Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 7.9e-105 383.6 176 100.0
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.7e-19 100.1 52 86.5
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.1e-18 97.4 52 84.6
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 7.3e-18 94.7 52 80.8
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 7.3e-18 94.7 52 80.8
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 9.6e-18 94.4 52 80.8
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 1.3e-17 94.0 52 78.8
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 1.6e-17 93.6 52 78.8
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 1.6e-17 93.6 52 76.9
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 2.1e-17 93.2 52 78.8
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 2.1e-17 93.2 52 78.8
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 2.1e-17 93.2 52 76.9
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 2.1e-17 93.2 52 82.7
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 2.1e-17 93.2 54 74.1
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 2.8e-17 92.8 52 78.8
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 2.8e-17 92.8 61 68.9
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 4.8e-17 92.0 52 76.9
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 4.8e-17 92.0 52 78.8
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 4.8e-17 92.0 52 78.8
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 6.2e-17 91.7 52 76.9
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 6.2e-17 91.7 52 82.7
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 6.2e-17 91.7 52 78.8
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 8.1e-17 91.3 52 76.9
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 1.1e-16 90.9 52 73.1
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 1.1e-16 90.9 52 73.1
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 1.1e-16 90.9 52 78.8
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 1.1e-16 90.9 52 76.9
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 1.1e-16 90.9 52 78.8
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 1.1e-16 90.9 52 78.8
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 1.8e-16 90.1 50 78.0
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 3.1e-16 89.4 52 76.9
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 3.1e-16 89.4 52 73.1
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 3.1e-16 89.4 52 75.0
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 4.0e-16 89.0 52 71.2
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 4.0e-16 89.0 52 71.2
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 4.0e-16 89.0 52 71.2
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 4.0e-16 89.0 52 78.8
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 4.0e-16 89.0 54 75.9
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 4.0e-16 89.0 52 75.0
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 5.3e-16 88.6 52 75.0
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 6.9e-16 88.2 52 76.9
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 1.2e-15 87.4 52 73.1
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 1.5e-15 87.0 52 76.9
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 1.5e-15 87.0 52 73.1
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 2.0e-15 86.7 51 72.5
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 2.6e-15 86.3 52 75.0
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 3.4e-15 85.9 52 71.2
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 3.4e-15 85.9 52 73.1
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 4.5e-15 85.5 52 71.2
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 4.5e-15 85.5 52 71.2
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 5.8e-15 85.1 52 73.1
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 5.8e-15 85.1 52 69.2
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 5.8e-15 85.1 52 69.2
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 5.8e-15 85.1 52 73.1
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 5.8e-15 85.1 52 75.0
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 5.8e-15 85.1 51 68.6
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 7.6e-15 84.7 49 75.5
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 7.6e-15 84.7 52 73.1
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 7.6e-15 84.7 52 71.2
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 9.9e-15 84.3 52 73.1
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 1.3e-14 84.0 52 73.1
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 1.3e-14 84.0 52 71.2
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 1.3e-14 84.0 52 75.0
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 1.7e-14 83.6 49 73.5
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 1.7e-14 83.6 52 73.1
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 2.9e-14 82.8 52 75.0
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 2.9e-14 82.8 52 71.2
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 3.8e-14 82.4 52 65.4
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 3.8e-14 82.4 52 65.4
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 3.8e-14 82.4 59 64.4
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 4.9e-14 82.0 52 69.2
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 4.9e-14 82.0 52 67.3
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 8.4e-14 81.3 52 69.2
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 8.4e-14 81.3 52 65.4
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 1.1e-13 80.9 52 69.2
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.1e-13 80.9 52 69.2
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 1.4e-13 80.5 52 67.3
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.9e-13 80.1 49 73.5
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 3.2e-13 79.3 52 67.3
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 5.4e-13 78.6 52 67.3
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 9.3e-13 77.8 45 71.1
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 9.3e-13 77.8 52 71.2
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 9.3e-13 77.8 52 61.5
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 2.1e-12 76.6 52 63.5
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 2.1e-12 76.6 52 65.4
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.6e-12 75.5 52 67.3
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 4.6e-12 75.5 52 67.3
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 6.0e-12 75.1 51 62.7
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 6.0e-12 75.1 52 61.5
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 6.0e-12 75.1 52 61.5
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 1.3e-11 73.9 52 65.4
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.3e-11 73.9 52 65.4
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 1.8e-11 73.6 52 63.5
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 3.9e-11 72.4 52 57.7
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 4.3e-10 68.9 44 70.5
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 4.3e-10 68.9 50 60.0
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 4.3e-10 68.9 50 60.0
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 1.6e-09 67.0 37 81.1
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 4.8e-09 65.5 52 53.8
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 4.0e-08 62.4 32 84.4
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 4.0e-08 62.4 36 77.8
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 7.6e-07 58.2 50 58.0


User provided reference genes

Program Settings