Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.2e-153 545.0 274 100.0
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.6e-128 463.0 236 99.2
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.2e-115 420.2 254 86.6
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 4.5e-107 391.7 236 84.7
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.3e-98 362.8 236 80.9
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 9.8e-94 347.4 237 75.9
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 2.4e-92 342.8 236 74.6
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.1e-92 342.4 244 73.4
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 4.1e-92 342.0 237 75.1
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 9.2e-92 340.9 237 73.8
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.2e-91 340.5 237 74.7
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 2.0e-91 339.7 237 73.8
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 2.0e-91 339.7 238 73.5
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 2.9e-90 335.9 237 73.0
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 6.6e-90 334.7 254 70.1
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 2.5e-89 332.8 236 74.2
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 9.5e-89 330.9 236 71.6
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 2.1e-88 329.7 236 71.6
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 2.1e-88 329.7 236 71.2
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.8e-88 329.3 237 70.5
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.6e-88 328.9 237 70.5
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.7e-88 328.6 237 70.5
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 4.7e-88 328.6 236 72.0
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 6.1e-88 328.2 237 71.7
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 1.0e-87 327.4 236 72.0
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.0e-87 327.4 247 71.7
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.0e-87 327.4 247 68.4
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.4e-87 327.0 232 73.7
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.8e-87 326.6 236 72.0
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 1.8e-87 326.6 236 71.2
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.3e-87 326.2 247 68.8
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.0e-87 325.5 236 70.8
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 4.0e-87 325.5 238 72.3
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 5.2e-87 325.1 232 73.3
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 5.2e-87 325.1 236 71.2
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 6.8e-87 324.7 237 71.7
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 8.9e-87 324.3 253 68.4
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.2e-86 323.9 237 71.3
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.2e-86 323.9 237 70.0
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.0e-86 323.2 236 71.6
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 2.6e-86 322.8 237 70.9
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 2.6e-86 322.8 246 69.1
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.6e-86 322.8 236 71.6
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 3.4e-86 322.4 237 69.6
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 3.4e-86 322.4 236 70.8
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 4.4e-86 322.0 235 71.1
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 4.4e-86 322.0 243 69.5
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 5.7e-86 321.6 241 72.2
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 7.5e-86 321.2 235 70.6
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 2.2e-85 319.7 240 70.8
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.9e-85 319.3 255 67.5
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 3.7e-85 318.9 236 68.2
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 2.4e-84 316.2 237 70.0
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 2.4e-84 316.2 246 68.7
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 5.4e-84 315.1 237 70.0
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 9.2e-84 314.3 240 67.5
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 1.2e-83 313.9 235 70.2
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 1.6e-83 313.5 238 69.7
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 2.0e-83 313.2 241 68.9
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.0e-83 313.2 234 69.7
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 3.5e-83 312.4 250 66.8
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 3.5e-83 312.4 237 68.8
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 3.5e-83 312.4 241 69.7
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 4.6e-83 312.0 236 70.3
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 5.9e-83 311.6 233 68.7
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 1.3e-82 310.5 236 69.5
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 1.7e-82 310.1 240 67.9
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.7e-82 310.1 247 66.0
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 1.7e-82 310.1 247 65.6
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.3e-82 309.7 238 68.1
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.3e-82 309.7 240 67.1
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 3.9e-82 308.9 233 68.2
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 6.6e-82 308.1 247 65.6
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.1e-81 307.4 247 65.2
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.5e-81 307.0 247 65.2
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.5e-81 307.0 247 65.2
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.5e-81 307.0 247 65.2
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.9e-81 306.6 241 68.0
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.5e-81 306.2 247 65.2
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 3.3e-81 305.8 237 69.2
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 7.3e-81 304.7 247 68.8
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 1.2e-80 303.9 244 68.4
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.2e-80 303.9 241 67.2
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 1.6e-80 303.5 242 66.9
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 2.8e-80 302.8 245 66.5
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 8.0e-80 301.2 246 67.1
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.1e-79 299.3 244 63.9
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 5.2e-79 298.5 250 63.6
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 1.2e-78 297.4 251 63.7
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 1.2e-78 297.4 232 65.5
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 2.6e-78 296.2 232 66.8
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 4.4e-78 295.4 237 65.4
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 7.5e-78 294.7 252 63.9
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 2.9e-77 292.7 248 61.7
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 3.7e-77 292.4 232 66.8
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 4.9e-77 292.0 236 64.0
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 8.3e-77 291.2 237 64.6
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 1.1e-76 290.8 235 63.4
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 1.9e-76 290.0 198 72.7
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.9e-76 290.0 238 63.4
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 3.2e-76 289.3 313 54.3
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 5.4e-76 288.5 234 62.0
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 7.0e-76 288.1 239 63.2
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 9.2e-76 287.7 234 62.0
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 9.2e-76 287.7 252 64.3
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.2e-75 287.3 236 63.6
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 1.6e-75 287.0 234 61.5
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 2.0e-75 286.6 239 61.1
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 2.7e-75 286.2 236 63.1
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.7e-75 286.2 235 63.4
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.5e-75 285.8 241 63.5
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.6e-75 285.4 221 67.0
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 6.0e-75 285.0 223 66.4
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.0e-74 284.3 236 63.1
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 3.9e-74 282.3 245 64.1
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 5.0e-74 282.0 241 63.9
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.1e-73 280.8 198 78.3
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.5e-73 280.4 235 60.4
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 4.3e-73 278.9 234 61.1
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.2e-72 277.3 321 51.1
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.1e-72 276.6 208 69.2
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 2.8e-72 276.2 236 61.4
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 6.2e-72 275.0 243 61.3
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 8.1e-72 274.6 235 60.4
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 8.1e-72 274.6 239 59.8
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 4.0e-71 272.3 235 61.3
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.6e-70 269.6 234 60.7
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.7e-69 266.9 243 61.3
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.7e-69 265.8 193 69.9
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 7.1e-68 261.5 234 59.0
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 7.1e-68 261.5 234 59.0
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 7.1e-68 261.5 234 59.0
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 2.1e-67 260.0 234 59.0
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 6.0e-67 258.5 240 61.2
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 5.1e-66 255.4 235 59.6
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 5.1e-66 255.4 244 57.0
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.4e-63 247.3 238 59.7
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 9.9e-62 241.1 297 48.1
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.5e-57 227.3 159 70.4
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.5e-57 226.5 133 80.5
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 5.6e-57 225.3 219 57.1
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.8e-55 220.3 159 68.6
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 4.0e-55 219.2 235 51.1
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.4e-52 210.7 129 76.7
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 4.2e-52 209.1 122 79.5
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 5.4e-52 208.8 237 48.5
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 1.5e-49 200.7 237 50.6
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.4e-47 193.4 247 44.5
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 4.9e-45 185.7 281 40.9
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 6.4e-45 185.3 132 68.9
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 2.6e-38 163.3 101 76.2
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 3.5e-35 152.9 278 38.8
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 6.0e-35 152.1 270 38.9
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 4.3e-33 146.0 134 62.7
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 4.2e-28 129.4 132 56.1
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.1e-25 121.3 95 61.1
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 1.3e-24 117.9 101 65.3
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.4e-23 114.4 91 54.9
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 2.1e-19 100.5 79 69.6
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 8.8e-18 95.1 79 65.8
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 8.8e-18 95.1 93 55.9
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 8.8e-18 95.1 121 38.8
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.1e-17 94.7 121 52.1
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 9.7e-17 91.7 90 45.6
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.1e-15 88.2 61 68.9
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.4e-12 77.8 79 53.2
Ah.11g040950 Amaranthus hybridus HOM05D004155 ORTHO05D061987 3.2e-12 76.6 35 97.1
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.2e-11 74.7 135 42.2
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.7e-11 73.6 81 48.1
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 1.3e-08 64.7 153 30.1
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.7e-08 64.3 96 49.0


User provided reference genes

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