Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g039920 Amaranthus hybridus HOM05D000011 ORTHO05D000157 5.7e-52 207.2 98 100.0
Ah.02g128860 Amaranthus hybridus HOM05D000011 ORTHO05D000018 3.8e-16 88.2 67 56.7
EL10Ac7g17091 Beta vulgaris HOM05D000011 ORTHO05D000018 3.1e-10 68.6 63 47.6
QL08p002832 Quercus lobata HOM05D000011 ORTHO05D000157 1.2e-09 66.6 67 41.8
AUR62028130 Chenopodium quinoa HOM05D000011 ORTHO05D000018 3.5e-09 65.1 63 52.4
AUR62005930 Chenopodium quinoa HOM05D000011 ORTHO05D000018 4.5e-09 64.7 63 46.0
AUR62005933 Chenopodium quinoa HOM05D000011 ORTHO05D000018 4.5e-09 64.7 63 46.0
Rhsim02G0078800 Rhododendron simsii HOM05D000011 ORTHO05D000157 1.0e-08 63.5 70 35.7
Hund09761 Selenicereus undatus HOM05D000011 ORTHO05D000018 1.7e-08 62.8 67 43.3
Hund26723 Selenicereus undatus HOM05D000011 ORTHO05D000018 3.8e-08 61.6 67 41.8
Hund26724 Selenicereus undatus HOM05D000011 ORTHO05D000018 3.8e-08 61.6 67 41.8
Hund26725 Selenicereus undatus HOM05D000011 ORTHO05D000018 5.0e-08 61.2 67 41.8
Ah.03g148060 Amaranthus hybridus HOM05D000011 ORTHO05D000018 6.5e-08 60.8 61 41.0
BcaB07g29985 Brassica carinata HOM05D000011 ORTHO05D000018 8.5e-08 60.5 68 36.8
Cc06_g16160 Coffea canephora HOM05D000011 ORTHO05D000018 8.5e-08 60.5 67 37.3
Haze_05234 Corylus avellana HOM05D000011 ORTHO05D000157 1.1e-07 60.1 99 29.3
Gorai.007G333300 Gossypium raimondii HOM05D000011 ORTHO05D000018 1.5e-07 59.7 70 37.1
QL08p002431 Quercus lobata HOM05D000011 ORTHO05D000157 1.5e-07 59.7 68 36.8
MD00G1207800 Malus domestica HOM05D000011 ORTHO05D000157 1.9e-07 59.3 68 35.3
CARHR283710 Cardamine hirsuta HOM05D000011 ORTHO05D000018 2.5e-07 58.9 66 36.4
QL08p002710 Quercus lobata HOM05D000011 ORTHO05D000157 2.5e-07 58.9 58 39.7
QL08p003089 Quercus lobata HOM05D000011 ORTHO05D000157 3.2e-07 58.5 61 41.0
QL08p003162 Quercus lobata HOM05D000011 ORTHO05D000157 4.2e-07 58.2 61 39.3
A02p40360 Brassica napus HOM05D000011 ORTHO05D000018 5.5e-07 57.8 68 32.4
CARHR283900 Cardamine hirsuta HOM05D000011 ORTHO05D000018 5.5e-07 57.8 68 35.3
Cc06_g16200 Coffea canephora HOM05D000011 ORTHO05D000018 5.5e-07 57.8 67 37.3
Gohir.D11G302203 Gossypium hirsutum HOM05D000011 ORTHO05D000018 5.5e-07 57.8 70 35.7
MBI15_g47075_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 5.5e-07 57.8 77 32.5
FvH4_7g15240 Fragaria vesca HOM05D000011 ORTHO05D000018 9.4e-07 57.0 68 33.8
MBI15_g25907_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 9.4e-07 57.0 70 32.9
TPR.G5063 Trifolium pratense HOM05D000011 ORTHO05D000157 9.4e-07 57.0 70 38.6
Gorai.N010100 Gossypium raimondii HOM05D000011 ORTHO05D000018 1.2e-06 56.6 68 36.8
QL03p068927 Quercus lobata HOM05D000011 ORTHO05D000157 1.2e-06 56.6 70 34.3
Thecc.07G097400 Theobroma cacao HOM05D000011 ORTHO05D000018 1.2e-06 56.6 91 30.8
A02p40580 Brassica napus HOM05D000011 ORTHO05D000018 1.6e-06 56.2 68 30.9
Gohir.D11G307100 Gossypium hirsutum HOM05D000011 ORTHO05D000018 1.6e-06 56.2 68 36.8
MD06G1153100 Malus domestica HOM05D000011 ORTHO05D000157 1.6e-06 56.2 74 33.8
RhsimUnG0136900 Rhododendron simsii HOM05D000011 ORTHO05D000157 1.6e-06 56.2 74 32.4
Sc06g0007220 Simmondsia chinensis HOM05D000011 ORTHO05D000018 1.6e-06 56.2 65 36.9
Gohir.A11G286382 Gossypium hirsutum HOM05D000011 ORTHO05D000018 2.1e-06 55.8 68 38.2
Lj3P668T4 Lonicera japonica HOM05D000011 ORTHO05D000018 2.1e-06 55.8 61 42.6
PGR031G3654 Punica granatum HOM05D000011 ORTHO05D000157 2.1e-06 55.8 57 36.8
QL08p002938 Quercus lobata HOM05D000011 ORTHO05D000157 2.1e-06 55.8 61 37.7
Thecc.07G098100 Theobroma cacao HOM05D000011 ORTHO05D000018 2.1e-06 55.8 68 35.3
GSVIVG01012993001 Vitis vinifera HOM05D000011 ORTHO05D000157 2.1e-06 55.8 67 34.3
Cpa.g.sc9.308 Carica papaya HOM05D000011 ORTHO05D002639 2.7e-06 55.5 51 45.1
Eucgr.E01295 Eucalyptus grandis HOM05D000011 ORTHO05D000157 2.7e-06 55.5 65 33.8
Gohir.A11G290100 Gossypium hirsutum HOM05D000011 ORTHO05D000018 2.7e-06 55.5 68 38.2
Gorai.007G333200 Gossypium raimondii HOM05D000011 ORTHO05D000018 2.7e-06 55.5 68 35.3
Potri.005G035400 Populus trichocarpa HOM05D000011 ORTHO05D000157 2.7e-06 55.5 66 31.8
CANSAT11G0333 Cannabis sativa HOM05D000011 ORTHO05D000157 3.6e-06 55.1 70 32.9
CARHR283760 Cardamine hirsuta HOM05D000011 ORTHO05D000018 3.6e-06 55.1 68 33.8
DCAR_004976 Daucus carota HOM05D000011 ORTHO05D000018 3.6e-06 55.1 58 41.4
FAN01G1112 Fragaria x ananassa HOM05D000011 ORTHO05D000018 3.6e-06 55.1 67 31.3
Gohir.A11G286741 Gossypium hirsutum HOM05D000011 ORTHO05D000018 3.6e-06 55.1 68 38.2
Gohir.D11G302300 Gossypium hirsutum HOM05D000011 ORTHO05D000018 3.6e-06 55.1 70 35.7
Oeu008532.1 Olea europaea HOM05D000011 ORTHO05D000157 3.6e-06 55.1 66 31.8
A02p40420 Brassica napus HOM05D000011 ORTHO05D000018 4.7e-06 54.7 68 32.4
Cfa013237 Carpinus fangiana HOM05D000011 ORTHO05D000157 4.7e-06 54.7 61 36.1
Duzib213G0267 Durio zibethinus HOM05D000011 ORTHO05D000018 4.7e-06 54.7 88 29.5
Eucgr.E01296 Eucalyptus grandis HOM05D000011 ORTHO05D000157 4.7e-06 54.7 55 38.2
Hma1.2p1_0112F.1_g054350 Hydrangea macrophylla HOM05D000011 ORTHO05D000018 4.7e-06 54.7 65 38.5
QL08p002754 Quercus lobata HOM05D000011 ORTHO05D000157 4.7e-06 54.7 58 37.9
Rhsim02G0077900 Rhododendron simsii HOM05D000011 ORTHO05D000157 4.7e-06 54.7 70 32.9
Rhsim02G0078400 Rhododendron simsii HOM05D000011 ORTHO05D000157 4.7e-06 54.7 70 30.0
BcaC04g22151 Brassica carinata HOM05D000011 ORTHO05D000018 6.1e-06 54.3 52 40.4
C09p22790 Brassica napus HOM05D000011 ORTHO05D000018 6.1e-06 54.3 52 40.4
BolC9t55196H Brassica oleracea HOM05D000011 ORTHO05D000018 6.1e-06 54.3 52 40.4
CANSAT11G1941 Cannabis sativa HOM05D000011 ORTHO05D000157 6.1e-06 54.3 65 33.8
COL.COLO4_17624 Corchorus olitorius HOM05D000011 ORTHO05D000018 6.1e-06 54.3 68 33.8
Eucgr.E01292 Eucalyptus grandis HOM05D000011 ORTHO05D000157 6.1e-06 54.3 55 38.2
Gorai.007G333800 Gossypium raimondii HOM05D000011 ORTHO05D000018 6.1e-06 54.3 68 33.8
RcHm_v2.0_Chr6g0274421 Rosa chinensis HOM05D000011 ORTHO05D000157 6.1e-06 54.3 68 33.8
GSVIVG01037476001 Vitis vinifera HOM05D000011 ORTHO05D000157 6.1e-06 54.3 68 30.9
Cfa001145 Carpinus fangiana HOM05D000011 ORTHO05D000157 8.0e-06 53.9 61 34.4
Haze_05501 Corylus avellana HOM05D000011 ORTHO05D000157 8.0e-06 53.9 61 37.7
DCAR_004987 Daucus carota HOM05D000011 ORTHO05D000018 8.0e-06 53.9 58 37.9
Duzib170G0584 Durio zibethinus HOM05D000011 ORTHO05D000018 8.0e-06 53.9 68 35.3
Gohir.D11G298950 Gossypium hirsutum HOM05D000011 ORTHO05D000018 8.0e-06 53.9 68 35.3
Gohir.D11G299050 Gossypium hirsutum HOM05D000011 ORTHO05D000018 8.0e-06 53.9 52 42.3
Gohir.D11G299300 Gossypium hirsutum HOM05D000011 ORTHO05D000018 8.0e-06 53.9 68 35.3
Gohir.D11G299500 Gossypium hirsutum HOM05D000011 ORTHO05D000018 8.0e-06 53.9 52 42.3
Gorai.007G324700 Gossypium raimondii HOM05D000011 ORTHO05D000018 8.0e-06 53.9 68 35.3
MD06G1152500 Malus domestica HOM05D000011 ORTHO05D000157 8.0e-06 53.9 68 35.3
Medtr1g016210 Medicago truncatula HOM05D000011 ORTHO05D000157 8.0e-06 53.9 70 31.4
Medtr1g016217 Medicago truncatula HOM05D000011 ORTHO05D000157 8.0e-06 53.9 70 31.4
Prupe.8G008900 Prunus persica HOM05D000011 ORTHO05D000157 8.0e-06 53.9 65 36.9
QL08p002807 Quercus lobata HOM05D000011 ORTHO05D000157 8.0e-06 53.9 58 37.9
Thecc.07G097900 Theobroma cacao HOM05D000011 ORTHO05D000018 8.0e-06 53.9 68 33.8


User provided reference genes

Program Settings