Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g040630 Amaranthus hybridus HOM05D000135 ORTHO05D000203 1.9e-37 159.8 80 100.0
AUR62013838 Chenopodium quinoa HOM05D000135 ORTHO05D000203 1.4e-22 110.5 77 67.5
Hma1.2p1_0370F.1_g137840 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 7.7e-18 94.7 82 56.1
MD05G1080100 Malus domestica HOM05D000135 ORTHO05D000203 2.2e-17 93.2 82 53.7
CSS0001406 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 8.5e-17 91.3 80 53.8
Cfa004515 Carpinus fangiana HOM05D000135 ORTHO05D000203 1.1e-16 90.9 82 57.3
CiPaw.05G006300 Carya illinoinensis HOM05D000135 ORTHO05D000203 1.1e-16 90.9 82 56.1
FvH4_2g06140 Fragaria vesca HOM05D000135 ORTHO05D000203 1.1e-16 90.9 82 54.9
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.1e-16 90.9 82 54.9
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.4e-16 90.5 82 53.7
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.4e-16 90.5 82 53.7
Prupe.8G123900 Prunus persica HOM05D000135 ORTHO05D000203 1.4e-16 90.5 82 56.1
FAN01G2430 Fragaria x ananassa HOM05D000135 ORTHO05D000203 1.9e-16 90.1 80 55.0
FAN01G2941 Fragaria x ananassa HOM05D000135 ORTHO05D000203 1.9e-16 90.1 80 55.0
Actinidia27955 Actinidia chinensis HOM05D000135 ORTHO05D000203 3.2e-16 89.4 76 59.2
CSS0017640 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 3.2e-16 89.4 80 52.5
Lj5P209T45 Lonicera japonica HOM05D000135 ORTHO05D000203 3.2e-16 89.4 79 60.8
CSS0005567 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 5.5e-16 88.6 82 52.4
Peaxi162Scf00152g00004 Petunia axillaris HOM05D000135 ORTHO05D000203 9.4e-16 87.8 74 60.8
RcHm_v2.0_Chr6g0257051 Rosa chinensis HOM05D000135 ORTHO05D000203 9.4e-16 87.8 82 53.7
Sc18g0004060 Simmondsia chinensis HOM05D000135 ORTHO05D000203 1.6e-15 87.0 76 57.9
Atru.chr5.2711 Acer truncatum HOM05D000135 ORTHO05D000203 2.1e-15 86.7 78 57.7
Ciclev10029360m.g Citrus clementina HOM05D000135 ORTHO05D000203 2.1e-15 86.7 82 57.3
MD10G1094100 Malus domestica HOM05D000135 ORTHO05D000203 6.1e-15 85.1 82 51.2
Solyc01g108190.3 Solanum lycopersicum HOM05D000135 ORTHO05D000203 6.1e-15 85.1 76 57.9
HanXRQChr16g0501291 Helianthus annuus HOM05D000135 ORTHO05D000203 1.0e-14 84.3 79 58.2
Lsat_1_v5_gn_5_112780 Lactuca sativa HOM05D000135 ORTHO05D000203 1.0e-14 84.3 79 58.2
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 1.4e-14 84.0 82 53.7
Potri.009G102500 Populus trichocarpa HOM05D000135 ORTHO05D000203 2.3e-14 83.2 82 51.2
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 3.0e-14 82.8 76 53.9
TWI79G0422 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 3.0e-14 82.8 82 47.6
Manes.07G082600 Manihot esculenta HOM05D000135 ORTHO05D000203 3.9e-14 82.4 82 50.0
Sopen01g050420 Solanum pennellii HOM05D000135 ORTHO05D000203 3.9e-14 82.4 76 55.3
QL11p035985 Quercus lobata HOM05D000135 ORTHO05D000203 6.7e-14 81.6 76 51.3
CAN.G1041.20 Capsicum annuum HOM05D000135 ORTHO05D000203 8.8e-14 81.3 76 53.9
PGR042G1319 Punica granatum HOM05D000135 ORTHO05D000203 8.8e-14 81.3 82 54.9
Migut.B00343 Erythranthe guttata HOM05D000135 ORTHO05D000203 1.5e-13 80.5 71 57.7
SGA_v2.0_scaffold90G27662 Striga asiatica HOM05D000135 ORTHO05D000203 1.5e-13 80.5 81 46.9
Aqoxy5G01242 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 2.0e-13 80.1 74 52.7
Lj4g0025559 Lotus japonicus HOM05D000135 ORTHO05D000203 2.6e-13 79.7 80 52.5
PSO170G0143 Papaver somniferum HOM05D000135 ORTHO05D000203 2.6e-13 79.7 75 56.0
PSO210G1763 Papaver somniferum HOM05D000135 ORTHO05D000203 3.3e-13 79.3 75 56.0
Glyma.07G212000 Glycine max HOM05D000135 ORTHO05D000203 4.4e-13 79.0 83 53.0
Nitab4.5_0001824g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000203 4.4e-13 79.0 76 55.3
CANSAT25G3257 Cannabis sativa HOM05D000135 ORTHO05D000203 5.7e-13 78.6 82 48.8
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 5.7e-13 78.6 76 51.3
Aqoxy5G01243 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 7.4e-13 78.2 74 54.1
arahy.Tifrunner.gnm1.ann1.0RG3QL Arachis hypogaea HOM05D000135 ORTHO05D000203 7.4e-13 78.2 80 52.5
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 7.4e-13 78.2 80 52.5
Haze_10074 Corylus avellana HOM05D000135 ORTHO05D000203 7.4e-13 78.2 78 50.0
Cfa004516 Carpinus fangiana HOM05D000135 ORTHO05D000203 9.7e-13 77.8 79 50.6
VMungo0251G3651 Vigna mungo HOM05D000135 ORTHO05D000203 1.3e-12 77.4 83 51.8
PGSC0003DMG402025892 Solanum tuberosum HOM05D000135 ORTHO05D000203 1.7e-12 77.0 76 52.6
GSVIVG01031752001 Vitis vinifera HOM05D000135 ORTHO05D000203 2.8e-12 76.3 76 52.6
Oeu025574.1 Olea europaea HOM05D000135 ORTHO05D000203 6.3e-12 75.1 78 52.6
Lalb_Chr09g0328311 Lupinus albus HOM05D000135 ORTHO05D000203 8.2e-12 74.7 82 52.4
MSTRG.20153 Avicennia marina HOM05D000135 ORTHO05D000203 1.1e-11 74.3 77 50.6
Ca_18679_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 1.1e-11 74.3 82 47.6
COL.COLO4_32661 Corchorus olitorius HOM05D000135 ORTHO05D000203 1.4e-11 73.9 80 46.2
MELO3C018445.2 Cucumis melo HOM05D000135 ORTHO05D000203 1.4e-11 73.9 74 45.9
Gorai.013G043400 Gossypium raimondii HOM05D000135 ORTHO05D000203 1.4e-11 73.9 77 49.4
Phvul.003G292700 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 1.4e-11 73.9 82 47.6
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 1.4e-11 73.9 80 51.2
Lalb_Chr16g0384691 Lupinus albus HOM05D000135 ORTHO05D000203 1.8e-11 73.6 80 47.5
Gohir.A13G040000 Gossypium hirsutum HOM05D000135 ORTHO05D000203 2.4e-11 73.2 77 48.1
Manes.10G056100 Manihot esculenta HOM05D000135 ORTHO05D000203 2.4e-11 73.2 76 51.3
Oeu010587.1 Olea europaea HOM05D001586 ORTHO05D001543 2.4e-11 73.2 80 52.5
Gohir.D13G038700 Gossypium hirsutum HOM05D000135 ORTHO05D000203 4.1e-11 72.4 77 48.1
Cc02_g18730 Coffea canephora HOM05D000135 ORTHO05D000203 5.3e-11 72.0 78 48.7
CsaV3_7G008650 Cucumis sativus L. HOM05D000135 ORTHO05D000203 5.3e-11 72.0 75 44.0
Glyma.02G133000 Glycine max HOM05D000135 ORTHO05D000203 5.3e-11 72.0 83 49.4
Atru.chr5.2710 Acer truncatum HOM05D000135 ORTHO05D000203 7.0e-11 71.6 78 50.0
Thecc.02G100300 Theobroma cacao HOM05D000135 ORTHO05D000203 7.0e-11 71.6 79 48.1
ClCG02G005880 Citrullus lanatus HOM05D000135 ORTHO05D000203 9.1e-11 71.2 74 43.2
TAR381G0503 Trochodendron aralioides HOM05D000135 ORTHO05D000203 2.0e-10 70.1 75 49.3
Sed0018642 Sechium edule HOM05D000135 ORTHO05D000203 3.5e-10 69.3 77 44.2
TPR.G28489 Trifolium pratense HOM05D000135 ORTHO05D000203 1.0e-09 67.8 91 41.8
ECA234G2126 Erigeron canadensis HOM05D000135 ORTHO05D000203 1.7e-09 67.0 55 58.2
Nitab4.5_0000292g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000203 2.2e-09 66.6 43 65.1
Medtr4g086260 Medicago truncatula HOM05D000135 ORTHO05D000203 2.9e-09 66.2 94 43.6
Nn5g30257 Nelumbo nucifera HOM05D000135 ORTHO05D000203 3.8e-09 65.9 74 43.2
THA.LOC104807357 Tarenaya hassleriana HOM05D000135 ORTHO05D000203 3.8e-09 65.9 81 48.1
Gohir.D03G021400 Gossypium hirsutum HOM05D000135 ORTHO05D000203 5.0e-09 65.5 77 44.2
Gorai.003G023100 Gossypium raimondii HOM05D000135 ORTHO05D000203 5.0e-09 65.5 77 44.2
TAR628G0143 Trochodendron aralioides HOM05D000135 ORTHO05D000203 6.5e-09 65.1 74 44.6
TAR628G0636 Trochodendron aralioides HOM05D000135 ORTHO05D000203 6.5e-09 65.1 74 44.6
COL.COLO4_11402 Corchorus olitorius HOM05D000135 ORTHO05D000203 8.5e-09 64.7 75 42.7
AL3G47450 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 1.1e-08 64.3 84 46.4
BcaC04g23042 Brassica carinata HOM05D000135 ORTHO05D000203 1.5e-08 63.9 80 46.2
C09p12790 Brassica napus HOM05D000135 ORTHO05D000203 1.5e-08 63.9 80 46.2
Gohir.D11G198300 Gossypium hirsutum HOM05D000135 ORTHO05D000203 2.5e-08 63.2 81 43.2
Gorai.007G212400 Gossypium raimondii HOM05D000135 ORTHO05D000203 2.5e-08 63.2 81 43.2
Ah.02g124280 Amaranthus hybridus HOM05D000135 ORTHO05D000203 3.2e-08 62.8 75 48.0
BcaB07g31784 Brassica carinata HOM05D000135 ORTHO05D000203 3.2e-08 62.8 80 47.5
A09p10820 Brassica napus HOM05D000135 ORTHO05D000203 3.2e-08 62.8 80 47.5
BolC9t54168H Brassica oleracea HOM05D000135 ORTHO05D000203 3.2e-08 62.8 80 47.5
BraA09t36724Z Brassica rapa HOM05D000135 ORTHO05D000203 3.2e-08 62.8 80 47.5
Thhalv10022869m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 3.2e-08 62.8 80 47.5
CARHR106030 Cardamine hirsuta HOM05D000135 ORTHO05D000203 4.2e-08 62.4 80 47.5
Potri.007G042900 Populus trichocarpa HOM05D000135 ORTHO05D000203 4.2e-08 62.4 46 65.2
PGR142G3781 Punica granatum HOM05D000135 ORTHO05D000203 4.2e-08 62.4 82 45.1
Ca_24776_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 5.5e-08 62.0 79 48.1
Duzib187G0789 Durio zibethinus HOM05D000135 ORTHO05D000203 5.5e-08 62.0 82 43.9
Sabra07G0038000 Salix brachista HOM05D000135 ORTHO05D000203 5.5e-08 62.0 38 73.7
AT2G15680 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 7.2e-08 61.6 80 47.5
CSS0044479 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 7.2e-08 61.6 56 48.2
Gohir.A11G191800 Gossypium hirsutum HOM05D000135 ORTHO05D000203 7.2e-08 61.6 82 43.9
Glyma.11G056500 Glycine max HOM05D000135 ORTHO05D000203 9.4e-08 61.2 86 45.3
Thecc.01G054700 Theobroma cacao HOM05D000135 ORTHO05D000203 9.4e-08 61.2 78 42.3
Cfa004010 Carpinus fangiana HOM05D000135 ORTHO05D000203 1.2e-07 60.8 73 47.9
CiPaw.01G018900 Carya illinoinensis HOM05D000135 ORTHO05D000203 1.2e-07 60.8 77 50.6
Haze_15414 Corylus avellana HOM05D000135 ORTHO05D000203 1.2e-07 60.8 73 49.3
Sp3g28920 Schrenkiella parvula HOM05D000135 ORTHO05D000203 1.2e-07 60.8 80 47.5
Carub.0003s2954 Capsella rubella HOM05D000135 ORTHO05D000203 1.6e-07 60.5 80 46.2
Dinv39860 Davidia involucrata HOM05D000135 ORTHO05D000203 1.6e-07 60.5 52 59.6
Phvul.002G019300 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 1.6e-07 60.5 80 50.0
Glyma.01G185600 Glycine max HOM05D000135 ORTHO05D000203 2.1e-07 60.1 86 47.7
Manes.13G127700 Manihot esculenta HOM05D000135 ORTHO05D000203 2.7e-07 59.7 70 47.1
Medtr5g017550 Medicago truncatula HOM05D000135 ORTHO05D000203 3.6e-07 59.3 79 45.6
Nitab4.5_0006001g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000203 4.7e-07 58.9 76 46.1
PGR142G2931 Punica granatum HOM05D000135 ORTHO05D000203 4.7e-07 58.9 74 43.2
Aa31LG8G13310 Aethionema arabicum HOM05D000135 ORTHO05D000203 6.1e-07 58.5 77 44.2
DCAR_007863 Daucus carota HOM05D000106 ORTHO05D003154 6.1e-07 58.5 50 50.0
Duzib147G1692 Durio zibethinus HOM05D000135 ORTHO05D000203 6.1e-07 58.5 78 42.3
CAN.G165.18 Capsicum annuum HOM05D000135 ORTHO05D000203 8.0e-07 58.2 78 41.0
Phvul.003G244275 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 8.0e-07 58.2 51 58.8
HPP92_010963 Vanilla planifolia HOM05D000135 ORTHO05D000203 8.0e-07 58.2 82 41.5
CDE04G2253 Ceratophyllum demersum HOM05D002198 ORTHO05D002409 1.0e-06 57.8 74 39.2
Medtr5g017510 Medicago truncatula HOM05D000135 ORTHO05D000203 1.0e-06 57.8 79 45.6
Medtr5g017560 Medicago truncatula HOM05D000135 ORTHO05D000203 1.0e-06 57.8 79 45.6
VMungo1215G0656 Vigna mungo HOM05D000135 ORTHO05D000203 1.0e-06 57.8 80 46.2
Actinidia36498 Actinidia chinensis HOM05D000135 ORTHO05D000203 1.4e-06 57.4 86 41.9
VMungo0251G3415 Vigna mungo HOM05D000135 ORTHO05D000203 1.4e-06 57.4 80 46.2
Atru.chr3.341 Acer truncatum HOM05D000135 ORTHO05D000203 1.8e-06 57.0 82 42.7
QL06p041758 Quercus lobata HOM05D000135 ORTHO05D000203 1.8e-06 57.0 81 40.7
ECA238G2850 Erigeron canadensis HOM05D000135 ORTHO05D000203 2.3e-06 56.6 76 39.5
Lj2g0000548 Lotus japonicus HOM05D000135 ORTHO05D000203 2.3e-06 56.6 79 45.6
TPR.G21277 Trifolium pratense HOM05D000135 ORTHO05D000203 3.0e-06 56.2 81 43.2
Eucgr.I00935 Eucalyptus grandis HOM05D000135 ORTHO05D000203 5.2e-06 55.5 78 42.3
HanXRQChr14g0442861 Helianthus annuus HOM05D000135 ORTHO05D000203 6.7e-06 55.1 73 43.8
Nitab4.5_0000728g0020 Nicotiana tabacum HOM05D000135 ORTHO05D000203 6.7e-06 55.1 38 60.5
arahy.Tifrunner.gnm1.ann1.D3D30P Arachis hypogaea HOM05D000135 ORTHO05D000203 8.8e-06 54.7 57 47.4
AUR62003869 Chenopodium quinoa HOM05D000135 ORTHO05D000203 8.8e-06 54.7 38 71.1
Lalb_Chr16g0378511 Lupinus albus HOM05D000135 ORTHO05D000203 8.8e-06 54.7 88 42.0


User provided reference genes

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