Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 6.5e-280 966.8 519 100.0
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 3.4e-164 582.4 512 64.8
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 6.7e-152 541.6 524 60.7
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 2.7e-113 413.3 521 50.7
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.1e-109 401.4 468 52.6
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 8.4e-62 242.3 258 53.1
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 2.9e-46 190.7 318 38.1
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.8e-40 171.4 278 37.1
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 4.5e-39 166.8 364 34.6
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 7.6e-39 166.0 303 33.7
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 2.2e-38 164.5 271 37.6
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 2.9e-38 164.1 361 32.7
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 2.5e-37 161.0 279 35.8
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.5e-37 161.0 311 35.4
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 2.1e-36 157.9 350 32.6
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 2.7e-36 157.5 322 34.5
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.7e-36 157.5 332 34.0
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 7.9e-36 156.0 297 34.7
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.0e-35 155.6 270 37.8
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 3.9e-35 153.7 275 36.7
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 8.7e-35 152.5 326 33.4
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 1.1e-34 152.1 285 37.5
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 1.5e-34 151.8 295 33.6
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 2.5e-34 151.0 317 33.8
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 3.3e-34 150.6 277 35.4
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 7.4e-34 149.4 267 35.6
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 9.7e-34 149.1 286 34.3
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.6e-33 148.3 269 36.4
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 3.7e-33 147.1 275 35.3
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.7e-33 147.1 282 33.7
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 3.7e-33 147.1 282 33.7
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 3.7e-33 147.1 335 33.1
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 4.8e-33 146.7 381 28.9
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 6.3e-33 146.4 327 33.0
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 8.2e-33 146.0 353 32.6
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.4e-32 145.2 328 31.7
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.4e-32 145.2 317 31.2
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 1.4e-32 145.2 284 34.2
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.8e-32 144.8 326 32.2
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.8e-32 144.8 271 34.3
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 2.4e-32 144.4 244 37.3
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 2.4e-32 144.4 278 33.8
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 3.1e-32 144.1 283 32.5
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 3.1e-32 144.1 239 37.7
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.1e-32 144.1 269 35.7
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 4.1e-32 143.7 348 31.9
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 4.1e-32 143.7 352 31.0
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 9.1e-32 142.5 348 31.3
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.2e-31 142.1 283 32.9
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.5e-31 141.7 283 33.6
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 1.5e-31 141.7 335 32.2
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.4e-31 140.6 353 29.7
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 3.4e-31 140.6 291 34.0
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 4.5e-31 140.2 508 27.0
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 4.5e-31 140.2 268 36.6
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 5.9e-31 139.8 358 29.1
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 1.0e-30 139.0 338 31.4
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.0e-30 139.0 269 34.9
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.0e-30 139.0 518 25.5
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 1.0e-30 139.0 267 33.7
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 1.3e-30 138.7 270 34.8
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 2.9e-30 137.5 220 38.2
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 5.0e-30 136.7 360 30.6
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 6.5e-30 136.3 271 31.4
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 8.5e-30 136.0 239 35.1
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 8.5e-30 136.0 233 36.5
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.1e-29 135.6 277 33.2
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 3.2e-29 134.0 245 35.1
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 3.2e-29 134.0 277 32.5
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 4.2e-29 133.7 286 33.6
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 7.2e-29 132.9 284 34.2
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 7.2e-29 132.9 349 28.9
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 7.2e-29 132.9 244 34.4
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 1.6e-28 131.7 242 35.5
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 2.1e-28 131.3 362 27.3
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 3.6e-28 130.6 348 29.6
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 4.6e-28 130.2 360 30.3
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 4.6e-28 130.2 245 33.9
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 1.0e-27 129.0 242 35.1
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 2.3e-27 127.9 292 32.2
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 2.3e-27 127.9 313 30.0
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 3.0e-27 127.5 267 32.2
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 5.1e-27 126.7 267 33.7
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 1.1e-26 125.6 276 31.9
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 2.6e-26 124.4 286 30.4
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 1.7e-25 121.7 251 32.7
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 1.7e-25 121.7 365 29.6
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 2.2e-25 121.3 227 34.4
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 1.1e-24 119.0 244 29.9
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.4e-24 118.6 304 28.9
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 1.4e-24 118.6 255 32.5
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 1.8e-24 118.2 349 28.7
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 5.3e-24 116.7 259 29.3
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 1.2e-23 115.5 329 29.2
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 1.5e-23 115.2 251 31.5
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 2.6e-23 114.4 250 31.6
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 3.4e-23 114.0 327 28.1
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 5.9e-23 113.2 233 33.9
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 7.7e-23 112.8 285 31.6
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 2.9e-22 110.9 277 31.0
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 6.5e-22 109.8 315 30.2
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 6.5e-22 109.8 308 25.6
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 1.9e-21 108.2 240 30.8
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 9.4e-21 105.9 289 28.7
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 1.0e-19 102.4 250 30.0
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 1.8e-19 101.7 242 31.4
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 2.3e-19 101.3 246 30.1
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 3.0e-19 100.9 338 25.4
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 3.9e-19 100.5 242 31.0
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 5.2e-19 100.1 242 31.0
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 8.8e-19 99.4 257 28.8
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.0e-18 98.2 189 36.5
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 4.4e-18 97.1 316 28.2
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 1.3e-17 95.5 230 27.8
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 2.2e-17 94.7 359 25.9
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 2.0e-15 88.2 505 22.8
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 1.3e-14 85.5 330 26.1
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 1.7e-14 85.1 108 41.7
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 6.5e-14 83.2 268 28.4
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 7.2e-13 79.7 337 28.2
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 2.7e-12 77.8 177 31.6
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 4.7e-12 77.0 324 25.3
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.4e-11 75.5 213 28.6
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 2.6e-10 71.2 268 28.4
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 9.7e-10 69.3 186 33.3
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 2.2e-09 68.2 341 22.9
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 2.8e-09 67.8 125 36.0
Aqoxy2G01737 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 2.4e-08 64.7 239 26.4
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 3.1e-08 64.3 223 26.5
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 4.1e-08 63.9 221 25.8
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 7.0e-08 63.2 132 31.8
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 2.0e-07 61.6 96 34.4
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 2.0e-07 61.6 114 36.0
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 2.7e-07 61.2 221 24.0


User provided reference genes

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