Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g041010 Amaranthus hybridus HOM05D006068 ORTHO05D007579 6.0e-150 534.3 289 100.0
AUR62036882 Chenopodium quinoa HOM05D006068 ORTHO05D007579 2.6e-97 359.4 281 73.3
EL10Ac1g01974 Beta vulgaris HOM05D006068 ORTHO05D007579 1.0e-96 357.5 305 70.2
Hund05115 Selenicereus undatus HOM05D006068 ORTHO05D007579 2.5e-87 326.2 293 66.2
Thecc.08G058200 Theobroma cacao HOM05D006068 ORTHO05D007579 2.8e-83 312.8 291 62.9
Duzib093G0636 Durio zibethinus HOM05D006068 ORTHO05D007579 1.4e-82 310.5 302 61.9
CiPaw.07G139200 Carya illinoinensis HOM05D006068 ORTHO05D007579 3.1e-82 309.3 310 60.0
Gohir.D01G092800 Gossypium hirsutum HOM05D006068 ORTHO05D007579 5.3e-82 308.5 308 61.0
Gorai.002G118100 Gossypium raimondii HOM05D006068 ORTHO05D007579 6.9e-82 308.1 308 61.0
Sc02g0009080 Simmondsia chinensis HOM05D006068 ORTHO05D007579 3.4e-81 305.8 292 62.0
Actinidia17036 Actinidia chinensis HOM05D006068 ORTHO05D007579 4.5e-81 305.4 305 60.3
Gohir.A01G106300 Gossypium hirsutum HOM05D006068 ORTHO05D007579 1.7e-80 303.5 308 60.1
FAN15G0111 Fragaria x ananassa HOM05D006068 ORTHO05D007579 2.2e-80 303.1 306 60.8
Potri.005G250000 Populus trichocarpa HOM05D006068 ORTHO05D007579 2.2e-80 303.1 313 59.7
Ciclev10001788m.g Citrus clementina HOM05D006068 ORTHO05D007579 3.8e-80 302.4 305 58.7
Manes.18G005700 Manihot esculenta HOM05D006068 ORTHO05D007579 5.0e-80 302.0 307 59.3
FAN27G1916 Fragaria x ananassa HOM05D006068 ORTHO05D007579 6.5e-80 301.6 306 60.8
CSS0004824 Camellia sinensis var. sinensis HOM05D006068 ORTHO05D007579 8.5e-80 301.2 301 61.1
Duzib116G0068 Durio zibethinus HOM05D006068 ORTHO05D007579 8.5e-80 301.2 307 59.0
Glyma.04G018200 Glycine max HOM05D006068 ORTHO05D007579 8.5e-80 301.2 313 57.5
CANSAT25G0130 Cannabis sativa HOM05D006068 ORTHO05D007579 1.4e-79 300.4 304 59.9
CAN.G311.112 Capsicum annuum HOM05D006068 ORTHO05D007579 1.4e-79 300.4 302 58.3
Cpa.g.sc26.203 Carica papaya HOM05D006068 ORTHO05D007579 1.4e-79 300.4 275 62.9
TWI36G0647 Tripterygium wilfordii HOM05D006068 ORTHO05D007579 1.4e-79 300.4 298 59.4
GSVIVG01008675001 Vitis vinifera HOM05D006068 ORTHO05D007579 1.4e-79 300.4 307 61.9
Ca_15436_v3 Cicer arietinum L. HOM05D006068 ORTHO05D007579 1.9e-79 300.1 282 59.9
Rhsim06G0007800 Rhododendron simsii HOM05D006068 ORTHO05D007579 3.2e-79 299.3 308 57.8
Hma1.2p1_0507F.1_g168430 Hydrangea macrophylla HOM05D006068 ORTHO05D007579 4.2e-79 298.9 309 59.5
Sabra05G0193600 Salix brachista HOM05D006068 ORTHO05D007579 5.5e-79 298.5 313 59.7
Phvul.009G010500 Phaseolus vulgaris HOM05D006068 ORTHO05D007579 7.2e-79 298.1 282 60.6
Migut.C00957 Erythranthe guttata HOM05D006068 ORTHO05D007579 1.2e-78 297.4 230 70.0
RcHm_v2.0_Chr6g0304221 Rosa chinensis HOM05D006068 ORTHO05D007579 1.2e-78 297.4 305 59.3
SalBow7G3932 Salvia bowleyana HOM05D006068 ORTHO05D007579 1.2e-78 297.4 230 70.0
Aqoxy6G01735 Aquilegia oxysepala HOM05D006068 ORTHO05D007579 2.1e-78 296.6 304 59.9
VMungo1309G0800 Vigna mungo HOM05D006068 ORTHO05D007579 2.7e-78 296.2 282 60.6
Cfa014066 Carpinus fangiana HOM05D006068 ORTHO05D007579 3.6e-78 295.8 311 60.8
TAR625G0587 Trochodendron aralioides HOM05D006068 ORTHO05D007579 3.6e-78 295.8 274 62.4
Sed0006319 Sechium edule HOM05D006068 ORTHO05D007579 6.1e-78 295.0 305 59.3
vmacro21821 Vaccinium macrocarpon HOM05D006068 ORTHO05D007579 7.9e-78 294.7 305 58.4
Lj1g0017550 Lotus japonicus HOM05D006068 ORTHO05D007579 1.0e-77 294.3 282 58.9
MSTRG.1108 Avicennia marina HOM05D006068 ORTHO05D007579 1.8e-77 293.5 311 58.5
Solyc04g082310.3 Solanum lycopersicum HOM05D006068 ORTHO05D007579 2.3e-77 293.1 303 57.8
Sopen04g035930 Solanum pennellii HOM05D006068 ORTHO05D007579 2.3e-77 293.1 303 57.8
PGR031G3964 Punica granatum HOM05D006068 ORTHO05D007579 3.0e-77 292.7 313 58.8
Nitab4.5_0000588g0170 Nicotiana tabacum HOM05D006068 ORTHO05D007579 3.9e-77 292.4 303 58.7
CSS0019755 Camellia sinensis var. sinensis HOM05D006068 ORTHO05D007579 5.1e-77 292.0 302 58.6
unitig_82.g27117 Utricularia gibba HOM05D006068 ORTHO05D007579 6.7e-77 291.6 301 56.8
Prupe.1G354700 Prunus persica HOM05D006068 ORTHO05D007579 1.1e-76 290.8 312 57.4
MELO3C026542.2 Cucumis melo HOM05D006068 ORTHO05D007579 3.3e-76 289.3 305 57.7
Medtr3g115240 Medicago truncatula HOM05D006068 ORTHO05D007579 3.3e-76 289.3 313 55.9
Oeu056207.1 Olea europaea HOM05D006068 ORTHO05D007579 3.3e-76 289.3 221 71.0
Sabra02G0008300 Salix brachista HOM05D006068 ORTHO05D007579 3.3e-76 289.3 299 59.2
Psat5g011440 Pisum sativum HOM05D006068 ORTHO05D007579 4.4e-76 288.9 276 60.1
ATR0661G354 Amborella trichopoda HOM05D006068 ORTHO05D007579 5.7e-76 288.5 281 59.8
Potri.002G011000 Populus trichocarpa HOM05D006068 ORTHO05D007579 5.7e-76 288.5 278 61.2
CsaV3_6G031610 Cucumis sativus L. HOM05D006068 ORTHO05D007579 1.3e-75 287.3 305 57.0
arahy.Tifrunner.gnm1.ann1.N0WG06 Arachis hypogaea HOM05D006068 ORTHO05D007579 1.7e-75 287.0 284 60.2
Os02g0833400 Oryza sativa ssp. japonica HOM05D006068 ORTHO05D007579 2.8e-75 286.2 260 60.4
arahy.Tifrunner.gnm1.ann1.M33Y2K Arachis hypogaea HOM05D006068 ORTHO05D007579 3.7e-75 285.8 284 60.2
FAN20G0518 Fragaria x ananassa HOM05D006068 ORTHO05D007579 3.7e-75 285.8 339 53.7
TWI56G1411 Tripterygium wilfordii HOM05D006068 ORTHO05D007579 4.8e-75 285.4 273 58.2
Glyma.06G018500 Glycine max HOM05D006068 ORTHO05D007579 6.3e-75 285.0 312 55.4
TAR381G1212 Trochodendron aralioides HOM05D006068 ORTHO05D007579 6.3e-75 285.0 284 60.9
Nn5g30933 Nelumbo nucifera HOM05D006068 ORTHO05D007579 1.1e-74 284.3 222 69.8
PSO675G2053 Papaver somniferum HOM05D006068 ORTHO05D007579 1.4e-74 283.9 284 59.2
RcHm_v2.0_Chr5g0060651 Rosa chinensis HOM05D006068 ORTHO05D007579 2.4e-74 283.1 316 56.0
THA.LOC104806922 Tarenaya hassleriana HOM05D006068 ORTHO05D007579 2.4e-74 283.1 315 58.1
Cc10_g00700 Coffea canephora HOM05D006068 ORTHO05D007579 3.1e-74 282.7 312 56.1
QL02p014005 Quercus lobata HOM05D006068 ORTHO05D007579 3.1e-74 282.7 356 50.8
TPR.G38132 Trifolium pratense HOM05D006068 ORTHO05D007579 3.1e-74 282.7 316 53.8
Lalb_Chr08g0246381 Lupinus albus HOM05D006068 ORTHO05D007579 5.3e-74 282.0 304 56.2
PGSC0003DMG400009901 Solanum tuberosum HOM05D006068 ORTHO05D007579 5.3e-74 282.0 229 66.8
Haze_22761 Corylus avellana HOM05D006068 ORTHO05D007579 1.2e-73 280.8 306 59.8
PSO541G0168 Papaver somniferum HOM05D006068 ORTHO05D007579 2.0e-73 280.0 303 56.4
BcaC03g16456 Brassica carinata HOM05D006068 ORTHO05D007579 2.6e-73 279.6 311 57.6
Peaxi162Scf00893g00430 Petunia axillaris HOM05D006068 ORTHO05D007579 2.6e-73 279.6 302 55.6
Atru.chr13.130 Acer truncatum HOM05D006068 ORTHO05D007579 4.5e-73 278.9 227 68.3
ECA238G2626 Erigeron canadensis HOM05D006068 ORTHO05D007579 4.5e-73 278.9 230 68.3
Eucgr.F03551 Eucalyptus grandis HOM05D006068 ORTHO05D007579 4.5e-73 278.9 262 63.0
Sp7g08270 Schrenkiella parvula HOM05D006068 ORTHO05D007579 1.3e-72 277.3 309 57.3
SGA_v2.0_scaffold108G30857 Striga asiatica HOM05D006068 ORTHO05D007579 2.2e-72 276.6 297 55.9
CARHR047740 Cardamine hirsuta HOM05D006068 ORTHO05D007579 2.9e-72 276.2 316 55.7
Ca_15461_v3 Cicer arietinum L. HOM05D006068 ORTHO05D007579 2.9e-72 276.2 221 67.4
DCAR_023009 Daucus carota HOM05D006068 ORTHO05D007579 2.9e-72 276.2 227 68.3
MD08G1002600 Malus domestica HOM05D006068 ORTHO05D007579 2.9e-72 276.2 277 58.5
Lj4A11G71 Lonicera japonica HOM05D006068 ORTHO05D007579 5.0e-72 275.4 219 68.5
HanXRQChr14g0428291 Helianthus annuus HOM05D006068 ORTHO05D007579 8.5e-72 274.6 311 56.9
Carub.0002s0126 Capsella rubella HOM05D006068 ORTHO05D007579 2.5e-71 273.1 309 56.6
FvH4_2g37520 Fragaria vesca HOM05D006068 ORTHO05D007579 4.2e-71 272.3 283 59.4
A02p27010 Brassica napus HOM05D006068 ORTHO05D007579 5.5e-71 271.9 322 55.9
BraA02t07716Z Brassica rapa HOM05D006068 ORTHO05D007579 5.5e-71 271.9 322 55.9
Lalb_Chr19g0131741 Lupinus albus HOM05D006068 ORTHO05D007579 5.5e-71 271.9 226 65.9
HPP92_025539 Vanilla planifolia HOM05D006068 ORTHO05D007579 5.5e-71 271.9 227 65.6
AL2G11620 Arabidopsis lyrata HOM05D006068 ORTHO05D007579 7.2e-71 271.6 312 54.8
AT1G63610 Arabidopsis thaliana HOM05D006068 ORTHO05D007579 9.4e-71 271.2 276 59.4
C02p42740 Brassica napus HOM05D006068 ORTHO05D007579 9.4e-71 271.2 322 55.6
CDE07G1082 Ceratophyllum demersum HOM05D006068 ORTHO05D007579 9.4e-71 271.2 230 63.5
SGA_v2.0_scaffold275G46600 Striga asiatica HOM05D006068 ORTHO05D007579 9.4e-71 271.2 347 51.0
Zm00001eb190500 Zea mays HOM05D006068 ORTHO05D007579 9.4e-71 271.2 219 67.6
BolC2t10310H Brassica oleracea HOM05D006068 ORTHO05D007579 1.2e-70 270.8 322 55.6
HPP92_025498 Vanilla planifolia HOM05D006068 ORTHO05D007579 1.2e-70 270.8 227 64.8
BcaC06g31004 Brassica carinata HOM05D006068 ORTHO05D007579 2.7e-70 269.6 312 57.1
Lsat_1_v5_gn_2_6520 Lactuca sativa HOM05D006068 ORTHO05D007579 2.3e-69 266.5 316 54.7
CDE06G2200 Ceratophyllum demersum HOM05D006068 ORTHO05D007579 9.7e-68 261.2 290 54.5
Lj6A22T18 Lonicera japonica HOM05D006068 ORTHO05D007579 1.7e-67 260.4 190 71.6
COL.COLO4_04004 Corchorus olitorius HOM05D006068 ORTHO05D007579 3.1e-66 256.1 259 60.2
MD15G1002300 Malus domestica HOM05D006068 ORTHO05D007579 1.1e-63 247.7 289 53.6
ClCG08G009470 Citrullus lanatus HOM05D006068 ORTHO05D007579 7.2e-63 245.0 259 58.3
SHI07998 Sapria himalayana HOM05D006068 ORTHO05D007579 2.0e-60 236.9 229 57.2
Lj6A2T21 Lonicera japonica HOM05D006068 ORTHO05D007579 1.3e-59 234.2 241 56.0
Aa31LG9G12420 Aethionema arabicum HOM05D006068 ORTHO05D007579 6.3e-59 231.9 311 51.8
RcHm_v2.0_Chr6g0270451 Rosa chinensis HOM05D006068 ORTHO05D007579 7.0e-58 228.4 158 75.9
vmacro21818 Vaccinium macrocarpon HOM05D006068 ORTHO05D007579 1.1e-55 221.1 198 64.1
Mapoly0020s0031 Marchantia polymorpha HOM05D006068 ORTHO05D007579 5.5e-55 218.8 255 52.5
AagrBONN_evm.TU.Sc2ySwM_344.4662 Anthoceros agrestis HOM05D006068 ORTHO05D007579 1.2e-52 211.1 219 55.7
Dinv31935 Davidia involucrata HOM05D006068 ORTHO05D007579 2.0e-52 210.3 306 47.7
SMO139G0129 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 1.4e-50 204.1 227 49.3
Pp3c11_22560 Physcomitrium patens HOM05D006068 ORTHO05D007579 7.0e-50 201.8 223 52.9
Pp3c7_4160 Physcomitrium patens HOM05D006068 ORTHO05D007579 5.9e-49 198.7 226 52.2
Pp3c7_4165 Physcomitrium patens HOM05D006068 ORTHO05D007579 5.9e-49 198.7 226 52.2
CBR_g12699 Chara braunii HOM05D006068 ORTHO05D007579 1.0e-48 198.0 274 46.4
AagrBONN_evm.TU.Sc2ySwM_117.403 Anthoceros agrestis HOM05D006068 ORTHO05D007579 1.1e-42 177.9 148 62.8
SMO157G0009 Selaginella moellendorffii HOM05D006068 ORTHO05D007579 2.8e-30 136.7 198 38.9
SEGI_18480 Sequoiadendron giganteum HOM05D006068 ORTHO05D007579 1.9e-26 124.0 168 46.4
TPR.G39477 Trifolium pratense HOM05D006068 ORTHO05D007579 3.5e-25 119.8 74 77.0
PRCOL_00003973 Prasinoderma coloniale HOM05D006068 ORTHO05D007579 8.9e-21 105.1 202 38.1
Zm00001eb388570 Zea mays HOM05D000737 ORTHO05D000581 1.5e-12 77.8 116 45.7
Aa31LG8G12970 Aethionema arabicum HOM05D002926 ORTHO05D003338 6.6e-08 62.4 291 25.4
Ah.01g018410 Amaranthus hybridus HOM05D002926 ORTHO05D003338 5.6e-07 59.3 263 24.3
Cre01.g015400 Chlamydomonas reinhardtii HOM05D006068 ORTHO05D007579 7.3e-07 58.9 94 41.5
AagrBONN_evm.TU.Sc2ySwM_344.2892 Anthoceros agrestis HOM05D002926 ORTHO05D003338 9.6e-07 58.5 268 22.8
Carub.0003s2892 Capsella rubella HOM05D002926 ORTHO05D003338 6.2e-06 55.8 294 23.5


User provided reference genes

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