Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g039500 Amaranthus hybridus HOM05D007547 ORTHO05D009590 1.7e-38 162.2 81 100.0
EL10Ac1g02249 Beta vulgaris HOM05D007547 ORTHO05D009590 4.5e-31 137.5 83 85.5
AUR62035430 Chenopodium quinoa HOM05D007547 ORTHO05D009590 1.9e-29 132.1 83 83.1
AUR62035713 Chenopodium quinoa HOM05D007547 ORTHO05D009590 3.3e-29 131.3 83 83.1
Solyc03g046380.1 Solanum lycopersicum HOM05D007547 ORTHO05D009590 3.4e-26 121.3 80 77.5
Sopen03g010530 Solanum pennellii HOM05D007547 ORTHO05D009590 7.5e-26 120.2 80 76.2
Sc15g0005120 Simmondsia chinensis HOM05D007547 ORTHO05D009590 2.9e-25 118.2 83 77.1
PGSC0003DMG400018766 Solanum tuberosum HOM05D007547 ORTHO05D009590 8.3e-25 116.7 80 75.0
PGR031G1160 Punica granatum HOM05D007547 ORTHO05D009590 1.2e-23 112.8 81 70.4
MELO3C026033.2 Cucumis melo HOM05D007547 ORTHO05D009590 1.6e-23 112.5 81 77.8
ClCG04G006620 Citrullus lanatus HOM05D007547 ORTHO05D009590 2.0e-23 112.1 81 77.8
Peaxi162Scf00479g00092 Petunia axillaris HOM05D007547 ORTHO05D009590 3.5e-23 111.3 81 71.6
Migut.M01490 Erythranthe guttata HOM05D007547 ORTHO05D009590 4.6e-23 110.9 81 72.8
MD05G1241500 Malus domestica HOM05D007547 ORTHO05D009590 4.6e-23 110.9 81 74.1
Nitab4.5_0003384g0040 Nicotiana tabacum HOM05D007547 ORTHO05D009590 4.6e-23 110.9 80 73.8
Sed0025991 Sechium edule HOM05D007547 ORTHO05D009590 7.8e-23 110.2 81 76.5
Atru.chr1.6 Acer truncatum HOM05D007547 ORTHO05D009590 1.7e-22 109.0 81 70.4
Lj3g0009805 Lotus japonicus HOM05D007547 ORTHO05D009590 3.9e-22 107.8 81 72.8
Nn1g09847 Nelumbo nucifera HOM05D007547 ORTHO05D009590 3.9e-22 107.8 80 71.2
TPR.G3626 Trifolium pratense HOM05D007547 ORTHO05D009590 8.6e-22 106.7 81 70.4
AT2G21820 Arabidopsis thaliana HOM05D007547 ORTHO05D009590 1.1e-21 106.3 81 71.6
Phvul.005G044200 Phaseolus vulgaris HOM05D007547 ORTHO05D009590 1.1e-21 106.3 81 71.6
SalBow8G1259 Salvia bowleyana HOM05D007547 ORTHO05D009590 1.9e-21 105.5 84 70.2
Glyma.08G160800 Glycine max HOM05D007547 ORTHO05D009590 2.5e-21 105.1 81 72.8
Sp5g34290 Schrenkiella parvula HOM05D007547 ORTHO05D009590 2.5e-21 105.1 80 71.2
AL4G11130 Arabidopsis lyrata HOM05D007547 ORTHO05D009590 3.3e-21 104.8 81 70.4
CAN.G497.31 Capsicum annuum HOM05D007547 ORTHO05D009590 3.3e-21 104.8 82 72.0
CARHR072880 Cardamine hirsuta HOM05D007547 ORTHO05D009590 3.3e-21 104.8 81 70.4
Ca_03316_v3 Cicer arietinum L. HOM05D007547 ORTHO05D009590 3.3e-21 104.8 81 70.4
RcHm_v2.0_Chr5g0022881 Rosa chinensis HOM05D007547 ORTHO05D009590 3.3e-21 104.8 80 68.8
CsaV3_4G026690 Cucumis sativus L. HOM05D007547 ORTHO05D009590 4.3e-21 104.4 76 76.3
Thhalv10019600m.g Eutrema salsugineum HOM05D007547 ORTHO05D009590 4.3e-21 104.4 81 70.4
Carub.0004s0086 Capsella rubella HOM05D007547 ORTHO05D009590 5.6e-21 104.0 81 69.1
Nitab4.5_0001982g0020 Nicotiana tabacum HOM05D007547 ORTHO05D009590 5.6e-21 104.0 82 68.3
Psat1g131000 Pisum sativum HOM05D007547 ORTHO05D009590 5.6e-21 104.0 81 69.1
Aa31LG4G1780 Aethionema arabicum HOM05D007547 ORTHO05D009590 7.3e-21 103.6 81 67.9
Medtr2g062800 Medicago truncatula HOM05D007547 ORTHO05D009590 7.3e-21 103.6 80 70.0
Ciclev10007105m.g Citrus clementina HOM05D007547 ORTHO05D009590 9.5e-21 103.2 90 66.7
DCAR_013700 Daucus carota HOM05D007547 ORTHO05D009590 1.2e-20 102.8 81 67.9
Nitab4.5_0009717g0010 Nicotiana tabacum HOM05D007547 ORTHO05D009590 1.6e-20 102.4 82 67.1
unitig_26.g10053 Utricularia gibba HOM05D007547 ORTHO05D009590 2.1e-20 102.1 80 66.2
Manes.11G079000 Manihot esculenta HOM05D007547 ORTHO05D009590 2.8e-20 101.7 80 71.2
QL04p096133 Quercus lobata HOM05D007547 ORTHO05D009590 2.8e-20 101.7 79 69.6
A07p27220 Brassica napus HOM05D007547 ORTHO05D009590 3.6e-20 101.3 81 69.1
BraA07t30366Z Brassica rapa HOM05D007547 ORTHO05D009590 3.6e-20 101.3 81 69.1
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 3.6e-20 101.3 79 69.6
THA.LOC104808152 Tarenaya hassleriana HOM05D007547 ORTHO05D009590 3.6e-20 101.3 81 69.1
BraA07t31944Z Brassica rapa HOM05D007547 ORTHO05D009590 4.7e-20 100.9 81 69.1
Lalb_Chr25g0284091 Lupinus albus HOM05D007547 ORTHO05D009590 4.7e-20 100.9 81 70.4
FAN16G2958 Fragaria x ananassa HOM05D007547 ORTHO05D009590 6.2e-20 100.5 81 65.4
FAN11G3189 Fragaria x ananassa HOM05D007547 ORTHO05D009590 8.0e-20 100.1 79 65.8
TAR624G0069 Trochodendron aralioides HOM05D007547 ORTHO05D009590 8.0e-20 100.1 79 67.1
BcaC08g47491 Brassica carinata HOM05D007547 ORTHO05D009590 1.4e-19 99.4 81 67.9
C06p53150 Brassica napus HOM05D007547 ORTHO05D009590 1.4e-19 99.4 81 67.9
BolC6t40331H Brassica oleracea HOM05D007547 ORTHO05D009590 1.4e-19 99.4 81 67.9
QL04p096330 Quercus lobata HOM05D007547 ORTHO05D009590 1.4e-19 99.4 79 67.1
BcaC08g45367 Brassica carinata HOM05D007547 ORTHO05D009590 1.8e-19 99.0 81 67.9
BolC6t38159H Brassica oleracea HOM05D007547 ORTHO05D009590 1.8e-19 99.0 81 67.9
CSS0011642 Camellia sinensis var. sinensis HOM05D007547 ORTHO05D009590 1.8e-19 99.0 81 65.4
CANSAT56G0291 Cannabis sativa HOM05D007547 ORTHO05D009590 1.8e-19 99.0 79 68.4
PSO541G4573 Papaver somniferum HOM05D007547 ORTHO05D009590 3.1e-19 98.2 88 65.9
Aqoxy1G00763 Aquilegia oxysepala HOM05D007547 ORTHO05D009590 4.0e-19 97.8 81 65.4
Potri.010G176200 Populus trichocarpa HOM05D007547 ORTHO05D009590 4.0e-19 97.8 80 66.2
TWI59G1298 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 4.0e-19 97.8 81 70.4
QL04p096363 Quercus lobata HOM05D007547 ORTHO05D009590 8.9e-19 96.7 79 67.1
HPP92_021471 Vanilla planifolia HOM05D007547 ORTHO05D009590 1.5e-18 95.9 81 61.7
Cpa.g.sc118.6 Carica papaya HOM05D007547 ORTHO05D009590 5.8e-18 94.0 81 64.2
CDE06G1569 Ceratophyllum demersum HOM05D000146 ORTHO05D000178 5.8e-18 94.0 79 67.1
Gorai.009G322400 Gossypium raimondii HOM05D007547 ORTHO05D009590 7.5e-18 93.6 81 60.5
Gohir.D05G303200 Gossypium hirsutum HOM05D007547 ORTHO05D009590 1.7e-17 92.4 81 60.5
Gohir.A06G138100 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.2e-17 92.0 81 58.0
Gohir.A02G145400 Gossypium hirsutum HOM05D007547 ORTHO05D009590 2.9e-17 91.7 81 58.0
Gohir.A07G180700 Gossypium hirsutum HOM05D007547 ORTHO05D009590 6.4e-17 90.5 81 56.8
Gohir.D03G067200 Gossypium hirsutum HOM05D007547 ORTHO05D009590 6.4e-17 90.5 81 56.8
Gorai.008G081200 Gossypium raimondii HOM05D007547 ORTHO05D009590 8.3e-17 90.1 81 58.0
Eucgr.F04485 Eucalyptus grandis HOM05D007547 ORTHO05D009590 1.4e-16 89.4 90 60.0
Zm00001eb055260 Zea mays HOM05D007547 ORTHO05D009590 1.4e-16 89.4 98 54.1
ECA234G4113 Erigeron canadensis HOM05D007547 ORTHO05D009590 2.4e-16 88.6 89 58.4
Gohir.A05G237600 Gossypium hirsutum HOM05D007547 ORTHO05D009590 3.2e-16 88.2 81 55.6
Gohir.D03G007300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 3.2e-16 88.2 81 55.6
Gohir.D11G227600 Gossypium hirsutum HOM05D007547 ORTHO05D009590 3.2e-16 88.2 81 55.6
Lsat_1_v5_gn_5_102841 Lactuca sativa HOM05D007547 ORTHO05D009590 3.2e-16 88.2 89 56.2
Thecc.10G021200 Theobroma cacao HOM05D007547 ORTHO05D009590 4.1e-16 87.8 82 59.8
GSVIVG01036687001 Vitis vinifera HOM05D007547 ORTHO05D009590 4.1e-16 87.8 62 69.4
Gohir.A11G192300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 5.4e-16 87.4 81 55.6
Haze_18453 Corylus avellana HOM05D007547 ORTHO05D009147 1.6e-15 85.9 76 64.5
CDE02G1937 Ceratophyllum demersum HOM05D007547 ORTHO05D009590 2.0e-15 85.5 79 63.3
Os08g0385000 Oryza sativa ssp. japonica HOM05D007547 ORTHO05D009590 2.0e-15 85.5 91 54.9
C06p29990 Brassica napus HOM05D007547 ORTHO05D009590 6.0e-15 84.0 65 67.7
COL.COLO4_25679 Corchorus olitorius HOM05D007547 ORTHO05D009590 7.8e-15 83.6 81 55.6
Lalb_Chr25g0284071 Lupinus albus HOM05D007547 ORTHO05D009590 7.8e-15 83.6 79 64.6
BcaB02g07207 Brassica carinata HOM05D007547 ORTHO05D009590 1.5e-13 79.3 81 60.5
TWI38G1141 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 1.9e-13 79.0 84 58.3
TWI38G2170 Tripterygium wilfordii HOM05D007547 ORTHO05D009590 1.9e-13 79.0 84 58.3
Peaxi162Scf00020g01922 Petunia axillaris HOM05D007547 ORTHO05D009590 2.5e-13 78.6 64 65.6
Gohir.A05G304300 Gossypium hirsutum HOM05D007547 ORTHO05D009590 5.6e-13 77.4 73 54.8
Rhsim04G0026600 Rhododendron simsii HOM05D007547 ORTHO05D009590 1.7e-09 65.9 81 51.9
Os01g0654400 Oryza sativa ssp. japonica HOM05D007547 ORTHO05D009590 3.7e-09 64.7 82 52.4
SMO145G0072 Selaginella moellendorffii HOM05D007547 ORTHO05D009590 3.5e-07 58.2 83 49.4
Mapoly0106s0030 Marchantia polymorpha HOM05D007547 ORTHO05D009590 1.3e-06 56.2 85 45.9
AL2G39720 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 1.7e-06 55.8 40 65.0
Pp3c2_29500 Physcomitrium patens HOM05D007547 ORTHO05D009590 1.7e-06 55.8 85 51.8


User provided reference genes

Program Settings