapria himalayana HOM05D000003 ORTHO05D000004 5.0e-10 69.3 254 27.2
AUR62034051 Chenopodium quinoa HOM05D000003 ORTHO05D000006 6.6e-10 68.9 73 41.1
Duzib212G0877 Durio zibethinus HOM05D000003 ORTHO05D000006 6.6e-10 68.9 142 33.8
Ah.07g206060 Amaranthus hybridus HOM05D000003 ORTHO05D000006 8.6e-10 68.6 138 31.9
BcaB02g11235 Brassica carinata HOM05D000003 ORTHO05D000007 1.1e-09 68.2 257 25.3
CANSAT54G0332 Cannabis sativa HOM05D000003 ORTHO05D000006 1.1e-09 68.2 136 30.1
SHI50904 Sapria himalayana HOM05D000003 ORTHO05D000006 1.1e-09 68.2 254 26.8
vmacro07114 Vaccinium macrocarpon HOM05D000003 ORTHO05D000283 1.1e-09 68.2 186 25.8
CANSAT25G1919 Cannabis sativa HOM05D000003 ORTHO05D000006 1.9e-09 67.4 278 24.5
Aqoxy1G02446 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 2.5e-09 67.0 135 30.4
EL10Ac4g09271 Beta vulgaris HOM05D000003 ORTHO05D000006 2.5e-09 67.0 126 31.0
Dinv39770 Davidia involucrata HOM05D000003 ORTHO05D000007 2.5e-09 67.0 245 25.7
RcHm_v2.0_Chr5g0074731 Rosa chinensis HOM05D000003 ORTHO05D000004 2.5e-09 67.0 249 25.7
CANSAT54G2921 Cannabis sativa HOM05D000003 ORTHO05D000006 3.3e-09 66.6 141 29.1
BcaC03g18383 Brassica carinata HOM05D000003 ORTHO05D000006 5.6e-09 65.9 279 22.2
CSS0044337 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.6e-09 65.9 115 31.3
Nitab4.5_0001007g0060 Nicotiana tabacum HOM05D000003 ORTHO05D000006 5.6e-09 65.9 192 23.4
Oeu061417.1 Olea europaea HOM05D000003 ORTHO05D000006 7.3e-09 65.5 333 21.0
SHI20791 Sapria himalayana HOM05D000003 ORTHO05D000004 7.3e-09 65.5 246 26.0
EL10Ac6g14497 Beta vulgaris HOM05D000003 ORTHO05D000007 9.5e-09 65.1 189 27.5
Dinv29992 Davidia involucrata HOM05D000024 ORTHO05D000006 9.5e-09 65.1 103 32.0
ECA246G1591 Erigeron canadensis HOM05D000004 ORTHO05D000002 9.5e-09 65.1 144 30.6
SHI34677 Sapria himalayana HOM05D000003 ORTHO05D000004 9.5e-09 65.1 345 22.6
SHI49151 Sapria himalayana HOM05D000003 ORTHO05D000004 9.5e-09 65.1 254 26.4
BcaC07g37750 Brassica carinata HOM05D000003 ORTHO05D000006 1.2e-08 64.7 150 33.3
ECA246G2828 Erigeron canadensis HOM05D000006 ORTHO05D000004 1.2e-08 64.7 144 30.6
Ah.02g122350 Amaranthus hybridus HOM05D000003 ORTHO05D000006 1.6e-08 64.3 69 44.9
BcaB07g30860 Brassica carinata HOM05D000003 ORTHO05D000007 1.6e-08 64.3 355 22.0
ECA247G1136 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.6e-08 64.3 144 29.9
Potri.010G033266 Populus trichocarpa HOM05D000003 ORTHO05D000006 1.6e-08 64.3 230 23.0
SHI25412 Sapria himalayana HOM05D000003 ORTHO05D000004 1.6e-08 64.3 248 27.8
Hund22672 Selenicereus undatus HOM05D000003 ORTHO05D000006 1.6e-08 64.3 129 24.8
Nitab4.5_0001280g0020 Nicotiana tabacum HOM05D000003 ORTHO05D000006 2.1e-08 63.9 110 31.8
PSO541G4973 Papaver somniferum HOM05D000003 ORTHO05D000004 2.1e-08 63.9 88 36.4
PGR083G1806 Punica granatum HOM05D000003 ORTHO05D000007 2.1e-08 63.9 100 29.0
SHI25410 Sapria himalayana HOM05D000003 ORTHO05D000004 2.1e-08 63.9 143 35.7
SHI35540 Sapria himalayana HOM05D000003 ORTHO05D000004 2.1e-08 63.9 246 26.0
A03p34860 Brassica napus HOM05D000003 ORTHO05D000007 2.8e-08 63.5 152 28.3
CANSAT11G1716 Cannabis sativa HOM05D000003 ORTHO05D000006 2.8e-08 63.5 136 27.9
CANSAT56G4527 Cannabis sativa HOM05D000003 ORTHO05D000006 2.8e-08 63.5 189 32.3
HanXRQChr03g0079511 Helianthus annuus HOM05D000003 ORTHO05D000004 2.8e-08 63.5 138 31.2
MBI14_g14765_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 2.8e-08 63.5 182 29.1
Hund30059 Selenicereus undatus HOM05D000003 ORTHO05D000006 2.8e-08 63.5 138 25.4
FvH4_3g29013 Fragaria vesca HOM05D000003 ORTHO05D000006 3.6e-08 63.2 142 31.0
PSO384G2976 Papaver somniferum HOM05D000003 ORTHO05D000006 3.6e-08 63.2 141 27.7
CANSAT54G2584 Cannabis sativa HOM05D000003 ORTHO05D000006 4.7e-08 62.8 245 22.4
Hund10220 Selenicereus undatus HOM05D000003 ORTHO05D000007 4.7e-08 62.8 269 20.4
Oeu061661.1 Olea europaea HOM05D000003 ORTHO05D000006 6.2e-08 62.4 102 34.3
PSO170G0423 Papaver somniferum HOM05D000003 ORTHO05D000004 6.2e-08 62.4 144 28.5
SHI28230 Sapria himalayana HOM05D000003 ORTHO05D000004 6.2e-08 62.4 246 26.0
Manes.10G001700 Manihot esculenta HOM05D000003 ORTHO05D000006 8.1e-08 62.0 135 25.9
PSO170G6022 Papaver somniferum HOM05D000003 ORTHO05D000006 8.1e-08 62.0 119 31.1
CAN.G308.63 Capsicum annuum HOM05D000003 ORTHO05D000006 1.1e-07 61.6 139 28.1
PSO357G0682 Papaver somniferum HOM05D000003 ORTHO05D000004 1.1e-07 61.6 141 28.4
PSO782G3859 Papaver somniferum HOM05D000003 ORTHO05D000004 1.1e-07 61.6 116 31.9
Potri.005G151275 Populus trichocarpa HOM05D000003 ORTHO05D000006 1.4e-07 61.2 309 22.7
SHI22947 Sapria himalayana HOM05D000003 ORTHO05D000004 1.4e-07 61.2 246 26.0
THA.LOC104820715 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 1.4e-07 61.2 142 27.5
Dinv01322 Davidia involucrata HOM05D000003 ORTHO05D000007 1.8e-07 60.8 140 30.7
Oeu041654.1 Olea europaea HOM05D000003 ORTHO05D000006 1.8e-07 60.8 324 21.6
Potri.012G063901 Populus trichocarpa HOM05D000003 ORTHO05D000006 1.8e-07 60.8 309 22.7
CANSAT54G1272 Cannabis sativa HOM05D000003 ORTHO05D000006 2.3e-07 60.5 135 30.4
BcaC09g50945 Brassica carinata HOM05D000003 ORTHO05D000007 3.1e-07 60.1 142 30.3
PSO170G0227 Papaver somniferum HOM05D000003 ORTHO05D000006 3.1e-07 60.1 116 31.9
Sopen09g016100 Solanum pennellii HOM05D000003 ORTHO05D000004 4.0e-07 59.7 101 30.7
Aqoxy3G01956 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 5.2e-07 59.3 290 22.8
Oeu042306.1 Olea europaea HOM05D000003 ORTHO05D000006 5.2e-07 59.3 135 31.9
Aqoxy2G01321 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 6.8e-07 58.9 268 21.6
CANSAT54G1020 Cannabis sativa HOM05D000003 ORTHO05D000004 6.8e-07 58.9 141 28.4
ECA248G0013 Erigeron canadensis HOM05D000006 ORTHO05D000004 6.8e-07 58.9 144 27.1
HanXRQChr01g0016641 Helianthus annuus HOM05D000003 ORTHO05D000004 6.8e-07 58.9 144 29.2
Medtr1g059490 Medicago truncatula HOM05D000003 ORTHO05D000006 6.8e-07 58.9 232 23.3
PSO478G4408 Papaver somniferum HOM05D000003 ORTHO05D000006 6.8e-07 58.9 133 31.6
Rhsim06G0010400 Rhododendron simsii HOM05D000002 ORTHO05D000047 6.8e-07 58.9 101 31.7
BcaB01g06265 Brassica carinata HOM05D003728 ORTHO05D000007 1.2e-06 58.2 136 34.6
BcaB05g24536 Brassica carinata HOM05D000003 ORTHO05D000283 1.2e-06 58.2 339 18.6
BcaB06g25353 Brassica carinata HOM05D000003 ORTHO05D000283 1.2e-06 58.2 335 21.5
CANSAT25G0549 Cannabis sativa HOM05D000003 ORTHO05D000006 1.2e-06 58.2 135 28.1
ECA233G0515 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.2e-06 58.2 155 28.4
CANSAT56G0083 Cannabis sativa HOM05D000003 ORTHO05D000006 1.5e-06 57.8 137 27.0
ECA238G4169 Erigeron canadensis HOM05D000014 ORTHO05D000004 1.5e-06 57.8 131 29.8
PSO017G3479 Papaver somniferum HOM05D000003 ORTHO05D000004 1.5e-06 57.8 141 27.0
PSO407G0311 Papaver somniferum HOM05D000003 ORTHO05D000006 1.5e-06 57.8 235 22.6
BcaNung00490 Brassica carinata HOM05D000003 ORTHO05D000006 2.0e-06 57.4 149 30.2
CANSAT35G1349 Cannabis sativa HOM05D000003 ORTHO05D000006 2.0e-06 57.4 114 32.5
ECA232G1284 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.0e-06 57.4 134 28.4
Nitab4.5_0001729g0050 Nicotiana tabacum HOM05D010714 ORTHO05D000006 2.0e-06 57.4 234 24.8
PSO675G0058 Papaver somniferum HOM05D000003 ORTHO05D000006 2.0e-06 57.4 198 24.2
vmacro21128 Vaccinium macrocarpon HOM05D000429 ORTHO05D000352 2.0e-06 57.4 178 24.7
BcaB01g03209 Brassica carinata HOM05D000003 ORTHO05D000006 2.6e-06 57.0 218 22.5
ECA233G5370 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.6e-06 57.0 144 27.1
Sabra02G0165600 Salix brachista HOM05D000003 ORTHO05D000006 2.6e-06 57.0 155 23.9
Sopen00g012830 Solanum pennellii HOM05D000003 ORTHO05D000004 2.6e-06 57.0 304 24.0
TAR185G0004 Trochodendron aralioides HOM05D000003 ORTHO05D000006 2.6e-06 57.0 134 26.1
BcaB07g33355 Brassica carinata HOM05D003728 ORTHO05D000006 3.4e-06 56.6 145 31.7
BcaC07g37192 Brassica carinata HOM05D000003 ORTHO05D000006 3.4e-06 56.6 117 29.1
THA.LOC104820714 Tarenaya hassleriana HOM05D000003 ORTHO05D000006 3.4e-06 56.6 142 26.8
THA.LOC104822217 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 3.4e-06 56.6 142 26.8
Aqoxy3G01697 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 4.4e-06 56.2 134 28.4
BcaB06g25889 Brassica carinata HOM05D000003 ORTHO05D000007 4.4e-06 56.2 227 25.6
Duzib093G0655 Durio zibethinus HOM05D000003 ORTHO05D000006 4.4e-06 56.2 161 25.5
ECA240G3989 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.4e-06 56.2 142 27.5
ECA246G3015 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.4e-06 56.2 143 27.3
MBI13_g01617_MAGBIO Magnolia biondii HOM05D000024 ORTHO05D000006 4.4e-06 56.2 257 23.0
Aqoxy6G02662 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 5.8e-06 55.8 142 26.1
BcaC02g09817 Brassica carinata HOM05D000003 ORTHO05D000006 5.8e-06 55.8 146 32.9
BcaC07g39338 Brassica carinata HOM05D000003 ORTHO05D000007 5.8e-06 55.8 255 22.4
ECA238G0624 Erigeron canadensis HOM05D000003 ORTHO05D000004 5.8e-06 55.8 131 30.5
ECA240G4426 Erigeron canadensis HOM05D000006 ORTHO05D000004 5.8e-06 55.8 131 29.8
Peaxi162Scf01097g00411 Petunia axillaris HOM05D000003 ORTHO05D000006 5.8e-06 55.8 274 20.8
Sabra04G0097700 Salix brachista HOM05D000003 ORTHO05D000283 5.8e-06 55.8 246 22.4
BcaB05g21836 Brassica carinata HOM05D003728 ORTHO05D000006 7.5e-06 55.5 147 29.3
ECA246G4460 Erigeron canadensis HOM05D000003 ORTHO05D000004 7.5e-06 55.5 328 22.3
Sopen07g017460 Solanum pennellii HOM05D000003 ORTHO05D000006 7.5e-06 55.5 103 28.2
vmacro18598 Vaccinium macrocarpon HOM05D005812 ORTHO05D007232 7.5e-06 55.5 259 23.2
ECA248G1259 Erigeron canadensis HOM05D000003 ORTHO05D000004 9.9e-06 55.1 162 28.4


User provided reference genes

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