Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g040450 Amaranthus hybridus HOM05D002526 ORTHO05D004039 1.3e-41 172.6 80 100.0
EL10Ac2g04203 Beta vulgaris HOM05D002526 ORTHO05D004039 6.5e-30 133.7 70 84.3
AUR62031530 Chenopodium quinoa HOM05D002526 ORTHO05D004039 1.1e-29 132.9 70 84.3
AUR62012409 Chenopodium quinoa HOM05D002526 ORTHO05D004039 3.2e-29 131.3 70 82.9
Sc06g0000660 Simmondsia chinensis HOM05D002526 ORTHO05D004039 4.5e-23 110.9 70 67.1
Dinv30612 Davidia involucrata HOM05D002526 ORTHO05D004039 2.9e-22 108.2 68 66.2
Ciclev10024867m.g Citrus clementina HOM05D002526 ORTHO05D004039 5.0e-22 107.5 68 67.6
TAR383G0153 Trochodendron aralioides HOM05D002526 ORTHO05D004039 1.1e-21 106.3 68 64.7
GSVIVG01017348001 Vitis vinifera HOM05D002526 ORTHO05D004039 1.1e-21 106.3 68 64.7
CSS0025449 Camellia sinensis var. sinensis HOM05D002526 ORTHO05D004039 1.4e-21 105.9 70 64.3
DCAR_025516 Daucus carota HOM05D002526 ORTHO05D004039 1.4e-21 105.9 68 63.2
Cpa.g.sc938.2 Carica papaya HOM05D002526 ORTHO05D004039 2.5e-21 105.1 68 64.7
CSS0047118 Camellia sinensis var. sinensis HOM05D002526 ORTHO05D004039 3.2e-21 104.8 70 62.9
COL.COLO4_11933 Corchorus olitorius HOM05D002526 ORTHO05D004039 3.2e-21 104.8 68 63.2
Haze_16568 Corylus avellana HOM05D002526 ORTHO05D004039 3.2e-21 104.8 66 65.2
Hma1.2p1_0728F.1_g209320 Hydrangea macrophylla HOM05D002526 ORTHO05D004039 3.2e-21 104.8 70 62.9
Eucgr.L01004 Eucalyptus grandis HOM05D002526 ORTHO05D004039 5.5e-21 104.0 68 64.7
GSVIVG01035870001 Vitis vinifera HOM05D002526 ORTHO05D004039 5.5e-21 104.0 68 67.6
Dinv18210 Davidia involucrata HOM05D002526 ORTHO05D004039 1.2e-20 102.8 70 60.0
Duzib235G0559 Durio zibethinus HOM05D002526 ORTHO05D004039 1.2e-20 102.8 68 61.8
Prupe.1G482100 Prunus persica HOM05D002526 ORTHO05D004039 1.2e-20 102.8 70 62.9
Atru.chr1.2915 Acer truncatum HOM05D002526 ORTHO05D004039 1.6e-20 102.4 68 63.2
PGR031G2915 Punica granatum HOM05D002526 ORTHO05D004039 2.1e-20 102.1 70 60.0
TAR626G1496 Trochodendron aralioides HOM05D002526 ORTHO05D004039 2.1e-20 102.1 69 60.9
Aqoxy5G04051 Aquilegia oxysepala HOM05D002526 ORTHO05D004039 2.7e-20 101.7 68 64.7
CsaV3_3G046340 Cucumis sativus L. HOM05D002526 ORTHO05D004039 2.7e-20 101.7 68 64.7
Gohir.D06G191800 Gossypium hirsutum HOM05D002526 ORTHO05D004039 3.6e-20 101.3 68 61.8
Gorai.010G225000 Gossypium raimondii HOM05D002526 ORTHO05D004039 3.6e-20 101.3 68 61.8
Cpa.g.sc217.9 Carica papaya HOM05D002526 ORTHO05D004039 4.7e-20 100.9 68 61.8
MELO3C003705.2 Cucumis melo HOM05D002526 ORTHO05D004039 4.7e-20 100.9 68 64.7
MBI15_g03382_MAGBIO Magnolia biondii HOM05D002526 ORTHO05D004039 4.7e-20 100.9 71 62.0
vmacro19002 Vaccinium macrocarpon HOM05D002526 ORTHO05D004039 4.7e-20 100.9 68 63.2
Actinidia01741 Actinidia chinensis HOM05D002526 ORTHO05D004039 7.9e-20 100.1 61 70.5
ATR0800G085 Amborella trichopoda HOM05D002526 ORTHO05D004039 7.9e-20 100.1 67 62.7
Dinv08634 Davidia involucrata HOM05D002526 ORTHO05D004039 7.9e-20 100.1 67 61.2
Rhsim02G0202200 Rhododendron simsii HOM05D002526 ORTHO05D004039 1.4e-19 99.4 70 57.1
Nitab4.5_0002408g0010 Nicotiana tabacum HOM05D002526 ORTHO05D004039 1.8e-19 99.0 70 58.6
TWI63G1025 Tripterygium wilfordii HOM05D002526 ORTHO05D004039 1.8e-19 99.0 68 60.3
ECA234G3945 Erigeron canadensis HOM05D002526 ORTHO05D004039 2.3e-19 98.6 70 60.0
Manes.04G112150 Manihot esculenta HOM05D002526 ORTHO05D004039 2.3e-19 98.6 68 58.8
ClCG05G016820 Citrullus lanatus HOM05D002526 ORTHO05D004039 3.0e-19 98.2 67 64.2
Lj5A73T72 Lonicera japonica HOM05D002526 ORTHO05D004039 3.0e-19 98.2 66 62.1
Sed0014976 Sechium edule HOM05D002526 ORTHO05D004039 3.0e-19 98.2 67 64.2
Thecc.06G028500 Theobroma cacao HOM05D002526 ORTHO05D004039 3.0e-19 98.2 68 58.8
QL02p021463 Quercus lobata HOM05D002526 ORTHO05D004039 3.9e-19 97.8 69 58.0
QL03p020405 Quercus lobata HOM05D002526 ORTHO05D004039 3.9e-19 97.8 66 60.6
QL05p030840 Quercus lobata HOM05D002526 ORTHO05D004039 3.9e-19 97.8 66 60.6
Cc04_g04440 Coffea canephora HOM05D002526 ORTHO05D004039 5.1e-19 97.4 70 57.1
COL.COLO4_18869 Corchorus olitorius HOM05D002526 ORTHO05D004039 5.1e-19 97.4 67 62.7
Hma1.2p1_0243F.1_g100890 Hydrangea macrophylla HOM05D002526 ORTHO05D004039 5.1e-19 97.4 70 58.6
vmacro11180 Vaccinium macrocarpon HOM05D002526 ORTHO05D004039 5.1e-19 97.4 67 61.2
Peaxi162Scf01131g00116 Petunia axillaris HOM05D002526 ORTHO05D004039 6.7e-19 97.1 67 59.7
CAN.G282.95 Capsicum annuum HOM05D002526 ORTHO05D004039 1.1e-18 96.3 70 60.0
Migut.A00034 Erythranthe guttata HOM05D002526 ORTHO05D004039 1.1e-18 96.3 70 57.1
CiPaw.01G248800 Carya illinoinensis HOM05D002526 ORTHO05D004039 1.5e-18 95.9 73 57.5
HanXRQChr10g0302851 Helianthus annuus HOM05D002526 ORTHO05D004039 1.5e-18 95.9 68 60.3
Sopen01g001070 Solanum pennellii HOM05D002526 ORTHO05D004039 1.5e-18 95.9 70 60.0
Nitab4.5_0002202g0050 Nicotiana tabacum HOM05D000238 ORTHO05D004039 2.0e-18 95.5 70 61.4
Actinidia22335 Actinidia chinensis HOM05D002526 ORTHO05D004039 2.6e-18 95.1 68 57.4
Cc08_g00510 Coffea canephora HOM05D002526 ORTHO05D004039 3.3e-18 94.7 71 53.5
MD15G1126200 Malus domestica HOM05D002526 ORTHO05D004039 3.3e-18 94.7 69 58.0
PSO017G2139 Papaver somniferum HOM05D002526 ORTHO05D004039 3.3e-18 94.7 70 61.4
SGA_v2.0_scaffold20G09110 Striga asiatica HOM05D002526 ORTHO05D004039 3.3e-18 94.7 70 54.3
CANSAT56G3976 Cannabis sativa HOM05D002526 ORTHO05D004039 4.4e-18 94.4 61 65.6
RcHm_v2.0_Chr6g0297781 Rosa chinensis HOM05D002526 ORTHO05D004039 4.4e-18 94.4 67 58.2
Haze_21504 Corylus avellana HOM05D002526 ORTHO05D004039 5.7e-18 94.0 67 59.7
Oeu010901.1 Olea europaea HOM05D002526 ORTHO05D004039 5.7e-18 94.0 63 58.7
SalBow4G1093 Salvia bowleyana HOM05D002526 ORTHO05D004039 5.7e-18 94.0 70 52.9
Glyma.17G211700 Glycine max HOM05D002526 ORTHO05D004039 7.4e-18 93.6 69 58.0
Nitab4.5_0002042g0080 Nicotiana tabacum HOM05D002526 ORTHO05D004039 7.4e-18 93.6 70 55.7
Manes.03G013800 Manihot esculenta HOM05D002526 ORTHO05D004039 9.7e-18 93.2 70 52.9
Glyma.14G116000 Glycine max HOM05D002526 ORTHO05D004039 1.3e-17 92.8 69 58.0
RcHm_v2.0_Chr2g0135111 Rosa chinensis HOM05D002526 ORTHO05D004039 1.3e-17 92.8 67 58.2
Sabra06G0200000 Salix brachista HOM05D002526 ORTHO05D004039 1.3e-17 92.8 67 58.2
Solyc01g005030.4 Solanum lycopersicum HOM05D000238 ORTHO05D004039 1.3e-17 92.8 70 57.1
MSTRG.11145 Avicennia marina HOM05D002526 ORTHO05D004039 1.7e-17 92.4 68 58.8
FAN15G3613 Fragaria x ananassa HOM05D002526 ORTHO05D004039 1.7e-17 92.4 67 56.7
Lsat_1_v5_gn_5_131501 Lactuca sativa HOM05D002526 ORTHO05D004039 1.7e-17 92.4 68 58.8
PSO170G0531 Papaver somniferum HOM05D002526 ORTHO05D004039 1.7e-17 92.4 70 60.0
PGSC0003DMG400022766 Solanum tuberosum HOM05D002526 ORTHO05D004039 1.7e-17 92.4 70 57.1
TWI75G1436 Tripterygium wilfordii HOM05D002526 ORTHO05D004039 1.7e-17 92.4 67 59.7
VMungo1309G0620 Vigna mungo HOM05D002526 ORTHO05D004039 1.7e-17 92.4 61 62.3
Cfa013135 Carpinus fangiana HOM05D002526 ORTHO05D004039 2.2e-17 92.0 67 58.2
Ciclev10007749m.g Citrus clementina HOM05D002526 ORTHO05D004039 2.2e-17 92.0 67 56.7
FAN05G0514 Fragaria x ananassa HOM05D002526 ORTHO05D004039 2.2e-17 92.0 68 57.4
FAN20G0422 Fragaria x ananassa HOM05D002526 ORTHO05D004039 2.2e-17 92.0 65 58.5
Manes.16G122800 Manihot esculenta HOM05D002526 ORTHO05D004039 2.2e-17 92.0 69 53.6
PGR044G1101 Punica granatum HOM05D002526 ORTHO05D004039 2.2e-17 92.0 68 55.9
Zm00001eb387270 Zea mays HOM05D002526 ORTHO05D004039 2.2e-17 92.0 67 56.7
Duzib168G1931 Durio zibethinus HOM05D002526 ORTHO05D004039 2.8e-17 91.7 70 55.7
FvH4_2g28950 Fragaria vesca HOM05D002526 ORTHO05D004039 2.8e-17 91.7 67 56.7
FvH4_6g29550 Fragaria vesca HOM05D002526 ORTHO05D004039 2.8e-17 91.7 68 57.4
FAN14G1931 Fragaria x ananassa HOM05D002526 ORTHO05D004039 2.8e-17 91.7 68 57.4
FAN15G1565 Fragaria x ananassa HOM05D002526 ORTHO05D004039 2.8e-17 91.7 67 55.2
Nitab4.5_0002905g0010 Nicotiana tabacum HOM05D002526 ORTHO05D004039 2.8e-17 91.7 70 60.0
Thecc.09G023400 Theobroma cacao HOM05D002526 ORTHO05D004039 2.8e-17 91.7 68 58.8
FAN27G2575 Fragaria x ananassa HOM05D002526 ORTHO05D004039 3.7e-17 91.3 67 55.2
Lj5g0016331 Lotus japonicus HOM05D002526 ORTHO05D004039 3.7e-17 91.3 69 56.5
Oeu060148.1 Olea europaea HOM05D002526 ORTHO05D004039 3.7e-17 91.3 70 54.3
Potri.018G026400 Populus trichocarpa HOM05D002526 ORTHO05D004039 3.7e-17 91.3 67 56.7
FAN09G4722 Fragaria x ananassa HOM05D002526 ORTHO05D004039 4.8e-17 90.9 68 57.4
FAN24G0483 Fragaria x ananassa HOM05D002526 ORTHO05D004039 6.3e-17 90.5 67 56.7
VMungo0647G2226 Vigna mungo HOM05D002526 ORTHO05D004039 6.3e-17 90.5 63 58.7
Phvul.001G050700 Phaseolus vulgaris HOM05D002526 ORTHO05D004039 8.2e-17 90.1 67 56.7
RcHm_v2.0_Chr2g0121151 Rosa chinensis HOM05D002526 ORTHO05D004039 8.2e-17 90.1 68 58.8
Sabra18G0028900 Salix brachista HOM05D002526 ORTHO05D004039 8.2e-17 90.1 67 56.7
Potri.006G255700 Populus trichocarpa HOM05D002526 ORTHO05D004039 1.1e-16 89.7 67 56.7
Ca_13032_v3 Cicer arietinum L. HOM05D002526 ORTHO05D004039 1.4e-16 89.4 69 58.0
Phvul.009G092300 Phaseolus vulgaris HOM05D002526 ORTHO05D004039 1.4e-16 89.4 61 60.7
Oeu033133.1 Olea europaea HOM05D002526 ORTHO05D004039 1.8e-16 89.0 67 53.7
Oeu033134.1 Olea europaea HOM05D002526 ORTHO05D004039 1.8e-16 89.0 67 53.7
MD17G1213100 Malus domestica HOM05D002526 ORTHO05D004039 2.4e-16 88.6 72 55.6
unitig_748.g8081 Utricularia gibba HOM05D002526 ORTHO05D004039 2.4e-16 88.6 70 54.3
HPP92_020090 Vanilla planifolia HOM05D002526 ORTHO05D004039 2.4e-16 88.6 61 57.4
Prupe.3G088500 Prunus persica HOM05D002526 ORTHO05D004039 3.1e-16 88.2 72 55.6
Os06g0639500 Oryza sativa ssp. japonica HOM05D002526 ORTHO05D004039 4.1e-16 87.8 67 55.2
Duzib150G0097 Durio zibethinus HOM05D002526 ORTHO05D004039 5.3e-16 87.4 67 59.7
Medtr1g012610 Medicago truncatula HOM05D002526 ORTHO05D004039 5.3e-16 87.4 69 55.1
Glyma.04G065900 Glycine max HOM05D002526 ORTHO05D004039 9.1e-16 86.7 60 61.7
Oeu053118.1 Olea europaea HOM05D002526 ORTHO05D004039 9.1e-16 86.7 67 52.2
SalBow2G3132 Salvia bowleyana HOM05D002526 ORTHO05D004039 1.2e-15 86.3 66 54.5
CiPaw.07G224000 Carya illinoinensis HOM05D002526 ORTHO05D004039 1.6e-15 85.9 68 54.4
Lj8A705T45 Lonicera japonica HOM05D002526 ORTHO05D004039 1.6e-15 85.9 52 67.3
Psat6g029080 Pisum sativum HOM05D002526 ORTHO05D004039 2.0e-15 85.5 69 53.6
Glyma.06G067300 Glycine max HOM05D002526 ORTHO05D004039 2.6e-15 85.1 60 61.7
ECA233G5282 Erigeron canadensis HOM05D002526 ORTHO05D004039 3.5e-15 84.7 69 50.7
HanXRQChr13g0403061 Helianthus annuus HOM05D002526 ORTHO05D004039 3.5e-15 84.7 69 50.7
CiPaw.08G010500 Carya illinoinensis HOM05D002526 ORTHO05D004039 4.5e-15 84.3 58 56.9
SGA_v2.0_scaffold5G02703 Striga asiatica HOM05D002526 ORTHO05D004039 7.7e-15 83.6 61 55.7
RcHm_v2.0_Chr4g0394841 Rosa chinensis HOM05D002526 ORTHO05D004039 1.0e-14 83.2 68 55.9
Aa31LG2G17730 Aethionema arabicum HOM05D002526 ORTHO05D004039 1.7e-14 82.4 53 66.0
Gohir.D05G057600 Gossypium hirsutum HOM05D002526 ORTHO05D004039 2.2e-14 82.0 69 58.0
Gorai.009G058700 Gossypium raimondii HOM05D002526 ORTHO05D004039 2.2e-14 82.0 69 58.0
AL7G19620 Arabidopsis lyrata HOM05D002526 ORTHO05D004039 2.9e-14 81.6 52 65.4
CARHR240130 Cardamine hirsuta HOM05D002526 ORTHO05D004039 2.9e-14 81.6 55 63.6
Lalb_Chr24g0402131 Lupinus albus HOM05D002526 ORTHO05D004039 2.9e-14 81.6 68 52.9
DCAR_001540 Daucus carota HOM05D002526 ORTHO05D004039 3.8e-14 81.3 61 55.7
Lsat_1_v5_gn_6_21201 Lactuca sativa HOM05D002526 ORTHO05D004039 3.8e-14 81.3 69 50.7
THA.LOC104818615 Tarenaya hassleriana HOM05D002526 ORTHO05D004039 3.8e-14 81.3 52 63.5
arahy.Tifrunner.gnm1.ann1.JLJY7Q Arachis hypogaea HOM05D002526 ORTHO05D004039 5.0e-14 80.9 68 55.9
arahy.Tifrunner.gnm1.ann1.V3VQ7T Arachis hypogaea HOM05D002526 ORTHO05D004039 5.0e-14 80.9 68 55.9
Carub.0007s0835 Capsella rubella HOM05D002526 ORTHO05D004039 5.0e-14 80.9 52 65.4
AT4G32250 Arabidopsis thaliana HOM05D002526 ORTHO05D004039 6.5e-14 80.5 52 65.4
BcaC09g52006 Brassica carinata HOM05D002526 ORTHO05D004039 6.5e-14 80.5 52 63.5
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 6.5e-14 80.5 52 63.5
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 6.5e-14 80.5 52 63.5
BolC1t00669H Brassica oleracea HOM05D002526 ORTHO05D004039 6.5e-14 80.5 52 63.5
BraA01t00577Z Brassica rapa HOM05D002526 ORTHO05D004039 6.5e-14 80.5 52 63.5
Sp7g30000 Schrenkiella parvula HOM05D002526 ORTHO05D004039 6.5e-14 80.5 52 63.5
TPR.G15671 Trifolium pratense HOM05D002526 ORTHO05D004039 1.1e-13 79.7 69 49.3
Thhalv10024659m.g Eutrema salsugineum HOM05D002526 ORTHO05D004039 1.9e-13 79.0 52 61.5
Mapoly0051s0037 Marchantia polymorpha HOM05D002526 ORTHO05D004039 3.2e-13 78.2 59 54.2
Peaxi162Scf00349g00002 Petunia axillaris HOM05D002526 ORTHO05D004039 6.1e-12 73.9 53 60.4
Pp3c19_20230 Physcomitrium patens HOM05D002526 ORTHO05D004039 6.1e-12 73.9 63 50.8
SEGI_38229 Sequoiadendron giganteum HOM05D002526 ORTHO05D004039 1.8e-11 72.4 70 41.4
SEGI_40489 Sequoiadendron giganteum HOM05D002526 ORTHO05D004039 1.8e-11 72.4 70 41.4
SEGI_14926 Sequoiadendron giganteum HOM05D002526 ORTHO05D004039 8.8e-11 70.1 73 41.1
BcaB03g12735 Brassica carinata HOM05D002526 ORTHO05D004039 2.6e-10 68.6 53 58.5
A08p18280 Brassica napus HOM05D002526 ORTHO05D004039 7.5e-10 67.0 52 57.7
BraA08t33785Z Brassica rapa HOM05D002526 ORTHO05D004039 7.5e-10 67.0 52 57.7
BcaC01g01034 Brassica carinata HOM05D002526 ORTHO05D004039 9.7e-10 66.6 52 57.7
C03p87430 Brassica napus HOM05D002526 ORTHO05D004039 9.7e-10 66.6 52 57.7
C03p87440 Brassica napus HOM05D002526 ORTHO05D004039 9.7e-10 66.6 52 57.7
BolC3t21052H Brassica oleracea HOM05D002526 ORTHO05D004039 2.8e-09 65.1 52 55.8
Atru.chr7.2442 Acer truncatum HOM05D002526 ORTHO05D004039 8.2e-09 63.5 44 59.1
AagrBONN_evm.TU.Sc2ySwM_117.2834 Anthoceros agrestis HOM05D002526 ORTHO05D004039 1.8e-08 62.4 49 53.1
BraA08t33786Z Brassica rapa HOM05D002526 ORTHO05D004039 3.1e-08 61.6 52 55.8
SMO143G0194 Selaginella moellendorffii HOM05D002526 ORTHO05D004039 1.6e-07 59.3 46 52.2
A08p18290 Brassica napus HOM05D002526 ORTHO05D004039 2.7e-07 58.5 49 55.1


User provided reference genes

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