Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 1.4e-162 576.2 298 100.0
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 2.7e-137 492.3 339 77.9
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 6.0e-137 491.1 304 83.9
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 7.1e-130 467.6 304 78.3
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 6.6e-128 461.1 304 78.3
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.2e-126 456.8 270 85.9
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 9.2e-122 440.7 304 73.0
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 3.5e-121 438.7 305 72.5
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 2.3e-120 436.0 304 73.7
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 6.6e-120 434.5 304 74.0
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 3.3e-119 432.2 304 72.7
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 3.3e-119 432.2 304 72.7
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 2.8e-118 429.1 303 70.6
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 4.7e-118 428.3 304 71.4
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 4.7e-118 428.3 304 72.0
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 8.1e-118 427.6 304 72.7
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 1.1e-117 427.2 293 74.1
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 1.8e-117 426.4 306 72.5
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.8e-117 426.4 304 72.4
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 2.4e-117 426.0 304 72.4
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 3.1e-117 425.6 285 75.4
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.1e-117 425.6 304 72.0
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.1e-117 425.6 304 71.1
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.0e-117 425.2 304 71.1
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 8.9e-117 424.1 304 71.1
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 8.9e-117 424.1 303 69.6
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.2e-116 423.7 304 71.7
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 1.2e-116 423.7 304 72.0
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 3.4e-116 422.2 304 71.4
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.4e-116 422.2 304 71.7
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 7.6e-116 421.0 305 70.5
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.3e-115 420.2 304 71.1
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.3e-115 420.2 304 70.1
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 1.3e-115 420.2 304 70.1
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 2.2e-115 419.5 304 69.7
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 2.9e-115 419.1 302 71.5
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 3.8e-115 418.7 304 72.0
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 8.4e-115 417.5 304 71.7
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 1.9e-114 416.4 296 72.6
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 2.4e-114 416.0 300 72.0
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 4.2e-114 415.2 303 71.9
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 5.4e-114 414.8 285 74.7
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 5.4e-114 414.8 285 71.9
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 7.1e-114 414.5 293 70.0
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 9.3e-114 414.1 286 74.1
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.2e-113 413.7 307 70.0
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 1.2e-113 413.7 304 69.7
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 1.2e-113 413.7 285 73.3
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.6e-113 413.3 304 68.8
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 2.1e-113 412.9 304 69.7
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 2.1e-113 412.9 284 73.6
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.1e-113 412.9 299 71.2
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 7.8e-113 411.0 305 69.8
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 1.7e-112 409.8 305 68.9
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 3.9e-112 408.7 285 73.0
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 8.7e-112 407.5 285 70.9
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 8.7e-112 407.5 307 68.4
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 1.9e-111 406.4 285 71.6
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 1.9e-111 406.4 304 68.4
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 1.9e-111 406.4 294 69.0
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 2.5e-111 406.0 285 73.3
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 2.5e-111 406.0 303 68.3
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 3.3e-111 405.6 295 68.8
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 3.3e-111 405.6 295 68.8
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 4.3e-111 405.2 304 68.4
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 4.3e-111 405.2 304 68.4
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 4.3e-111 405.2 285 71.2
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 5.6e-111 404.8 301 69.4
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 5.6e-111 404.8 282 71.3
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 5.6e-111 404.8 302 69.2
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 1.3e-110 403.7 385 57.4
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 1.3e-110 403.7 304 68.8
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 2.8e-110 402.5 301 67.8
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 2.8e-110 402.5 304 67.8
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 2.8e-110 402.5 301 67.8
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 3.6e-110 402.1 304 67.8
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 6.2e-110 401.4 304 67.1
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 1.1e-109 400.6 301 67.8
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 1.1e-109 400.6 294 67.0
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.1e-109 400.6 285 70.9
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.1e-109 400.6 292 68.2
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 1.4e-109 400.2 294 69.4
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.8e-109 399.8 283 68.9
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.8e-109 399.8 286 71.0
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 2.4e-109 399.4 304 67.4
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 3.1e-109 399.1 304 67.1
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.1e-109 399.1 302 66.9
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 3.1e-109 399.1 281 70.5
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 9.0e-109 397.5 293 67.9
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 1.2e-108 397.1 286 71.0
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 1.5e-108 396.7 286 67.8
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.5e-108 396.7 301 66.4
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 1.5e-108 396.7 290 69.7
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 2.6e-108 396.0 330 64.5
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 4.4e-108 395.2 270 71.9
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 4.4e-108 395.2 304 67.1
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 4.4e-108 395.2 304 69.1
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 9.9e-108 394.0 303 67.3
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 9.9e-108 394.0 280 68.9
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.3e-107 393.7 279 68.1
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 1.3e-107 393.7 339 63.4
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 2.2e-107 392.9 278 69.4
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 4.9e-107 391.7 278 68.7
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 6.4e-107 391.3 301 67.1
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 8.4e-107 391.0 278 69.4
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 1.9e-106 389.8 279 69.5
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 3.2e-106 389.0 302 66.2
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 3.2e-106 389.0 282 68.1
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 7.1e-106 387.9 308 65.3
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.6e-105 386.7 296 64.9
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 2.7e-105 386.0 353 59.8
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 4.6e-105 385.2 294 67.0
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 1.3e-104 383.6 294 66.7
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 6.6e-104 381.3 283 68.9
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 1.5e-103 380.2 302 64.9
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.9e-103 379.8 302 63.9
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 3.3e-103 379.0 305 62.0
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 5.6e-103 378.3 268 69.0
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 7.4e-103 377.9 283 69.3
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 6.2e-102 374.8 276 65.9
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.2e-100 370.5 266 71.4
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 4.5e-100 368.6 305 64.6
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 8.4e-99 364.4 305 61.0
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.2e-97 360.5 262 70.2
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.6e-97 360.1 243 73.3
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 5.1e-96 355.1 269 63.6
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 8.7e-96 354.4 297 63.0
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 2.8e-94 349.4 293 59.4
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 4.9e-91 338.6 240 70.8
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 1.1e-87 327.4 289 56.7
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 9.6e-87 324.3 297 54.2
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 5.0e-83 312.0 288 56.9
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.3e-77 292.0 211 70.6
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 6.9e-77 291.6 296 53.4
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 4.5e-76 288.9 297 52.5
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.9e-74 283.5 280 50.4
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 7.9e-73 278.1 248 57.3
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 3.9e-72 275.8 280 48.9
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 8.8e-72 274.6 280 48.6
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 5.7e-71 271.9 262 56.9
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 6.3e-70 268.5 290 53.8
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 3.1e-69 266.2 294 50.0
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 3.1e-69 266.2 280 52.5
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.2e-68 264.2 246 52.0
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 4.4e-63 245.7 202 62.4
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 1.0e-59 234.6 210 55.7
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.1e-58 231.1 328 45.1
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 7.2e-58 228.4 209 57.9
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 2.3e-56 223.4 193 62.7
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 5.7e-55 218.8 238 49.6
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 3.7e-54 216.1 171 64.3
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 1.6e-52 210.7 151 68.2
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 2.1e-49 200.3 289 39.1
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 1.0e-48 198.0 186 57.5
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 1.3e-46 191.0 149 65.8
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 8.8e-40 168.3 152 59.2
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 2.7e-36 156.8 275 33.8
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 1.1e-29 134.8 332 30.1
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 1.0e-27 128.3 107 64.5
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 3.4e-23 113.2 224 31.7
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 7.5e-23 112.1 290 29.0
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 2.2e-22 110.5 117 49.6
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 2.0e-20 104.0 293 29.7
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 6.0e-20 102.4 76 69.7
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.9e-18 97.4 130 47.7
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.9e-10 70.9 187 35.3
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 1.1e-08 65.1 58 50.0
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 5.2e-08 62.8 46 60.9


User provided reference genes

Program Settings