Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.1e-130 468.0 228 100.0
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.1e-101 372.1 217 88.0
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.9e-99 364.8 236 80.9
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.4e-99 364.0 236 80.5
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.5e-82 309.3 238 68.9
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 2.1e-81 306.2 236 68.6
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.0e-75 287.3 232 65.1
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 1.1e-74 283.9 233 63.9
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 5.5e-74 281.6 233 63.1
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 9.4e-74 280.8 232 63.8
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.2e-73 280.4 232 63.8
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.7e-73 279.3 232 63.4
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 6.1e-73 278.1 232 62.5
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 3.0e-72 275.8 248 60.5
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 5.1e-72 275.0 234 60.7
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 8.8e-72 274.2 235 61.3
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 1.1e-71 273.9 234 60.7
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.0e-71 273.1 232 62.1
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 3.3e-71 272.3 227 63.4
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.3e-71 272.3 232 60.8
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.3e-71 271.9 232 60.8
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.7e-71 271.6 232 60.8
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 2.2e-70 269.6 232 60.8
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 3.7e-70 268.9 235 62.1
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 4.8e-70 268.5 232 61.2
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 6.3e-70 268.1 232 60.3
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 6.3e-70 268.1 233 60.5
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 1.1e-69 267.3 229 60.3
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.1e-69 267.3 234 60.3
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.8e-69 266.5 231 60.6
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.4e-69 266.2 230 60.0
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 5.3e-69 265.0 235 61.7
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 6.9e-69 264.6 233 59.2
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 9.1e-69 264.2 233 60.5
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 9.1e-69 264.2 233 60.9
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.2e-68 263.8 230 60.4
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.2e-68 263.8 233 60.9
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.5e-68 263.5 233 58.8
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.5e-68 263.5 231 59.3
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.5e-68 263.5 230 63.0
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 2.0e-68 263.1 229 62.0
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 3.4e-68 262.3 241 58.1
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 4.5e-68 261.9 237 60.3
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 4.5e-68 261.9 228 59.6
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 7.7e-68 261.2 233 59.2
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 7.7e-68 261.2 237 58.2
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 7.7e-68 261.2 229 61.6
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 7.7e-68 261.2 234 59.0
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 1.0e-67 260.8 232 59.9
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 1.3e-67 260.4 237 58.2
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 1.7e-67 260.0 231 59.7
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.7e-67 260.0 238 58.4
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 5.0e-67 258.5 234 56.8
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 5.0e-67 258.5 243 58.4
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 5.0e-67 258.5 233 57.9
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 8.5e-67 257.7 240 58.3
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 3.2e-66 255.8 226 59.3
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 5.5e-66 255.0 230 60.0
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 1.2e-65 253.8 246 59.3
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 2.1e-65 253.1 243 58.8
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.1e-65 253.1 232 59.1
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 2.7e-65 252.7 240 57.9
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 3.6e-65 252.3 259 54.4
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 4.7e-65 251.9 238 58.4
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 7.9e-65 251.1 233 57.9
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.0e-64 250.8 233 57.5
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 1.0e-64 250.8 232 56.5
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.4e-64 250.4 228 59.2
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 3.0e-64 249.2 239 58.2
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 3.9e-64 248.8 236 56.8
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 5.1e-64 248.4 234 57.3
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.8e-64 247.7 232 56.5
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.1e-63 247.3 232 55.6
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 1.1e-63 247.3 233 57.5
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.1e-63 247.3 224 58.0
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.5e-63 246.9 232 55.6
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.5e-63 246.9 232 55.6
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.5e-63 246.9 232 55.6
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 2.6e-63 246.1 238 57.1
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 3.3e-63 245.7 243 56.8
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.3e-63 245.7 232 56.0
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 4.4e-63 245.4 233 57.1
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 7.4e-63 244.6 227 57.7
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 9.7e-63 244.2 236 56.4
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.3e-62 243.8 240 55.8
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.3e-62 243.8 232 55.6
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.7e-62 243.4 226 56.2
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 2.2e-62 243.0 242 56.2
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 3.7e-62 242.3 241 55.6
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.8e-62 241.9 243 55.6
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 8.2e-62 241.1 230 55.2
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 8.2e-62 241.1 235 56.6
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.4e-61 240.4 243 55.6
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 3.1e-61 239.2 232 54.7
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 5.3e-61 238.4 233 54.9
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 5.3e-61 238.4 232 55.2
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 7.0e-61 238.0 231 54.1
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 2.6e-60 236.1 231 53.7
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 2.6e-60 236.1 231 53.7
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.6e-60 236.1 230 54.3
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 5.9e-60 235.0 230 54.3
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 5.9e-60 235.0 236 53.8
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 7.7e-60 234.6 229 54.1
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.0e-59 234.2 236 53.0
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 1.0e-59 234.2 234 55.1
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 1.3e-59 233.8 244 53.3
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.7e-59 233.4 231 54.5
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 2.2e-59 233.0 230 55.2
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.2e-59 233.0 231 54.5
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 2.9e-59 232.6 228 53.9
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 5.0e-59 231.9 248 54.0
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.9e-58 229.9 224 55.4
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 1.9e-58 229.9 237 54.0
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 5.5e-58 228.4 195 59.5
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 1.2e-57 227.3 228 53.9
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.2e-57 227.3 216 56.5
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 1.2e-57 227.3 298 45.6
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.6e-57 226.9 231 51.5
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 6.1e-57 224.9 229 52.0
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.0e-56 224.2 228 53.5
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 2.3e-56 223.0 240 52.1
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 3.9e-56 222.2 228 53.1
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 5.2e-56 221.9 230 51.3
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 5.2e-56 221.9 234 50.9
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.1e-55 220.7 232 54.7
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.1e-55 220.7 130 80.0
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 5.7e-55 218.4 306 43.5
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.7e-54 215.7 210 55.7
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 4.8e-54 215.3 228 52.6
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 4.8e-54 215.3 222 54.1
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.1e-53 214.2 232 52.6
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 1.4e-53 213.8 228 51.3
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 2.4e-53 213.0 228 50.9
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 2.4e-53 213.0 228 50.9
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 2.4e-53 213.0 228 50.9
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 3.1e-53 212.6 234 52.1
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.3e-51 207.2 130 74.6
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 5.0e-51 205.3 190 56.8
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 5.0e-51 205.3 123 77.2
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.9e-50 203.4 185 59.5
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 3.2e-50 202.6 243 47.3
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.2e-48 195.3 127 73.2
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.2e-46 189.9 127 70.9
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 2.4e-45 186.4 227 47.1
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.0e-43 181.0 106 77.4
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 5.0e-43 178.7 293 38.6
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.1e-42 177.6 128 64.8
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 3.0e-40 169.5 227 45.4
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 2.4e-37 159.8 102 73.5
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.1e-37 159.5 243 39.5
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 2.0e-36 156.8 272 37.5
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.4e-29 134.0 261 36.8
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.8e-29 133.7 127 48.0
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.0e-24 117.9 95 58.9
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 7.5e-23 111.7 91 53.8
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 6.2e-17 92.0 127 48.0
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 6.2e-17 92.0 96 42.7
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 1.5e-15 87.4 90 43.3
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 2.6e-15 86.7 65 63.1
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 3.7e-14 82.8 84 53.6
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.6e-12 75.9 128 39.8
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.1e-10 71.2 81 46.9
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 1.2e-07 61.2 135 32.6


User provided reference genes

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