Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g040100 Amaranthus hybridus HOM05D000034 ORTHO05D000277 1.0e-114 416.8 216 100.0
Ah.14g078690 Amaranthus hybridus HOM05D000034 ORTHO05D000277 6.5e-85 317.8 266 68.8
Ah.09g231530 Amaranthus hybridus HOM05D000052 ORTHO05D000277 8.8e-82 307.4 234 73.9
Ah.01g008150 Amaranthus hybridus HOM05D001651 ORTHO05D000277 1.5e-57 226.9 169 73.4
Ah.12g064350 Amaranthus hybridus HOM05D000034 ORTHO05D000277 4.6e-30 135.6 81 80.2
Ah.01g013880 Amaranthus hybridus HOM05D000034 ORTHO05D000277 1.4e-18 97.4 62 83.9
TWI18G0893 Tripterygium wilfordii HOM05D001651 ORTHO05D000277 1.4e-15 87.4 84 45.2
TWI63G1547 Tripterygium wilfordii HOM05D001651 ORTHO05D000277 3.5e-14 82.8 241 27.0
EL10Ac6g14057 Beta vulgaris HOM05D000034 ORTHO05D019535 3.0e-13 79.7 164 33.5
EL10Ac9g22375 Beta vulgaris HOM05D000034 ORTHO05D000037 1.9e-12 77.0 164 32.9
AUR62044295 Chenopodium quinoa HOM05D000034 ORTHO05D000277 2.4e-10 70.1 92 38.0
PSO017G1737 Papaver somniferum HOM05D000034 ORTHO05D000037 4.1e-10 69.3 127 31.5
PSO210G6693 Papaver somniferum HOM05D000034 ORTHO05D000277 5.3e-10 68.9 121 30.6
PSO675G2744 Papaver somniferum HOM05D000034 ORTHO05D000037 5.3e-10 68.9 79 38.0
MELO3C032206.2 Cucumis melo HOM05D001651 ORTHO05D000277 6.9e-10 68.6 133 29.3
MELO3C035680.2 Cucumis melo HOM05D001651 ORTHO05D000277 6.9e-10 68.6 118 32.2
EL10Ac9g22348 Beta vulgaris HOM05D000034 ORTHO05D000277 9.0e-10 68.2 81 38.3
MELO3C028082.2 Cucumis melo HOM05D001651 ORTHO05D000277 1.5e-09 67.4 113 31.0
PSO541G2803 Papaver somniferum HOM05D000034 ORTHO05D000277 1.5e-09 67.4 79 38.0
MELO3C034777.2 Cucumis melo HOM05D001651 ORTHO05D000277 2.0e-09 67.0 113 31.0
Ah.01g010170 Amaranthus hybridus HOM05D000034 ORTHO05D000277 3.4e-09 66.2 81 33.3
EL10Ac1g02210 Beta vulgaris HOM05D000034 ORTHO05D000277 3.4e-09 66.2 122 30.3
RcHm_v2.0_Chr1g0343671 Rosa chinensis HOM05D000034 ORTHO05D000277 3.4e-09 66.2 80 35.0
RcHm_v2.0_Chr5g0072391 Rosa chinensis HOM05D000034 ORTHO05D000277 3.4e-09 66.2 80 35.0
Hund23417 Selenicereus undatus HOM05D000034 ORTHO05D000277 3.4e-09 66.2 233 27.0
vmacro00489 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 3.4e-09 66.2 116 35.3
Ah.15g098690 Amaranthus hybridus HOM05D000034 ORTHO05D000277 4.5e-09 65.9 80 37.5
EL10Ac7g17712 Beta vulgaris HOM05D000034 ORTHO05D000277 5.9e-09 65.5 81 35.8
EL10Ac9g22471 Beta vulgaris HOM05D000034 ORTHO05D000277 5.9e-09 65.5 194 26.8
FAN15G3570 Fragaria x ananassa HOM05D000034 ORTHO05D000277 5.9e-09 65.5 80 38.8
EL10Ac2g03585 Beta vulgaris HOM05D000034 ORTHO05D000277 7.6e-09 65.1 196 27.0
PSO017G7284 Papaver somniferum HOM05D000034 ORTHO05D000277 7.6e-09 65.1 79 38.0
PSO063G4844 Papaver somniferum HOM05D000034 ORTHO05D000277 7.6e-09 65.1 79 38.0
PSO478G0310 Papaver somniferum HOM05D000034 ORTHO05D000277 7.6e-09 65.1 79 38.0
Prupe.4G257700 Prunus persica HOM05D000034 ORTHO05D000277 7.6e-09 65.1 127 31.5
AUR62006275 Chenopodium quinoa HOM05D000034 ORTHO05D000277 1.0e-08 64.7 166 28.3
FAN26G1288 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.0e-08 64.7 80 38.8
Thecc.09G268100 Theobroma cacao HOM05D000034 ORTHO05D000277 1.0e-08 64.7 140 30.7
AUR62038399 Chenopodium quinoa HOM05D000034 ORTHO05D000277 1.3e-08 64.3 193 27.5
FvH4_1g28531 Fragaria vesca HOM05D000034 ORTHO05D000277 1.3e-08 64.3 126 29.4
EL10Ac7g16515 Beta vulgaris HOM05D000034 ORTHO05D000277 1.7e-08 63.9 122 29.5
CSS0042392 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 1.7e-08 63.9 84 39.3
AUR62041902 Chenopodium quinoa HOM05D000034 ORTHO05D000277 1.7e-08 63.9 112 33.0
MELO3C030792.2 Cucumis melo HOM05D001651 ORTHO05D000277 1.7e-08 63.9 106 32.1
Ah.01g005960 Amaranthus hybridus HOM05D000034 ORTHO05D000277 2.2e-08 63.5 81 35.8
AUR62000104 Chenopodium quinoa HOM05D000034 ORTHO05D000277 2.2e-08 63.5 81 34.6
Ah.09g223970 Amaranthus hybridus HOM05D000034 ORTHO05D000277 2.9e-08 63.2 80 36.2
Ah.14g081720 Amaranthus hybridus HOM05D000034 ORTHO05D000277 2.9e-08 63.2 80 36.2
AUR62037486 Chenopodium quinoa HOM05D000034 ORTHO05D000277 2.9e-08 63.2 110 31.8
MELO3C032742.2 Cucumis melo HOM05D001651 ORTHO05D000277 2.9e-08 63.2 128 28.9
Ah.08g221600 Amaranthus hybridus HOM05D000034 ORTHO05D000277 3.8e-08 62.8 198 28.8
CSS0040966 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 3.8e-08 62.8 96 35.4
FAN09G2726 Fragaria x ananassa HOM05D008011 ORTHO05D000277 3.8e-08 62.8 85 34.1
RcHm_v2.0_Chr7g0199171 Rosa chinensis HOM05D008011 ORTHO05D000277 3.8e-08 62.8 85 31.8
Gorai.002G217500 Gossypium raimondii HOM05D000034 ORTHO05D000277 5.0e-08 62.4 154 31.2
MD06G1073100 Malus domestica HOM05D008011 ORTHO05D000277 5.0e-08 62.4 233 27.9
AUR62024974 Chenopodium quinoa HOM05D000034 ORTHO05D000277 6.5e-08 62.0 202 25.7
AUR62028272 Chenopodium quinoa HOM05D000034 ORTHO05D000277 6.5e-08 62.0 202 25.7
Ah.01g007900 Amaranthus hybridus HOM05D000034 ORTHO05D000277 8.5e-08 61.6 80 36.2
DCAR_018120 Daucus carota HOM05D000034 ORTHO05D000277 8.5e-08 61.6 168 27.4
FAN12G2533 Fragaria x ananassa HOM05D000034 ORTHO05D000277 8.5e-08 61.6 126 30.2
PSO170G1448 Papaver somniferum HOM05D000034 ORTHO05D000037 8.5e-08 61.6 79 36.7
Prupe.7G013000 Prunus persica HOM05D008011 ORTHO05D000277 8.5e-08 61.6 144 29.9
Atru.chr6.37 Acer truncatum HOM05D000034 ORTHO05D000037 1.1e-07 61.2 205 27.8
CSS0033072 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 1.1e-07 61.2 176 30.1
CSS0036595 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 1.1e-07 61.2 256 28.1
AUR62018157 Chenopodium quinoa HOM05D000034 ORTHO05D000277 1.1e-07 61.2 191 27.2
DCAR_008359 Daucus carota HOM05D000034 ORTHO05D000277 1.1e-07 61.2 223 29.1
FvH4_5g01520 Fragaria vesca HOM05D008011 ORTHO05D000277 1.1e-07 61.2 83 31.3
FAN18G3785 Fragaria x ananassa HOM05D008011 ORTHO05D000277 1.1e-07 61.2 83 31.3
Ah.06g189260 Amaranthus hybridus HOM05D000034 ORTHO05D000277 1.4e-07 60.8 80 35.0
Ah.06g191350 Amaranthus hybridus HOM05D000034 ORTHO05D000277 1.4e-07 60.8 173 27.2
AUR62029884 Chenopodium quinoa HOM05D000034 ORTHO05D000037 1.4e-07 60.8 80 36.2
MELO3C034529.2 Cucumis melo HOM05D000034 ORTHO05D000037 1.4e-07 60.8 118 29.7
DCAR_003199 Daucus carota HOM05D000034 ORTHO05D000277 1.4e-07 60.8 223 28.3
Gorai.011G154200 Gossypium raimondii HOM05D000034 ORTHO05D000277 1.4e-07 60.8 122 29.5
PGR031G0842 Punica granatum HOM05D000034 ORTHO05D000277 1.4e-07 60.8 132 30.3
Thecc.01G257300 Theobroma cacao HOM05D000034 ORTHO05D000277 1.4e-07 60.8 152 30.3
DCAR_029042 Daucus carota HOM05D000034 ORTHO05D000277 1.9e-07 60.5 83 31.3
Hma1.2p1_0890F.1_g233020 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.9e-07 60.5 165 28.5
PGR102G0395 Punica granatum HOM05D000034 ORTHO05D000277 1.9e-07 60.5 79 35.4
arahy.Tifrunner.gnm1.ann1.E2D6CJ Arachis hypogaea HOM05D001651 ORTHO05D000277 2.5e-07 60.1 138 29.0
MELO3C028097.2 Cucumis melo HOM05D001651 ORTHO05D000277 2.5e-07 60.1 83 33.7
MELO3C032148.2 Cucumis melo HOM05D001651 ORTHO05D000277 2.5e-07 60.1 82 34.1
Gorai.006G053700 Gossypium raimondii HOM05D000034 ORTHO05D000277 2.5e-07 60.1 154 30.5
PGR102G2952 Punica granatum HOM05D000034 ORTHO05D000277 2.5e-07 60.1 182 26.4
RcHm_v2.0_Chr6g0284621 Rosa chinensis HOM05D000034 ORTHO05D000277 2.5e-07 60.1 223 26.0
arahy.Tifrunner.gnm1.ann1.3RQC98 Arachis hypogaea HOM05D001651 ORTHO05D000277 3.2e-07 59.7 138 29.0
arahy.Tifrunner.gnm1.ann1.4HXN36 Arachis hypogaea HOM05D001651 ORTHO05D000277 3.2e-07 59.7 138 29.0
arahy.Tifrunner.gnm1.ann1.VKU54N Arachis hypogaea HOM05D001651 ORTHO05D000277 3.2e-07 59.7 138 29.0
Ciclev10024558m.g Citrus clementina HOM05D000034 ORTHO05D000277 3.2e-07 59.7 99 32.3
Gorai.009G418500 Gossypium raimondii HOM05D000034 ORTHO05D000277 3.2e-07 59.7 154 30.5
EL10Ac3g06454 Beta vulgaris HOM05D000034 ORTHO05D000277 4.2e-07 59.3 171 25.7
CSS0015669 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 4.2e-07 59.3 176 29.5
CSS0024362 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 4.2e-07 59.3 176 29.5
vmacro02413 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 4.2e-07 59.3 140 32.9
AUR62007737 Chenopodium quinoa HOM05D000034 ORTHO05D000277 5.5e-07 58.9 175 28.0
arahy.Tifrunner.gnm1.ann1.LUU7A8 Arachis hypogaea HOM05D001651 ORTHO05D000277 7.2e-07 58.5 138 28.3
EL10Ac6g15045 Beta vulgaris HOM05D000034 ORTHO05D000277 7.2e-07 58.5 82 30.5
CSS0031455 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 7.2e-07 58.5 83 38.6
AUR62037513 Chenopodium quinoa HOM05D000034 ORTHO05D000277 7.2e-07 58.5 210 25.2
AUR62039697 Chenopodium quinoa HOM05D000034 ORTHO05D000277 7.2e-07 58.5 112 31.2
Dinv32704 Davidia involucrata HOM05D000034 ORTHO05D000277 7.2e-07 58.5 97 33.0
PGR042G3686 Punica granatum HOM05D000034 ORTHO05D000277 7.2e-07 58.5 151 28.5
GSVIVG01022336001 Vitis vinifera HOM05D000034 ORTHO05D000277 7.2e-07 58.5 80 35.0
Ah.00g001310 Amaranthus hybridus HOM05D000034 ORTHO05D000277 9.3e-07 58.2 172 26.7
Ah.15g094850 Amaranthus hybridus HOM05D000034 ORTHO05D000277 9.3e-07 58.2 172 26.7
AUR62020769 Chenopodium quinoa HOM05D000034 ORTHO05D000277 9.3e-07 58.2 210 25.2
Ciclev10023828m.g Citrus clementina HOM05D000034 ORTHO05D000277 9.3e-07 58.2 127 28.3
MELO3C028435.2 Cucumis melo HOM05D001651 ORTHO05D000277 9.3e-07 58.2 81 33.3
MELO3C035642.2 Cucumis melo HOM05D001651 ORTHO05D000277 9.3e-07 58.2 180 27.8
Hma1.2p1_0896F.1_g233910 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 9.3e-07 58.2 194 27.3
CSS0010302 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 1.2e-06 57.8 176 29.5
AUR62044078 Chenopodium quinoa HOM05D000034 ORTHO05D000037 1.2e-06 57.8 146 37.0
DCAR_023746 Daucus carota HOM05D000034 ORTHO05D000277 1.2e-06 57.8 175 26.3
FAN04G0445 Fragaria x ananassa HOM05D008011 ORTHO05D000277 1.2e-06 57.8 120 33.3
Ah.08g223740 Amaranthus hybridus HOM05D000034 ORTHO05D000277 1.6e-06 57.4 176 26.1
arahy.Tifrunner.gnm1.ann1.7ADW8G Arachis hypogaea HOM05D001651 ORTHO05D000277 1.6e-06 57.4 83 36.1
arahy.Tifrunner.gnm1.ann1.Q82TWL Arachis hypogaea HOM05D001651 ORTHO05D000277 1.6e-06 57.4 138 28.3
CSS0016960 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 1.6e-06 57.4 83 37.3
DCAR_009785 Daucus carota HOM05D001651 ORTHO05D000277 1.6e-06 57.4 190 28.4
DCAR_011895 Daucus carota HOM05D000034 ORTHO05D000277 1.6e-06 57.4 172 32.0
DCAR_015799 Daucus carota HOM05D001651 ORTHO05D000277 1.6e-06 57.4 190 28.4
ECA236G4617 Erigeron canadensis HOM05D000034 ORTHO05D000037 1.6e-06 57.4 144 31.2
PSO063G6367 Papaver somniferum HOM05D000034 ORTHO05D000277 1.6e-06 57.4 171 26.9
PGR044G2465 Punica granatum HOM05D000034 ORTHO05D000277 1.6e-06 57.4 188 27.1
vmacro08585 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.6e-06 57.4 150 30.7
vmacro15511 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 1.6e-06 57.4 161 29.8
AUR62008661 Chenopodium quinoa HOM05D000034 ORTHO05D000277 2.1e-06 57.0 80 36.2
MELO3C032644.2 Cucumis melo HOM05D001651 ORTHO05D000277 2.1e-06 57.0 158 27.8
vmacro07109 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 2.1e-06 57.0 81 35.8
arahy.Tifrunner.gnm1.ann1.ZKDC23 Arachis hypogaea HOM05D001651 ORTHO05D000277 2.7e-06 56.6 138 28.3
EL10Ac8g19731 Beta vulgaris HOM05D000034 ORTHO05D000277 2.7e-06 56.6 196 27.0
MELO3C033795.2 Cucumis melo HOM05D001651 ORTHO05D000277 2.7e-06 56.6 128 26.6
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 2.7e-06 56.6 123 28.5
EL10Ac3g06576 Beta vulgaris HOM05D000034 ORTHO05D000037 3.6e-06 56.2 109 31.2
CSS0008044 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 3.6e-06 56.2 83 36.1
MELO3C032240.2 Cucumis melo HOM05D001651 ORTHO05D000277 3.6e-06 56.2 169 25.4
Gohir.A07G187500 Gossypium hirsutum HOM05D000034 ORTHO05D000277 3.6e-06 56.2 123 30.1
AUR62010532 Chenopodium quinoa HOM05D000034 ORTHO05D000277 4.6e-06 55.8 109 30.3
MELO3C029869.2 Cucumis melo HOM05D001651 ORTHO05D000277 4.6e-06 55.8 80 33.8
MELO3C035564.2 Cucumis melo HOM05D001651 ORTHO05D000277 4.6e-06 55.8 143 27.3
FAN13G0966 Fragaria x ananassa HOM05D008011 ORTHO05D000277 4.6e-06 55.8 126 33.3
COL.COLO4_03888 Corchorus olitorius HOM05D000034 ORTHO05D000277 6.1e-06 55.5 248 25.8
MELO3C033417.2 Cucumis melo HOM05D001651 ORTHO05D009716 6.1e-06 55.5 169 26.0
COL.COLO4_21831 Corchorus olitorius HOM05D000034 ORTHO05D000277 7.9e-06 55.1 151 27.8
MELO3C033188.2 Cucumis melo HOM05D001651 ORTHO05D000277 7.9e-06 55.1 81 33.3
DCAR_018898 Daucus carota HOM05D001651 ORTHO05D000277 7.9e-06 55.1 185 27.6
vmacro07178 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 7.9e-06 55.1 81 35.8


User provided reference genes

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