Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 1.1e-130 469.9 239 100.0
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 1.0e-91 340.5 221 73.3
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 2.3e-67 259.6 168 73.8
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 1.1e-56 224.2 224 52.2
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 1.9e-56 223.4 228 51.8
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 4.1e-56 222.2 232 49.6
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 7.1e-56 221.5 225 52.4
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 2.7e-55 219.5 229 53.3
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 2.7e-55 219.5 226 51.3
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 3.5e-55 219.2 227 49.3
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 7.8e-55 218.0 224 50.4
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 1.0e-54 217.6 225 49.8
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 1.3e-54 217.2 229 50.7
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 1.7e-54 216.9 226 53.1
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 5.1e-54 215.3 227 53.3
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 6.6e-54 214.9 225 50.7
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 1.5e-53 213.8 227 47.6
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 1.5e-53 213.8 230 49.1
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 1.5e-53 213.8 232 49.1
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 1.5e-53 213.8 232 49.6
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 1.9e-53 213.4 236 50.4
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 5.6e-53 211.8 225 49.3
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 7.3e-53 211.5 227 48.0
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 1.1e-51 207.6 229 47.6
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 1.1e-51 207.6 232 49.6
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 5.2e-51 205.3 221 50.2
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 6.8e-51 204.9 226 51.3
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 1.2e-50 204.1 214 50.9
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 1.2e-50 204.1 229 48.5
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 2.6e-50 203.0 232 47.4
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 3.4e-50 202.6 228 46.5
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 4.4e-50 202.2 225 47.6
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 5.8e-50 201.8 206 54.4
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 5.8e-50 201.8 215 47.9
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 2.2e-49 199.9 233 45.9
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 3.8e-49 199.1 202 54.0
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 3.8e-49 199.1 228 46.5
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 6.4e-49 198.4 201 54.2
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 8.4e-49 198.0 238 44.5
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 1.1e-48 197.6 225 47.6
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 1.4e-48 197.2 225 48.9
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 7.8e-47 191.4 225 44.4
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 1.3e-46 190.7 167 59.3
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 8.7e-46 188.0 224 46.9
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 4.3e-45 185.7 224 46.9
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 4.3e-45 185.7 202 50.5
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 5.6e-45 185.3 226 45.6
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 6.2e-44 181.8 224 46.0
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 1.4e-43 180.6 224 46.4
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 1.8e-43 180.3 226 45.6
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 2.4e-43 179.9 224 46.4
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 1.7e-41 173.7 204 49.0
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 3.8e-41 172.6 226 44.2
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 1.9e-40 170.2 204 46.6
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 4.2e-40 169.1 226 44.2
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 1.2e-39 167.5 230 42.6
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 2.1e-39 166.8 211 41.7
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.7e-39 166.4 176 48.3
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 2.7e-39 166.4 176 48.3
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 3.0e-38 162.9 219 39.3
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 9.6e-37 157.9 190 48.4
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 1.3e-36 157.5 155 50.3
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 1.8e-35 153.7 202 44.6
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.8e-35 153.7 203 41.4
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 9.9e-34 147.9 230 40.9
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 2.2e-33 146.7 201 40.8
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 3.2e-32 142.9 103 63.1
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 1.0e-30 137.9 91 67.0
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 1.3e-30 137.5 133 54.1
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 6.2e-28 128.6 117 55.6
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 6.2e-28 128.6 117 55.6
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 1.4e-27 127.5 240 37.1
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 5.3e-27 125.6 227 37.9
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 2.0e-26 123.6 144 43.8
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 2.9e-25 119.8 137 51.8
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 4.9e-25 119.0 121 50.4
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 4.9e-25 119.0 121 50.4
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 8.4e-25 118.2 114 50.9
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 5.5e-24 115.5 157 42.0
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 2.1e-23 113.6 141 45.4
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 2.7e-23 113.2 137 45.3
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 6.0e-23 112.1 83 65.1
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 2.8e-20 103.2 137 43.8
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 6.2e-20 102.1 121 49.6
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 1.1e-19 101.3 118 47.5
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 1.4e-19 100.9 111 45.0
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 1.4e-19 100.9 156 39.1
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 1.8e-19 100.5 113 49.6
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.8e-19 100.5 100 53.0
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 3.1e-19 99.8 108 51.9
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.3e-17 94.4 117 39.3
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 4.9e-17 92.4 91 52.7
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 8.4e-17 91.7 132 40.9
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 1.4e-16 90.9 132 40.9
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 3.2e-16 89.7 228 26.8
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 5.5e-16 89.0 176 33.0
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 9.3e-16 88.2 100 43.0
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 1.2e-15 87.8 122 45.1
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.5e-13 80.9 66 57.6
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 5.7e-13 79.0 71 54.9
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 2.8e-12 76.6 73 47.9
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.1e-11 74.7 70 55.7
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 6.5e-09 65.5 74 51.4


User provided reference genes

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