Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.7e-131 470.7 238 100.0
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.8e-129 464.5 236 99.2
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.7e-115 417.2 236 91.1
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 2.7e-108 395.6 236 85.2
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.5e-98 363.2 236 80.5
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 8.5e-94 347.4 237 75.9
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 2.5e-93 345.9 237 74.3
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 5.5e-93 344.7 237 74.3
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 9.4e-93 344.0 236 74.6
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.7e-92 342.4 238 75.6
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.6e-92 342.0 238 75.6
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.0e-92 340.9 238 75.2
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 2.3e-91 339.3 238 73.5
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 8.8e-91 337.4 236 74.6
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 2.0e-90 336.3 237 73.0
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 2.6e-90 335.9 236 72.0
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 5.7e-90 334.7 236 71.6
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 7.4e-90 334.3 236 72.0
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 7.4e-90 334.3 254 70.1
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 1.7e-89 333.2 236 72.5
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 6.3e-89 331.3 236 71.6
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 8.2e-89 330.9 232 73.7
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.4e-88 330.1 236 71.2
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 3.1e-88 328.9 237 71.7
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.1e-88 328.9 232 73.3
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 3.1e-88 328.9 236 72.0
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.1e-88 328.9 237 70.5
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 3.1e-88 328.9 238 73.1
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.1e-88 328.9 236 70.8
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.1e-88 328.6 237 70.5
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 4.1e-88 328.6 236 72.0
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.3e-88 328.2 237 70.5
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 7.0e-88 327.8 236 72.0
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 9.1e-88 327.4 237 70.0
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 9.1e-88 327.4 236 72.0
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.6e-87 326.6 246 69.9
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.6e-87 326.6 238 72.3
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.6e-87 326.6 236 71.2
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 2.0e-87 326.2 236 71.2
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 2.0e-87 326.2 237 70.0
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.0e-87 326.2 241 72.6
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 2.6e-87 325.9 237 71.3
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 2.6e-87 325.9 237 72.6
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 3.5e-87 325.5 240 71.7
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 3.5e-87 325.5 242 70.2
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.0e-86 323.9 236 70.8
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 1.3e-86 323.6 235 71.1
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 2.2e-86 322.8 235 70.6
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 2.2e-86 322.8 236 70.8
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 2.9e-86 322.4 237 70.9
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 6.5e-86 321.2 236 68.2
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 1.5e-85 320.1 246 69.1
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.9e-85 319.7 244 69.3
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 2.5e-85 319.3 237 70.5
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 4.2e-85 318.5 235 70.6
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 5.5e-85 318.2 237 70.5
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 9.4e-85 317.4 233 69.5
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 1.2e-84 317.0 237 69.2
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.1e-84 316.2 240 67.5
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 2.1e-84 316.2 233 69.1
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 2.7e-84 315.8 238 69.7
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 4.7e-84 315.1 239 69.9
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 8.0e-84 314.3 241 69.7
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 8.0e-84 314.3 238 68.5
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 1.0e-83 313.9 233 69.5
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.4e-83 313.5 233 68.7
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 1.8e-83 313.2 245 68.2
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.8e-83 313.2 236 69.9
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 2.3e-83 312.8 236 70.3
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 6.7e-83 311.2 236 67.4
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.8e-83 310.8 236 67.8
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 8.8e-83 310.8 237 69.6
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.5e-82 310.1 233 69.1
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.0e-82 309.7 236 68.2
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.3e-82 308.9 236 67.4
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 4.4e-82 308.5 242 67.4
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 5.7e-82 308.1 236 66.9
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.5e-82 307.8 236 66.9
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.5e-82 307.8 236 66.9
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.5e-82 307.8 236 66.9
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 9.7e-82 307.4 233 68.2
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.3e-81 307.0 236 66.9
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 2.8e-81 305.8 247 68.8
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 4.8e-81 305.1 244 68.4
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.1e-80 303.9 243 65.8
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 3.1e-80 302.4 238 68.1
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 7.0e-80 301.2 232 67.2
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 2.7e-79 299.3 248 65.7
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 4.5e-79 298.5 238 65.1
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.5e-79 298.5 234 65.4
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 5.9e-79 298.1 240 65.4
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 1.0e-78 297.4 237 65.4
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.0e-78 297.4 232 65.5
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 1.3e-78 297.0 232 66.4
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.7e-78 296.6 235 64.7
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 6.5e-78 294.7 198 73.2
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.5e-77 293.5 236 64.0
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 2.5e-77 292.7 235 63.4
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 4.2e-77 292.0 237 64.6
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 4.2e-77 292.0 238 63.4
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 9.4e-77 290.8 302 55.3
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.2e-76 290.4 234 62.0
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.6e-76 290.0 252 64.3
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 2.1e-76 289.7 234 62.0
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.1e-76 289.7 220 66.8
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 2.7e-76 289.3 239 63.2
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 3.6e-76 288.9 236 63.6
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 3.6e-76 288.9 234 61.5
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 4.7e-76 288.5 239 61.1
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 6.1e-76 288.1 223 66.8
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 8.0e-76 287.7 236 63.1
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 8.0e-76 287.7 235 63.4
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 8.0e-76 287.7 241 63.5
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 1.4e-75 287.0 241 64.3
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 2.3e-75 286.2 234 67.1
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 3.0e-75 285.8 236 63.1
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 3.4e-74 282.3 235 60.4
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 4.4e-74 282.0 234 61.5
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.7e-73 280.0 200 70.5
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.7e-73 278.9 198 77.8
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 8.3e-73 277.7 235 60.9
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 8.3e-73 277.7 239 60.3
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 8.3e-73 277.7 310 51.9
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 1.4e-72 276.9 243 61.3
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 1.8e-72 276.6 236 61.4
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 9.1e-72 274.2 235 61.3
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 4.5e-71 271.9 234 60.7
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 7.7e-71 271.2 234 63.2
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.7e-70 270.0 192 69.8
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 4.7e-68 261.9 234 59.0
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 4.7e-68 261.9 234 59.0
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 4.7e-68 261.9 234 59.0
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 1.4e-67 260.4 240 61.2
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 1.4e-67 260.4 234 59.0
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 8.9e-67 257.7 244 57.0
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.2e-66 257.3 235 59.6
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 4.1e-64 248.8 239 59.4
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 1.7e-62 243.4 297 48.1
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 9.8e-58 227.6 133 80.5
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.3e-57 227.3 159 70.4
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.9e-57 225.3 219 57.1
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 1.4e-56 223.8 235 51.5
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.6e-55 220.3 159 68.6
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.9e-53 213.4 237 48.9
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 5.6e-53 211.8 129 76.7
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 1.6e-52 210.3 122 79.5
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 5.2e-51 205.3 237 51.1
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.2e-47 194.1 247 44.9
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 4.3e-45 185.7 105 80.0
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 7.3e-45 184.9 266 42.1
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.0e-38 164.5 101 76.2
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.1e-35 154.5 278 38.8
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.8e-35 153.7 270 38.9
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 6.4e-33 145.2 134 62.7
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.3e-29 132.9 132 56.8
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.6e-26 123.2 99 60.6
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 8.4e-25 118.2 101 65.3
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 7.1e-24 115.2 91 54.9
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 1.4e-19 100.9 79 69.6
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 5.8e-18 95.5 79 65.8
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 5.8e-18 95.5 93 55.9
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.7e-17 94.0 121 52.1
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 2.2e-17 93.6 96 43.8
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 8.4e-17 91.7 90 45.6
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 7.1e-16 88.6 54 74.1
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 4.8e-12 75.9 79 51.9
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.4e-11 74.3 135 42.2
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.4e-11 73.6 81 48.1
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.0e-09 68.2 96 50.0
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 8.4e-09 65.1 148 31.1


User provided reference genes

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