Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g039750 Amaranthus hybridus HOM05D006392 ORTHO05D008010 3.5e-82 308.1 146 100.0
EL10Ac1g02188 Beta vulgaris HOM05D006392 ORTHO05D008010 3.4e-69 265.0 146 82.2
AUR62041903 Chenopodium quinoa HOM05D006392 ORTHO05D008010 2.2e-68 262.3 146 83.6
AUR62033899 Chenopodium quinoa HOM05D006392 ORTHO05D008010 1.4e-67 259.6 146 82.9
Hund05186 Selenicereus undatus HOM05D006392 ORTHO05D008010 2.9e-60 235.3 148 73.0
Sc02g0008600 Simmondsia chinensis HOM05D006392 ORTHO05D008010 1.6e-55 219.5 151 70.9
Rhsim06G0021200 Rhododendron simsii HOM05D006392 ORTHO05D008010 1.1e-51 206.8 148 65.5
Actinidia16990 Actinidia chinensis HOM05D006392 ORTHO05D004187 1.4e-51 206.5 148 64.2
vmacro07583 Vaccinium macrocarpon HOM05D006392 ORTHO05D008010 1.9e-51 206.1 152 67.1
CAN.G311.35 Capsicum annuum HOM05D006392 ORTHO05D008010 5.5e-51 204.5 148 65.5
Lsat_1_v5_gn_8_30701 Lactuca sativa HOM05D006392 ORTHO05D008010 5.5e-51 204.5 146 63.7
Hma1.2p1_0638F.1_g193900 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 7.1e-51 204.1 148 65.5
Hma1.2p1_0638F.1_g193910 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 7.1e-51 204.1 148 65.5
Lj4C23T1 Lonicera japonica HOM05D006392 ORTHO05D008010 6.0e-50 201.1 149 65.1
GSVIVG01009916001 Vitis vinifera HOM05D006392 ORTHO05D008010 6.0e-50 201.1 148 62.8
Oeu014179.1 Olea europaea HOM05D006392 ORTHO05D008010 1.3e-49 199.9 148 62.2
MSTRG.1188 Avicennia marina HOM05D006392 ORTHO05D008010 1.8e-49 199.5 146 60.3
Dinv31849 Davidia involucrata HOM05D006392 ORTHO05D008010 1.8e-49 199.5 148 62.8
HanXRQChr13g0387101 Helianthus annuus HOM05D006392 ORTHO05D008010 1.8e-49 199.5 146 63.7
Nitab4.5_0013390g0010 Nicotiana tabacum HOM05D006392 ORTHO05D008010 1.8e-49 199.5 148 62.8
ECA233G3412 Erigeron canadensis HOM05D006392 ORTHO05D008010 8.7e-49 197.2 146 60.3
CSS0006206 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 1.1e-48 196.8 148 62.8
CSS0012189 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 1.1e-48 196.8 148 62.8
Migut.C00843 Erythranthe guttata HOM05D006392 ORTHO05D008010 3.3e-48 195.3 146 60.3
SalBow7G2189 Salvia bowleyana HOM05D006392 ORTHO05D008010 4.3e-48 194.9 154 59.7
Actinidia21265 Actinidia chinensis HOM05D006392 ORTHO05D008010 7.4e-48 194.1 148 62.2
Nn1g05904 Nelumbo nucifera HOM05D006392 ORTHO05D008010 7.4e-48 194.1 149 59.7
Sopen04g035110 Solanum pennellii HOM05D006392 ORTHO05D008010 2.8e-47 192.2 148 61.5
TAR628G0005 Trochodendron aralioides HOM05D006392 ORTHO05D008010 2.8e-47 192.2 149 61.7
PGSC0003DMG400009939 Solanum tuberosum HOM05D006392 ORTHO05D008010 4.8e-47 191.4 148 62.2
Solyc04g081500.3 Solanum lycopersicum HOM05D006392 ORTHO05D008010 6.2e-47 191.0 148 60.8
QL02p011683 Quercus lobata HOM05D006392 ORTHO05D008010 1.1e-46 190.3 151 62.3
DCAR_023015 Daucus carota HOM05D006392 ORTHO05D008010 1.8e-46 189.5 148 60.1
Atru.chr13.285 Acer truncatum HOM05D006392 ORTHO05D008010 9.0e-46 187.2 150 59.3
CANSAT25G2040 Cannabis sativa HOM05D006392 ORTHO05D008010 1.2e-45 186.8 151 61.6
Potri.002G021700 Populus trichocarpa HOM05D006392 ORTHO05D008010 1.5e-45 186.4 150 58.7
Sabra02G0018100 Salix brachista HOM05D006392 ORTHO05D008010 1.5e-45 186.4 150 58.7
Manes.05G146900 Manihot esculenta HOM05D006392 ORTHO05D008010 2.0e-45 186.0 150 60.7
unitig_32.g11136 Utricularia gibba HOM05D006392 ORTHO05D008010 2.0e-45 186.0 146 59.6
MBI05_g07507_MAGBIO Magnolia biondii HOM05D006392 ORTHO05D008010 2.6e-45 185.7 148 58.1
Cfa013957 Carpinus fangiana HOM05D006392 ORTHO05D008010 5.8e-45 184.5 149 62.4
CiPaw.07G149200 Carya illinoinensis HOM05D006392 ORTHO05D008010 5.8e-45 184.5 149 60.4
Aqoxy6G00284_Aqoxy6G00285 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 1.0e-44 183.7 143 62.2
CsaV3_3G045910 Cucumis sativus L. HOM05D006392 ORTHO05D008010 1.3e-44 183.3 151 57.6
Potri.005G240000 Populus trichocarpa HOM05D006392 ORTHO05D008010 2.2e-44 182.6 150 58.0
TWI56G0581 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 4.9e-44 181.4 151 58.9
Haze_22639 Corylus avellana HOM05D006392 ORTHO05D008010 6.5e-44 181.0 149 60.4
TWI36G0533 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 6.5e-44 181.0 147 58.5
PSO675G2043 Papaver somniferum HOM05D006392 ORTHO05D008010 1.9e-43 179.5 143 58.7
Sed0018359 Sechium edule HOM05D006392 ORTHO05D008010 3.2e-43 178.7 149 57.0
Cc10_g01620 Coffea canephora HOM05D006392 ORTHO05D008010 5.5e-43 177.9 146 56.8
PSO541G2958 Papaver somniferum HOM05D006392 ORTHO05D008010 5.5e-43 177.9 143 58.0
MD08G1012700 Malus domestica HOM05D006392 ORTHO05D008010 7.1e-43 177.6 151 56.3
MD15G1011700 Malus domestica HOM05D006392 ORTHO05D008010 9.3e-43 177.2 151 55.6
Lj6g0002207 Lotus japonicus HOM05D006392 ORTHO05D008010 1.2e-42 176.8 149 58.4
Cpa.g.sc26.51 Carica papaya HOM05D006392 ORTHO05D008010 1.6e-42 176.4 151 55.0
PGR083G2660 Punica granatum HOM05D006392 ORTHO05D008010 2.1e-42 176.0 151 57.0
Prupe.1G364700 Prunus persica HOM05D006392 ORTHO05D008010 3.5e-42 175.3 152 56.6
CDE04G0374 Ceratophyllum demersum HOM05D006392 ORTHO05D008010 4.6e-42 174.9 147 55.1
Phvul.005G022200 Phaseolus vulgaris HOM05D006392 ORTHO05D008010 4.6e-42 174.9 145 61.4
Psat1g169520 Pisum sativum HOM05D006392 ORTHO05D008010 4.6e-42 174.9 146 58.9
Sabra05G0185500 Salix brachista HOM05D006392 ORTHO05D008010 6.0e-42 174.5 150 56.7
Glyma.09G103100 Glycine max HOM05D006392 ORTHO05D008010 7.9e-42 174.1 145 59.3
Gohir.D01G097700 Gossypium hirsutum HOM05D006392 ORTHO05D008010 7.9e-42 174.1 150 56.7
Gorai.002G123300 Gossypium raimondii HOM05D006392 ORTHO05D008010 7.9e-42 174.1 150 56.7
RcHm_v2.0_Chr6g0302911 Rosa chinensis HOM05D006392 ORTHO05D008010 7.9e-42 174.1 148 56.8
Ciclev10001496m.g Citrus clementina HOM05D006392 ORTHO05D008010 1.0e-41 173.7 150 56.7
Gohir.A01G111000 Gossypium hirsutum HOM05D006392 ORTHO05D008010 1.0e-41 173.7 150 56.7
Thecc.08G045200 Theobroma cacao HOM05D006392 ORTHO05D008010 1.0e-41 173.7 152 55.9
Lalb_Chr20g0119891 Lupinus albus HOM05D006392 ORTHO05D008010 1.3e-41 173.3 145 60.7
Duzib093G0848 Durio zibethinus HOM05D006392 ORTHO05D008010 6.7e-41 171.0 152 54.6
COL.COLO4_26140 Corchorus olitorius HOM05D006392 ORTHO05D008010 1.1e-40 170.2 151 53.0
Duzib116G0836 Durio zibethinus HOM05D006392 ORTHO05D008010 1.1e-40 170.2 153 54.2
Ca_00791_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 1.5e-40 169.9 144 56.2
Eucgr.F01664 Eucalyptus grandis HOM05D006392 ORTHO05D008010 1.5e-40 169.9 151 54.3
Eucgr.F02661 Eucalyptus grandis HOM05D006392 ORTHO05D008010 1.5e-40 169.9 151 54.3
Medtr2g029040 Medicago truncatula HOM05D006392 ORTHO05D008010 9.7e-40 167.2 150 58.0
ATR0810G120 Amborella trichopoda HOM05D006392 ORTHO05D008010 1.6e-39 166.4 142 55.6
FAN20G2474 Fragaria x ananassa HOM05D006392 ORTHO05D008010 2.8e-39 165.6 148 55.4
THA.LOC104809190 Tarenaya hassleriana HOM05D006392 ORTHO05D008010 2.8e-39 165.6 150 55.3
HPP92_024091 Vanilla planifolia HOM05D006392 ORTHO05D008010 3.7e-39 165.2 148 53.4
FvH4_2g38390 Fragaria vesca HOM05D006392 ORTHO05D008010 6.3e-39 164.5 148 55.4
FAN27G1073 Fragaria x ananassa HOM05D006392 ORTHO05D008010 6.3e-39 164.5 148 56.1
AL8G18870 Arabidopsis lyrata HOM05D006392 ORTHO05D008010 1.4e-38 163.3 150 52.0
Sp7g07860 Schrenkiella parvula HOM05D006392 ORTHO05D008010 1.4e-38 163.3 151 54.3
FAN15G0959 Fragaria x ananassa HOM05D006392 ORTHO05D008010 1.8e-38 162.9 148 54.1
Peaxi162Scf00438g00835 Petunia axillaris HOM05D006392 ORTHO05D008010 5.3e-38 161.4 148 56.1
Ca_07152_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 1.5e-37 159.8 147 53.7
SEGI_16132 Sequoiadendron giganteum HOM05D006392 ORTHO05D008010 2.6e-37 159.1 146 51.4
Carub.0008s0658 Capsella rubella HOM05D006392 ORTHO05D008010 3.4e-37 158.7 153 51.6
A06p48320 Brassica napus HOM05D006392 ORTHO05D008010 1.3e-36 156.8 148 53.4
BraA06t27702Z Brassica rapa HOM05D006392 ORTHO05D008010 1.3e-36 156.8 148 53.4
arahy.Tifrunner.gnm1.ann1.GAE5DS Arachis hypogaea HOM05D006392 ORTHO05D008010 5.0e-36 154.8 121 63.6
arahy.Tifrunner.gnm1.ann1.8AJY4P Arachis hypogaea HOM05D006392 ORTHO05D008010 6.5e-36 154.5 121 62.8
AT5G42470 Arabidopsis thaliana HOM05D006392 ORTHO05D008010 1.4e-35 153.3 152 50.0
BcaC02g10765 Brassica carinata HOM05D006392 ORTHO05D008010 1.4e-35 153.3 148 52.7
BcaC06g31757 Brassica carinata HOM05D006392 ORTHO05D008010 1.4e-35 153.3 148 52.7
SGA_v2.0_scaffold11G05922 Striga asiatica HOM05D006392 ORTHO05D008010 5.5e-35 151.4 115 60.0
Thhalv10003229m.g Eutrema salsugineum HOM05D006392 ORTHO05D008010 2.1e-34 149.4 151 51.0
Os06g0715600 Oryza sativa ssp. japonica HOM05D006392 ORTHO05D008010 2.7e-34 149.1 147 46.9
C04p25370 Brassica napus HOM05D006392 ORTHO05D008010 3.6e-34 148.7 149 52.3
BolC4t24044H Brassica oleracea HOM05D006392 ORTHO05D008010 3.6e-34 148.7 149 52.3
VMungo1080G0965 Vigna mungo HOM05D006392 ORTHO05D008010 1.0e-33 147.1 122 62.3
Zm00001eb228060 Zea mays HOM05D006392 ORTHO05D008010 2.5e-32 142.5 139 49.6
RcHm_v2.0_Chr4g0398171 Rosa chinensis HOM05D006392 ORTHO05D008010 4.8e-31 138.3 108 59.3
Pp3c4_9730 Physcomitrium patens HOM05D006392 ORTHO05D008010 6.3e-31 137.9 137 47.4
Mapoly0064s0103 Marchantia polymorpha HOM05D006392 ORTHO05D008010 2.0e-29 132.9 151 44.4
MELO3C030484.2 Cucumis melo HOM05D006392 ORTHO05D008010 7.7e-29 131.0 165 43.6
AagrBONN_evm.TU.Sc2ySwM_117.3435 Anthoceros agrestis HOM05D006392 ORTHO05D008010 2.9e-28 129.0 140 45.7
TPR.G29580 Trifolium pratense HOM05D006392 ORTHO05D008010 6.5e-28 127.9 113 57.5
Aa31LG9G12590 Aethionema arabicum HOM05D006392 ORTHO05D008010 6.1e-26 121.3 124 46.8
CBR_g23034 Chara braunii HOM05D006392 ORTHO05D008010 2.0e-21 106.3 141 39.0
SMO196G0156 Selaginella moellendorffii HOM05D006392 ORTHO05D008010 1.7e-20 103.2 141 38.3
Actinidia35835 Actinidia chinensis HOM05D006392 ORTHO05D008010 2.6e-16 89.4 61 68.9
Actinidia27159 Actinidia chinensis HOM05D006392 ORTHO05D008010 1.4e-14 83.6 121 40.5
MD11G1014100 Malus domestica HOM05D006392 ORTHO05D008010 2.6e-08 62.8 53 52.8


User provided reference genes

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