Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 8.5e-148 526.9 259 100.0
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 4.4e-120 434.9 303 71.3
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 5.8e-120 434.5 306 71.9
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 5.6e-115 417.9 235 83.8
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 1.6e-114 416.4 312 66.7
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 2.0e-104 382.9 303 62.0
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 1.6e-101 373.2 303 60.7
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 3.5e-101 372.1 302 60.9
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 4.6e-101 371.7 303 60.1
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 2.3e-100 369.4 302 60.9
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 5.1e-100 368.2 303 59.4
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 2.5e-99 365.9 302 58.3
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 2.5e-99 365.9 303 60.7
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 9.5e-99 364.0 300 59.0
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 1.2e-98 363.6 302 57.9
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 1.2e-98 363.6 302 59.3
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 1.6e-98 363.2 259 67.2
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 1.6e-98 363.2 305 57.7
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 3.6e-98 362.1 299 60.2
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 4.7e-98 361.7 302 57.9
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 6.2e-98 361.3 302 58.9
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.4e-97 359.4 303 57.8
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 5.2e-97 358.2 302 57.9
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 6.8e-97 357.8 302 57.9
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 6.8e-97 357.8 305 56.7
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 6.8e-97 357.8 254 66.1
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.2e-96 357.1 303 57.4
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 2.6e-96 355.9 301 58.5
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 3.4e-96 355.5 304 57.2
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 3.4e-96 355.5 304 56.2
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 3.4e-96 355.5 300 57.7
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 4.4e-96 355.1 300 58.3
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 5.8e-96 354.8 302 59.9
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.7e-95 353.2 308 56.8
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 1.7e-95 353.2 302 57.3
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 2.2e-95 352.8 304 57.6
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 2.2e-95 352.8 303 57.8
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 3.8e-95 352.1 302 56.0
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 3.8e-95 352.1 302 57.0
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 4.9e-95 351.7 303 57.1
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 1.1e-94 350.5 302 57.3
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 1.9e-94 349.7 306 55.9
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 1.9e-94 349.7 303 56.8
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 3.2e-94 349.0 300 57.0
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 3.2e-94 349.0 248 63.3
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 1.6e-93 346.7 299 56.2
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 1.6e-93 346.7 302 57.0
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 2.1e-93 346.3 307 56.7
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 2.1e-93 346.3 302 57.3
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 2.7e-93 345.9 302 56.6
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 3.5e-93 345.5 306 56.5
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 3.5e-93 345.5 237 69.6
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 4.6e-93 345.1 302 56.3
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 4.6e-93 345.1 306 57.2
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 6.0e-93 344.7 306 56.2
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 6.0e-93 344.7 302 56.6
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 6.0e-93 344.7 303 55.4
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 1.3e-92 343.6 297 56.9
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 1.7e-92 343.2 308 55.8
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 2.3e-92 342.8 278 61.2
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 3.9e-92 342.0 305 55.4
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 5.1e-92 341.7 334 52.4
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 1.1e-91 340.5 306 54.9
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 1.1e-91 340.5 303 56.1
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 1.5e-91 340.1 306 54.9
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 2.5e-91 339.3 306 54.6
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 3.3e-91 339.0 308 55.5
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 9.6e-91 337.4 332 52.1
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 1.2e-90 337.0 316 53.5
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 2.1e-90 336.3 302 53.6
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 2.1e-90 336.3 303 55.1
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 2.1e-90 336.3 300 56.0
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 2.8e-90 335.9 302 55.6
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 3.6e-90 335.5 300 56.0
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 3.6e-90 335.5 300 54.0
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 4.7e-90 335.1 290 56.6
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 1.4e-89 333.6 309 55.0
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 2.4e-89 332.8 303 54.5
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 1.5e-88 330.1 286 58.0
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 4.4e-88 328.6 306 54.9
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 7.6e-88 327.8 306 54.6
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 9.9e-88 327.4 306 54.2
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 2.2e-87 326.2 303 53.5
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 3.8e-87 325.5 273 56.8
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 6.4e-87 324.7 296 53.0
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 1.4e-86 323.6 338 48.2
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 1.4e-86 323.6 361 49.0
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 1.9e-86 323.2 305 52.8
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 5.4e-86 321.6 323 52.0
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 1.2e-85 320.5 306 53.6
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 1.2e-85 320.5 306 52.9
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.1e-81 307.4 271 59.4
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 1.2e-80 303.9 283 54.1
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 2.9e-79 299.3 353 46.2
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 6.4e-79 298.1 309 51.5
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 3.9e-76 288.9 285 52.6
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.1e-75 287.3 299 51.8
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 1.5e-75 287.0 315 49.2
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 5.6e-75 285.0 342 45.9
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 1.7e-71 273.5 202 65.3
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 3.2e-70 269.2 199 63.3
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 4.2e-70 268.9 214 61.7
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 8.2e-66 254.6 192 66.7
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 7.6e-64 248.1 298 45.0
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.3e-63 247.3 299 44.8
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.3e-63 247.3 166 71.1
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 3.2e-62 242.7 292 45.9
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 2.3e-60 236.5 307 45.0
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 4.1e-57 225.7 254 46.5
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 1.3e-55 220.7 217 51.2
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 2.9e-55 219.5 297 40.7
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 2.7e-53 213.0 208 52.4
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 7.4e-51 204.9 184 56.5
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 5.7e-43 178.7 193 48.7
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 1.3e-42 177.6 224 42.9
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 8.2e-42 174.9 214 43.0
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.2e-40 171.0 131 62.6
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 4.5e-40 169.1 199 43.7
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 2.2e-39 166.8 195 44.6
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 3.0e-36 156.4 391 31.2
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 1.2e-27 127.9 83 68.7
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 2.6e-27 126.7 105 61.0
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 1.4e-25 120.9 157 42.7
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.2e-24 117.9 162 43.2
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 2.9e-23 113.2 148 41.9
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 1.5e-22 110.9 169 36.7
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 9.4e-22 108.2 218 33.5
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 4.0e-20 102.8 105 50.5
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.6e-16 90.9 81 56.8
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.4e-12 77.8 56 55.4
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 1.8e-12 77.4 60 53.3
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 5.2e-12 75.9 79 49.4
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 8.9e-12 75.1 154 35.1
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 6.3e-10 68.9 67 47.8
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 5.0e-07 59.3 37 70.3
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 7.3e-06 55.5 36 69.4


User provided reference genes

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