Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.3e-147 525.0 266 100.0
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.2e-115 420.2 254 86.6
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.2e-114 416.0 236 91.1
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.0e-101 370.9 217 88.0
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 3.3e-94 349.0 236 77.5
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 3.3e-86 322.4 233 72.5
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 2.1e-85 319.7 233 71.2
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 1.8e-84 316.6 234 70.5
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.1e-84 315.8 233 71.2
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 4.0e-84 315.5 233 70.0
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.0e-84 315.5 233 71.2
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 8.9e-84 314.3 233 70.0
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.9e-84 314.3 233 70.8
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 5.8e-83 311.6 250 67.2
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 5.8e-83 311.6 233 69.5
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 1.4e-81 307.0 236 70.3
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.9e-81 306.6 232 68.1
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.4e-81 306.2 233 67.4
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.2e-81 305.8 233 67.4
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.1e-81 305.4 233 67.4
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 9.2e-81 304.3 232 67.7
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 9.2e-81 304.3 232 67.2
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.2e-80 303.9 233 68.2
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 2.1e-80 303.1 234 68.4
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 2.1e-80 303.1 232 68.1
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.1e-80 303.1 244 64.8
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 2.7e-80 302.8 235 68.5
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.7e-80 302.8 232 68.5
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.5e-80 302.4 244 65.2
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 7.8e-80 301.2 228 69.7
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 7.8e-80 301.2 233 67.8
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 7.8e-80 301.2 232 67.2
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 1.0e-79 300.8 233 67.8
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.0e-79 300.8 250 64.8
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.3e-79 300.4 235 68.9
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.3e-79 300.4 232 67.7
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 1.7e-79 300.1 233 66.5
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 2.3e-79 299.7 232 67.2
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 2.3e-79 299.7 234 68.4
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.0e-79 299.3 228 69.3
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 3.9e-79 298.9 236 68.2
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.9e-79 298.9 232 67.7
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.1e-79 298.5 232 67.7
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 6.6e-79 298.1 232 66.4
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 6.6e-79 298.1 243 65.4
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 1.1e-78 297.4 232 67.2
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.5e-78 297.0 252 64.3
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 2.5e-78 296.2 232 65.1
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 3.3e-78 295.8 237 68.8
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 4.3e-78 295.4 233 65.2
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 7.3e-78 294.7 231 67.1
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 9.5e-78 294.3 231 66.2
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 1.2e-77 293.9 231 66.7
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 6.2e-77 291.6 234 65.8
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 6.2e-77 291.6 243 65.0
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 1.1e-76 290.8 236 64.4
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.1e-76 290.8 233 66.1
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 2.4e-76 289.7 233 66.1
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 3.1e-76 289.3 238 66.0
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.2e-76 288.5 244 62.7
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 5.2e-76 288.5 244 62.3
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 6.8e-76 288.1 236 64.4
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 6.8e-76 288.1 271 60.9
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 8.9e-76 287.7 235 64.3
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 1.2e-75 287.3 244 66.8
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.0e-75 286.6 244 62.3
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 2.0e-75 286.6 241 66.4
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.6e-75 286.2 179 84.9
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 2.6e-75 286.2 232 66.4
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 3.4e-75 285.8 244 61.9
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.4e-75 285.8 233 64.8
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.4e-75 285.4 244 61.9
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.4e-75 285.4 244 61.9
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.4e-75 285.4 244 61.9
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 5.8e-75 285.0 232 65.5
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.6e-75 284.6 244 61.9
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 1.7e-74 283.5 241 64.7
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 1.7e-74 283.5 232 63.8
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 2.2e-74 283.1 234 65.8
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.2e-74 283.1 235 63.8
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 2.9e-74 282.7 232 64.7
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 6.4e-74 281.6 229 64.2
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.1e-73 280.8 232 63.4
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.2e-73 279.3 233 64.8
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 3.2e-73 279.3 241 63.1
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.1e-72 276.6 233 63.9
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 2.7e-72 276.2 248 60.9
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.7e-72 276.2 231 62.3
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 3.5e-72 275.8 248 59.7
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 4.6e-72 275.4 244 62.3
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 1.3e-71 273.9 234 64.1
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 3.9e-71 272.3 228 61.8
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 1.5e-70 270.4 235 60.9
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 1.9e-70 270.0 231 60.6
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 1.9e-70 270.0 250 60.0
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 3.3e-70 269.2 234 61.1
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 3.3e-70 269.2 232 60.8
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 5.6e-70 268.5 234 60.7
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 7.3e-70 268.1 310 51.3
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 9.6e-70 267.7 223 63.7
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.2e-69 267.3 235 60.4
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.2e-69 267.3 230 59.1
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 1.2e-69 267.3 231 62.8
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 2.1e-69 266.5 230 59.1
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 2.1e-69 266.5 262 58.4
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 3.6e-69 265.8 230 58.7
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 3.6e-69 265.8 235 58.3
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 6.2e-69 265.0 232 60.8
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 8.1e-69 264.6 194 68.0
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.4e-68 263.8 232 60.3
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.4e-68 263.8 231 60.6
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.8e-68 263.5 232 60.8
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.1e-68 262.7 237 60.3
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.5e-67 260.4 217 62.7
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.5e-67 260.4 235 58.7
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 2.6e-67 259.6 318 49.1
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 3.4e-67 259.2 239 59.4
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 9.9e-67 257.7 231 57.1
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.7e-66 256.9 230 57.8
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 1.1e-65 254.2 232 58.2
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.1e-65 254.2 231 61.9
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 2.4e-65 253.1 239 58.2
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 5.4e-65 251.9 231 57.1
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 5.4e-65 251.9 235 56.6
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 5.4e-65 251.9 200 66.0
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.2e-64 250.8 230 58.3
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 3.5e-64 249.2 231 58.0
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 6.6e-63 245.0 239 58.2
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 2.8e-61 239.6 230 55.7
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 2.8e-61 239.6 230 55.7
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 2.8e-61 239.6 230 55.7
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 2.8e-61 239.6 230 57.0
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.8e-61 239.6 190 64.7
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 4.8e-61 238.8 243 54.3
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 8.1e-61 238.0 230 55.7
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 1.4e-60 237.3 236 57.2
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 2.4e-60 236.5 240 56.7
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 2.4e-57 226.5 133 80.5
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.0e-55 221.1 201 59.7
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.1e-54 217.6 150 72.0
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 1.3e-53 214.2 293 44.4
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 6.2e-53 211.8 150 70.0
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.4e-52 210.7 129 76.7
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 3.1e-52 209.5 233 50.6
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 4.0e-52 209.1 122 79.5
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 1.6e-48 197.2 237 47.3
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 6.7e-47 191.8 233 48.9
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 8.2e-45 184.9 105 80.0
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.1e-44 183.0 255 42.7
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 4.5e-43 179.1 284 40.5
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.9e-38 163.7 101 76.2
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.6e-32 144.1 286 35.7
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 2.7e-32 143.3 277 36.5
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 1.7e-26 124.0 130 57.7
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 6.5e-26 122.1 95 61.1
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.0e-23 114.8 91 54.9
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 6.3e-21 105.5 128 50.0
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 3.2e-17 93.2 96 43.8
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 9.4e-17 91.7 90 45.6
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 9.4e-17 91.7 97 55.7
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.4e-15 87.8 54 74.1
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 2.4e-12 77.0 120 46.7
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.6e-11 73.6 81 48.1
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 4.5e-11 72.8 75 57.3
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.0e-10 71.6 89 47.2
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 1.9e-09 67.4 75 53.3
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 2.1e-08 63.9 148 31.1
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.4e-07 61.2 57 54.4


User provided reference genes

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