Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g040540 Amaranthus hybridus HOM05D000003 ORTHO05D008897 3.2e-80 301.6 143 100.0
Ah.04g156440 Amaranthus hybridus HOM05D000003 ORTHO05D008897 1.5e-32 143.3 136 53.7
Ah.12g061120 Amaranthus hybridus HOM05D000003 ORTHO05D000167 1.2e-31 140.2 137 50.4
Ah.12g061370 Amaranthus hybridus HOM05D000003 ORTHO05D000167 5.2e-30 134.8 137 49.6
Ah.02g115360 Amaranthus hybridus HOM05D003152 ORTHO05D004094 9.8e-29 130.6 114 50.0
Ah.04g154180 Amaranthus hybridus HOM05D000003 ORTHO05D006737 3.7e-28 128.6 144 44.4
Ah.01g008030 Amaranthus hybridus HOM05D000003 ORTHO05D006737 1.2e-23 113.6 111 51.4
EL10Ac5g12187 Beta vulgaris HOM05D000003 ORTHO05D000006 1.2e-23 113.6 134 42.5
EL10Ac7g16695 Beta vulgaris HOM05D000003 ORTHO05D000006 1.1e-22 110.5 134 41.0
Ah.15g100300 Amaranthus hybridus HOM05D000003 ORTHO05D000167 3.4e-21 105.5 82 59.8
Ah.12g056700 Amaranthus hybridus HOM05D000003 ORTHO05D006737 1.7e-20 103.2 144 37.5
Ah.08g212410 Amaranthus hybridus HOM05D000003 ORTHO05D006737 1.4e-19 100.1 87 54.0
Ah.07g198050 Amaranthus hybridus HOM05D000003 ORTHO05D008897 2.4e-19 99.4 120 38.3
Ah.03g146990 Amaranthus hybridus HOM05D000003 ORTHO05D008897 6.6e-17 91.3 132 42.4
Ah.16g108850 Amaranthus hybridus HOM05D000003 ORTHO05D006737 3.3e-16 89.0 137 34.3
Ah.07g196650 Amaranthus hybridus HOM05D000003 ORTHO05D006737 3.6e-15 85.5 66 60.6
EL10Ac2g03796 Beta vulgaris HOM05D000003 ORTHO05D011877 3.6e-15 85.5 119 36.1
Ah.15g100090 Amaranthus hybridus HOM05D000003 ORTHO05D006737 2.3e-14 82.8 106 37.7
Ah.14g078220 Amaranthus hybridus HOM05D000047 ORTHO05D000044 4.0e-14 82.0 69 52.2
Ah.02g119600 Amaranthus hybridus HOM05D000003 ORTHO05D006737 4.4e-13 78.6 137 34.3
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 1.7e-12 76.6 139 36.0
AUR62034216 Chenopodium quinoa HOM05D000003 ORTHO05D000167 2.9e-12 75.9 138 34.1
Cc04_g14660 Coffea canephora HOM05D000003 ORTHO05D000167 1.1e-11 73.9 138 34.1
RcHm_v2.0_Chr5g0031961 Rosa chinensis HOM05D000003 ORTHO05D006737 4.1e-11 72.0 141 34.0
PSO067G0070 Papaver somniferum HOM05D007979 ORTHO05D008897 5.4e-11 71.6 136 31.6
Ah.13g066800 Amaranthus hybridus HOM05D036432 ORTHO05D000004 9.2e-11 70.9 130 32.3
EL10Ac1g01410 Beta vulgaris HOM05D000003 ORTHO05D000167 3.5e-10 68.9 88 39.8
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 6.0e-10 68.2 135 36.3
CANSAT64G1939 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-09 65.9 139 36.0
Ah.02g120830 Amaranthus hybridus HOM05D000003 ORTHO05D006737 3.9e-09 65.5 78 35.9
Ah.11g043000 Amaranthus hybridus HOM05D000003 ORTHO05D006737 6.6e-09 64.7 66 50.0
EL10Ac8g20356 Beta vulgaris HOM05D004408 ORTHO05D000006 6.6e-09 64.7 119 30.3
AUR62005228 Chenopodium quinoa HOM05D000003 ORTHO05D000167 6.6e-09 64.7 119 33.6
FvH4_3g32552 Fragaria vesca HOM05D000003 ORTHO05D006737 6.6e-09 64.7 134 32.8
PSO782G1141 Papaver somniferum HOM05D000003 ORTHO05D008897 6.6e-09 64.7 136 32.4
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 8.6e-09 64.3 118 31.4
EL10Ac2g04418 Beta vulgaris HOM05D000003 ORTHO05D000004 1.5e-08 63.5 123 35.8
CANSAT35G0331 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-08 63.5 107 38.3
PSO724G0871 Papaver somniferum HOM05D000003 ORTHO05D008897 1.5e-08 63.5 135 29.6
AUR62030077 Chenopodium quinoa HOM05D000003 ORTHO05D000004 1.9e-08 63.2 139 30.2
PSO017G5341 Papaver somniferum HOM05D000003 ORTHO05D008897 2.5e-08 62.8 131 30.5
Ah.11g045490 Amaranthus hybridus HOM05D000003 ORTHO05D006737 3.3e-08 62.4 75 46.7
FvH4_6g21171 Fragaria vesca HOM05D000003 ORTHO05D006737 3.3e-08 62.4 134 32.1
PSO339G3221 Papaver somniferum HOM05D007979 ORTHO05D008897 3.3e-08 62.4 128 30.5
Prupe.2G133200 Prunus persica HOM05D027201 ORTHO05D008897 3.3e-08 62.4 140 27.9
CANSAT11G1818 Cannabis sativa HOM05D000003 ORTHO05D000004 4.3e-08 62.0 139 34.5
PSO063G1625 Papaver somniferum HOM05D007979 ORTHO05D008897 4.3e-08 62.0 127 31.5
RcHm_v2.0_Chr4g0395671 Rosa chinensis HOM05D000003 ORTHO05D006737 4.3e-08 62.0 111 36.0
FvH4_6g52701 Fragaria vesca HOM05D000003 ORTHO05D006737 5.6e-08 61.6 141 34.8
PSO063G5374 Papaver somniferum HOM05D007979 ORTHO05D008897 5.6e-08 61.6 127 31.5
PSO339G4879 Papaver somniferum HOM05D007979 ORTHO05D008897 5.6e-08 61.6 135 29.6
PSO478G4994 Papaver somniferum HOM05D007919 ORTHO05D006738 7.3e-08 61.2 115 33.9
PSO210G2752 Papaver somniferum HOM05D007979 ORTHO05D008897 9.5e-08 60.8 128 31.2
RcHm_v2.0_Chr7g0176911 Rosa chinensis HOM05D000003 ORTHO05D006737 1.2e-07 60.5 125 34.4
Ah.07g197280 Amaranthus hybridus HOM05D000003 ORTHO05D006737 1.6e-07 60.1 97 37.1
CANSAT35G1565 Cannabis sativa HOM05D000003 ORTHO05D000167 1.6e-07 60.1 110 35.5
QL04p033465 Quercus lobata HOM05D000003 ORTHO05D011877 1.6e-07 60.1 134 32.1
CANSAT01G2509 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-07 59.7 138 29.0
AUR62022548 Chenopodium quinoa HOM05D000051 ORTHO05D000015 2.1e-07 59.7 106 34.9
Lj2g0001240 Lotus japonicus HOM05D000003 ORTHO05D000167 2.1e-07 59.7 132 28.8
Sed0001376 Sechium edule HOM05D000003 ORTHO05D000167 2.1e-07 59.7 121 30.6
CANSAT56G2674 Cannabis sativa HOM05D000003 ORTHO05D000167 2.8e-07 59.3 119 37.0
AUR62018161 Chenopodium quinoa HOM05D000003 ORTHO05D000167 2.8e-07 59.3 119 31.1
Aa31sc128G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.6e-07 58.9 108 32.4
Aa31sc248G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.6e-07 58.9 108 32.4
Lj6A646G78 Lonicera japonica HOM05D000003 ORTHO05D000167 3.6e-07 58.9 136 32.4
PSO824G0080 Papaver somniferum HOM05D007979 ORTHO05D008897 3.6e-07 58.9 135 28.9
Prupe.1G162400 Prunus persica HOM05D000003 ORTHO05D000022 3.6e-07 58.9 116 32.8
EL10Ac2g02847 Beta vulgaris HOM05D000003 ORTHO05D000167 4.7e-07 58.5 112 31.2
BolC8t50384H Brassica oleracea HOM05D000003 ORTHO05D001091 4.7e-07 58.5 133 28.6
CANSAT78G2330 Cannabis sativa HOM05D000003 ORTHO05D000004 4.7e-07 58.5 116 38.8
PSO017G0823 Papaver somniferum HOM05D003407 ORTHO05D001026 4.7e-07 58.5 138 32.6
PSO675G4314 Papaver somniferum HOM05D007979 ORTHO05D008897 4.7e-07 58.5 128 30.5
RcHm_v2.0_Chr7g0227851 Rosa chinensis HOM05D008833 ORTHO05D000167 4.7e-07 58.5 137 28.5
CANSAT21G0988 Cannabis sativa HOM05D000003 ORTHO05D000004 6.2e-07 58.2 122 29.5
CANSAT21G0999 Cannabis sativa HOM05D000003 ORTHO05D000004 6.2e-07 58.2 111 35.1
CANSAT56G0969 Cannabis sativa HOM05D000003 ORTHO05D000167 6.2e-07 58.2 111 35.1
QL07p019929 Quercus lobata HOM05D000003 ORTHO05D000004 6.2e-07 58.2 128 31.2
CANSAT56G1897 Cannabis sativa HOM05D000003 ORTHO05D009135 8.1e-07 57.8 113 37.2
CANSAT56G3302 Cannabis sativa HOM05D000003 ORTHO05D009135 8.1e-07 57.8 110 36.4
FvH4_5g33393 Fragaria vesca HOM05D000003 ORTHO05D006737 8.1e-07 57.8 132 28.8
PSO017G6947 Papaver somniferum HOM05D007979 ORTHO05D008897 8.1e-07 57.8 134 29.1
PSO339G3527 Papaver somniferum HOM05D000003 ORTHO05D008897 8.1e-07 57.8 125 31.2
Atru.chr7.1015 Acer truncatum HOM05D000003 ORTHO05D000167 1.1e-06 57.4 122 30.3
CANSAT35G0782 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-06 57.4 116 38.8
CANSAT80G0717 Cannabis sativa HOM05D000003 ORTHO05D009135 1.1e-06 57.4 111 33.3
PSO017G2467 Papaver somniferum HOM05D007979 ORTHO05D008897 1.1e-06 57.4 101 29.7
FAN12G2205 Fragaria x ananassa HOM05D013595 ORTHO05D010662 1.4e-06 57.0 111 31.5
PSO170G0252 Papaver somniferum HOM05D007979 ORTHO05D008897 1.4e-06 57.0 135 29.6
Aa31sc85G50 Aethionema arabicum HOM05D000003 ORTHO05D001091 1.8e-06 56.6 67 38.8
CANSAT56G1118 Cannabis sativa HOM05D000003 ORTHO05D000167 1.8e-06 56.6 119 36.1
CANSAT64G2935 Cannabis sativa HOM05D000003 ORTHO05D009135 1.8e-06 56.6 113 35.4
PSO675G6329 Papaver somniferum HOM05D007979 ORTHO05D008897 1.8e-06 56.6 130 29.2
PSO832G2489 Papaver somniferum HOM05D000003 ORTHO05D008897 1.8e-06 56.6 135 28.1
CANSAT54G1600 Cannabis sativa HOM05D000003 ORTHO05D000167 2.4e-06 56.2 116 32.8
CANSAT56G1945 Cannabis sativa HOM05D000003 ORTHO05D000167 2.4e-06 56.2 144 31.9
Prupe.1G509200 Prunus persica HOM05D000003 ORTHO05D000022 2.4e-06 56.2 119 27.7
Atru.chr10.298 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-06 55.8 122 28.7
Atru.chr11.265 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-06 55.8 139 29.5
CANSAT25G2900 Cannabis sativa HOM05D000003 ORTHO05D009135 3.1e-06 55.8 111 36.9
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 3.1e-06 55.8 116 32.8
PSO210G4965 Papaver somniferum HOM05D000003 ORTHO05D008897 3.1e-06 55.8 128 28.1
PSO478G1683 Papaver somniferum HOM05D007979 ORTHO05D008897 3.1e-06 55.8 132 31.1
PSO675G5504 Papaver somniferum HOM05D007979 ORTHO05D008897 3.1e-06 55.8 127 29.1
RcHm_v2.0_Chr5g0065261 Rosa chinensis HOM05D000003 ORTHO05D006737 3.1e-06 55.8 106 34.9
Hund07702 Selenicereus undatus HOM05D001688 ORTHO05D001571 3.1e-06 55.8 121 28.9
CANSAT11G2638 Cannabis sativa HOM05D000003 ORTHO05D009135 4.0e-06 55.5 95 38.9
CANSAT21G2268 Cannabis sativa HOM05D000003 ORTHO05D000167 4.0e-06 55.5 111 33.3
Cc07_g20090 Coffea canephora HOM05D004823 ORTHO05D005814 4.0e-06 55.5 77 36.4
FvH4_4g24131 Fragaria vesca HOM05D000003 ORTHO05D015112 4.0e-06 55.5 125 31.2
Lj4g0011977 Lotus japonicus HOM05D000003 ORTHO05D000167 4.0e-06 55.5 140 27.1
PSO478G2646 Papaver somniferum HOM05D007979 ORTHO05D008897 4.0e-06 55.5 128 28.1
PSO761G0359 Papaver somniferum HOM05D007979 ORTHO05D008897 4.0e-06 55.5 127 30.7
Sed0013469 Sechium edule HOM05D000003 ORTHO05D000167 4.0e-06 55.5 133 29.3
Atru.chr1.2640 Acer truncatum HOM05D000003 ORTHO05D000126 5.2e-06 55.1 138 28.3
BolC7t41032H Brassica oleracea HOM05D000003 ORTHO05D000004 5.2e-06 55.1 127 29.1
CANSAT11G2606 Cannabis sativa HOM05D000003 ORTHO05D000167 5.2e-06 55.1 122 29.5
CANSAT25G0840 Cannabis sativa HOM05D000003 ORTHO05D009135 5.2e-06 55.1 114 35.1
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 5.2e-06 55.1 135 29.6
Prupe.7G076800 Prunus persica HOM05D000003 ORTHO05D000167 5.2e-06 55.1 145 29.7
QL07p011546 Quercus lobata HOM05D000003 ORTHO05D000167 5.2e-06 55.1 130 30.8
RcHm_v2.0_Chr6g0288751 Rosa chinensis HOM05D000003 ORTHO05D006737 5.2e-06 55.1 106 34.9
TAR346G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000004 5.2e-06 55.1 111 34.2
Aa31LG5G21780 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.8e-06 54.7 112 33.0
CANSAT35G0741 Cannabis sativa HOM05D000003 ORTHO05D000004 6.8e-06 54.7 114 34.2
CANSAT78G1876 Cannabis sativa HOM05D000003 ORTHO05D009135 6.8e-06 54.7 111 36.9
Lj1g0000509 Lotus japonicus HOM05D000003 ORTHO05D000004 6.8e-06 54.7 105 33.3
vmacro02127 Vaccinium macrocarpon HOM05D000003 ORTHO05D000004 6.8e-06 54.7 117 33.3
Aa31LG7G2740 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.9e-06 54.3 113 26.5
EL10Ac2g03044 Beta vulgaris HOM05D000003 ORTHO05D000006 8.9e-06 54.3 119 28.6
EL10Ac5g12505 Beta vulgaris HOM05D000003 ORTHO05D000167 8.9e-06 54.3 134 29.9
CANSAT64G2436 Cannabis sativa HOM05D000003 ORTHO05D000167 8.9e-06 54.3 111 33.3


User provided reference genes

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