Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.9e-134 481.9 237 100.0
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.3e-81 304.7 238 68.9
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.3e-75 286.2 179 84.9
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 9.7e-74 280.8 198 78.3
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.3e-73 278.1 198 77.8
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 3.6e-60 235.7 195 68.2
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 1.4e-56 223.8 195 63.6
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 1.5e-50 203.8 193 60.1
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 1.5e-50 203.8 194 58.8
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 2.6e-50 203.0 194 59.8
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 3.4e-50 202.6 193 58.5
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 4.4e-50 202.2 193 60.6
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 9.8e-50 201.1 194 59.3
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 2.2e-49 199.9 191 58.1
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.8e-49 199.5 194 58.8
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.8e-49 199.5 194 58.8
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 3.7e-49 199.1 195 57.9
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 4.9e-49 198.7 192 56.8
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 8.3e-49 198.0 188 58.0
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 1.4e-48 197.2 193 56.5
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 2.4e-48 196.4 211 55.9
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 2.4e-48 196.4 189 58.7
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.4e-48 195.3 194 55.7
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 5.4e-48 195.3 195 56.9
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 7.0e-48 194.9 193 57.5
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 7.0e-48 194.9 194 55.7
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 7.0e-48 194.9 200 57.5
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 9.2e-48 194.5 194 55.7
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.6e-47 193.7 204 55.4
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.0e-47 193.4 193 56.5
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 2.0e-47 193.4 194 58.8
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 2.7e-47 193.0 199 56.8
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 4.5e-47 192.2 194 57.2
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 4.5e-47 192.2 194 56.2
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.5e-47 192.2 193 56.5
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 5.9e-47 191.8 192 56.8
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.9e-47 191.8 193 56.5
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 7.8e-47 191.4 192 56.2
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 7.8e-47 191.4 192 58.3
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 1.3e-46 190.7 196 55.6
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.3e-46 190.7 197 56.9
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.3e-46 190.7 193 57.0
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 1.7e-46 190.3 201 53.7
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 2.9e-46 189.5 194 56.7
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 2.9e-46 189.5 195 55.9
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.9e-46 189.1 189 56.1
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 3.9e-46 189.1 194 54.6
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 5.0e-46 188.7 189 56.1
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 5.0e-46 188.7 193 57.5
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 5.0e-46 188.7 203 56.2
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 6.6e-46 188.3 192 55.7
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 6.6e-46 188.3 190 56.3
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 6.6e-46 188.3 194 55.7
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 8.6e-46 188.0 194 58.2
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 8.6e-46 188.0 204 53.4
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 8.6e-46 188.0 203 55.7
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 1.1e-45 187.6 192 55.2
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 1.1e-45 187.6 206 55.3
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 1.5e-45 187.2 197 55.3
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.5e-45 187.2 201 55.2
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.9e-45 186.8 197 55.3
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 1.9e-45 186.8 193 55.4
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 2.5e-45 186.4 190 56.8
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 3.3e-45 186.0 200 54.5
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 4.3e-45 185.7 198 55.6
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 5.6e-45 185.3 196 56.6
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 7.3e-45 184.9 194 55.2
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 7.3e-45 184.9 191 55.5
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 7.3e-45 184.9 195 55.4
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 9.5e-45 184.5 194 55.7
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 9.5e-45 184.5 188 53.2
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 2.1e-44 183.3 194 54.6
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.8e-44 183.0 194 55.2
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.8e-44 183.0 192 57.3
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 2.8e-44 183.0 202 53.5
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 3.6e-44 182.6 196 55.1
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 6.1e-44 181.8 187 56.1
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 6.1e-44 181.8 194 54.6
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 8.0e-44 181.4 189 55.0
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.0e-44 181.4 194 54.6
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.0e-44 181.4 194 54.6
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.0e-44 181.4 194 54.6
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 8.0e-44 181.4 193 52.8
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.8e-43 180.3 192 54.7
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 4.0e-43 179.1 201 52.2
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.0e-43 179.1 185 54.1
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 5.2e-43 178.7 195 55.4
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 5.2e-43 178.7 191 54.5
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 5.2e-43 178.7 192 54.7
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.2e-42 177.6 197 50.8
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.2e-42 177.6 192 54.2
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.5e-42 177.2 205 51.2
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 2.6e-42 176.4 201 49.8
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 3.4e-42 176.0 196 52.6
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.4e-42 176.0 207 50.2
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 3.4e-42 176.0 187 52.4
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 4.4e-42 175.6 196 54.1
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 5.8e-42 175.3 190 55.3
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 7.5e-42 174.9 199 50.3
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.3e-41 174.1 203 50.7
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.3e-41 174.1 205 49.3
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.7e-41 173.7 200 49.0
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 1.7e-41 173.7 205 51.2
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.7e-41 173.7 199 48.7
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 2.2e-41 173.3 199 49.7
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 2.2e-41 173.3 199 49.2
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 3.7e-41 172.6 200 49.0
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 8.3e-41 171.4 199 47.7
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 1.4e-40 170.6 195 51.8
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.9e-40 170.2 194 53.6
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 4.1e-40 169.1 207 51.7
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.2e-40 167.9 115 74.8
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.2e-39 167.5 203 47.3
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.2e-39 167.5 200 48.5
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.2e-39 167.5 211 49.3
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.0e-39 166.8 152 61.2
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 2.7e-39 166.4 199 48.2
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 2.7e-39 166.4 199 48.2
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 2.7e-39 166.4 199 48.2
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 2.7e-39 166.4 129 64.3
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 6.0e-39 165.2 201 47.8
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 7.8e-39 164.9 200 47.0
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 1.0e-38 164.5 199 47.7
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.3e-38 164.1 200 48.5
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 1.7e-38 163.7 208 47.6
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.7e-38 163.7 191 51.3
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.7e-38 163.7 176 53.4
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 2.3e-38 163.3 204 48.5
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 3.0e-38 162.9 259 43.2
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 1.5e-37 160.6 116 70.7
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.5e-37 160.6 186 51.6
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.9e-37 160.2 115 69.6
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.9e-37 160.2 267 42.3
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 4.3e-37 159.1 199 46.7
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 7.3e-37 158.3 95 78.9
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.6e-36 157.1 191 50.8
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.8e-36 156.4 114 69.3
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.3e-35 153.3 134 61.2
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 2.3e-35 153.3 196 48.0
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.5e-34 150.6 195 47.7
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 2.6e-34 149.8 200 47.0
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 7.5e-34 148.3 192 47.9
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.7e-33 146.0 91 75.8
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 2.1e-31 140.2 84 76.2
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 7.8e-31 138.3 184 47.8
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.3e-30 137.5 198 43.4
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 6.4e-25 118.6 239 34.7
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 1.9e-24 117.1 114 50.9
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 5.4e-24 115.5 211 35.1
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 1.2e-23 114.4 67 76.1
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 8.1e-20 101.7 112 45.5
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 2.6e-18 96.7 63 73.0
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 2.7e-15 86.7 62 59.7
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 5.1e-14 82.4 130 46.9
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 6.6e-14 82.0 59 64.4
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.1e-11 74.7 127 40.9
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.8e-11 73.9 58 55.2
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.4e-10 69.7 60 56.7
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 4.9e-09 65.9 67 43.3
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 9.3e-08 61.6 71 54.9
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 1.2e-07 61.2 63 44.4
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 7.9e-07 58.5 71 53.5
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 7.9e-07 58.5 57 52.6


User provided reference genes

Program Settings