Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 2.5e-187 658.7 349 100.0
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 7.2e-142 507.7 344 78.8
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 1.2e-136 490.3 353 76.5
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.0e-132 477.2 362 72.7
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 1.6e-125 453.4 363 68.9
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 9.2e-113 411.0 343 63.3
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 2.3e-108 396.4 348 60.6
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 1.2e-107 394.0 341 61.9
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 9.8e-107 391.0 337 60.8
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 9.8e-107 391.0 340 60.3
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 1.3e-106 390.6 345 60.0
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 2.9e-106 389.4 345 59.7
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 3.7e-106 389.0 336 62.2
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 8.3e-106 387.9 344 60.2
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 2.4e-105 386.3 337 61.4
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 4.1e-105 385.6 344 58.7
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 5.4e-105 385.2 351 58.4
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 1.2e-104 384.0 341 61.0
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 2.7e-104 382.9 337 60.2
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 2.7e-104 382.9 339 59.9
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 2.7e-104 382.9 342 60.8
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 4.6e-104 382.1 336 60.1
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 4.6e-104 382.1 341 59.5
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.0e-103 380.9 337 59.9
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 1.0e-103 380.9 359 56.8
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 5.0e-103 378.6 346 58.1
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 6.6e-103 378.3 336 60.4
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 6.6e-103 378.3 336 60.4
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 1.1e-102 377.5 340 60.9
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 2.5e-102 376.3 346 57.8
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 2.5e-102 376.3 348 57.8
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.3e-102 375.9 337 59.6
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 3.3e-102 375.9 337 59.1
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 3.3e-102 375.9 347 57.9
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 4.3e-102 375.6 348 58.0
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 4.3e-102 375.6 345 59.7
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 5.6e-102 375.2 339 57.5
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 9.5e-102 374.4 339 59.0
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 3.6e-101 372.5 335 59.4
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 3.6e-101 372.5 349 57.6
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 6.2e-101 371.7 344 58.1
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 8.1e-101 371.3 340 59.4
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.1e-100 370.9 347 57.1
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 1.1e-100 370.9 343 57.7
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 1.1e-100 370.9 339 58.7
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 4.0e-100 369.0 336 57.4
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 4.0e-100 369.0 337 58.2
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 1.5e-99 367.1 355 56.3
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 1.5e-99 367.1 353 57.2
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 5.8e-99 365.2 347 55.9
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 9.9e-99 364.4 378 53.2
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.2e-98 363.2 360 56.7
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.4e-98 361.7 337 58.5
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 1.1e-97 360.9 362 55.2
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 1.4e-97 360.5 375 54.4
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 3.2e-97 359.4 337 58.2
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 9.2e-97 357.8 339 56.0
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 9.2e-97 357.8 339 56.3
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 1.6e-96 357.1 337 55.8
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 2.7e-96 356.3 360 54.7
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 4.6e-96 355.5 348 55.2
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 4.6e-96 355.5 339 55.8
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 4.6e-96 355.5 342 57.0
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 7.8e-96 354.8 339 55.2
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 7.8e-96 354.8 270 68.5
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 1.0e-95 354.4 347 54.5
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 3.9e-95 352.4 339 55.5
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 6.6e-95 351.7 344 54.7
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 8.6e-95 351.3 348 54.9
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 3.3e-94 349.4 348 52.9
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 3.3e-94 349.4 336 54.2
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 4.3e-94 349.0 339 55.2
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 7.3e-94 348.2 339 55.2
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 1.2e-93 347.4 339 54.6
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 2.8e-93 346.3 410 48.5
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 1.8e-92 343.6 370 51.1
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 4.0e-92 342.4 349 51.6
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 8.9e-92 341.3 335 53.7
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 3.4e-91 339.3 345 54.5
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 4.4e-91 339.0 343 52.8
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.7e-90 337.0 337 55.5
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 4.9e-90 335.5 312 58.0
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 4.1e-89 332.4 362 50.8
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 7.1e-89 331.6 323 56.7
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.6e-88 330.5 444 45.5
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 4.6e-88 328.9 455 44.2
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 1.3e-87 327.4 336 54.2
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.7e-87 327.0 346 54.9
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 2.3e-87 326.6 337 52.5
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 3.0e-87 326.2 306 58.8
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 5.1e-87 325.5 313 56.5
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 2.5e-86 323.2 277 59.6
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 2.5e-86 323.2 343 52.5
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 3.1e-84 316.2 295 56.6
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 1.2e-83 314.3 303 56.8
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 2.0e-83 313.5 310 54.8
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 4.4e-83 312.4 343 51.3
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.3e-82 310.8 313 54.6
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 3.8e-82 309.3 299 54.5
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 3.8e-82 309.3 332 54.2
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 8.4e-82 308.1 313 54.6
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 1.1e-81 307.8 295 56.6
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 3.2e-81 306.2 315 55.9
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 5.4e-81 305.4 311 52.7
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 2.1e-80 303.5 348 49.4
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.7e-80 303.1 324 53.4
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.0e-80 302.0 305 56.7
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.7e-79 300.4 303 56.4
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 8.7e-79 298.1 346 48.6
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 2.4e-76 290.0 553 37.4
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 9.0e-76 288.1 404 44.1
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 4.5e-75 285.8 255 60.0
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 7.1e-73 278.5 341 47.8
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.0e-71 273.1 226 62.8
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 4.8e-69 265.8 302 49.0
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 4.0e-68 262.7 310 50.0
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 6.7e-63 245.4 349 42.7
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 8.7e-63 245.0 306 46.1
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.1e-62 244.6 349 43.3
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 4.8e-61 239.2 249 51.8
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 1.4e-57 227.6 299 44.1
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 1.1e-52 211.5 163 63.8
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 1.8e-52 210.7 232 52.2
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 1.5e-51 207.6 151 66.2
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 3.4e-51 206.5 333 40.8
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 2.5e-49 200.3 205 52.2
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 2.5e-46 190.3 153 62.7
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 6.3e-45 185.7 366 34.2
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 6.3e-45 185.7 126 69.8
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 3.8e-42 176.4 335 32.2
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 1.4e-41 174.5 230 46.1
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 5.5e-41 172.6 323 35.3
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 1.1e-38 164.9 183 50.8
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.4e-38 162.9 201 48.8
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 1.3e-37 161.4 172 49.4
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 1.7e-37 161.0 302 36.4
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 2.6e-35 153.7 115 65.2
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 2.6e-35 153.7 115 65.2
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.9e-33 147.5 110 67.3
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 2.7e-32 143.7 105 70.5
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 6.1e-32 142.5 238 42.0
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 3.3e-30 136.7 86 80.2
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-25 119.4 151 45.0
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 2.0e-22 110.9 246 36.2
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 8.2e-21 105.5 111 52.3
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 3.1e-20 103.6 115 53.9
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 4.1e-20 103.2 123 45.5
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 1.7e-18 97.8 103 54.4
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 8.0e-16 89.0 321 26.5
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 7.7e-11 72.4 120 35.8
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 9.5e-09 65.5 236 29.7


User provided reference genes

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