Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 0.0e+00 1124.0 557 100.0
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 2.2e-278 961.8 556 85.8
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 6.7e-275 950.3 556 84.9
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 6.1e-268 927.2 556 80.6
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 2.9e-262 908.3 556 77.5
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 2.9e-262 908.3 556 77.7
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 8.5e-262 906.7 557 78.1
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 4.2e-261 904.4 556 77.5
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 9.4e-261 903.3 556 78.1
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 9.4e-261 903.3 556 78.2
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 1.2e-260 902.9 557 78.5
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 1.6e-260 902.5 553 78.7
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 6.1e-260 900.6 557 78.6
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 6.1e-260 900.6 559 77.6
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 1.8e-259 899.0 554 78.5
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 3.0e-259 898.3 556 77.3
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 3.9e-259 897.9 557 78.8
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 8.8e-259 896.7 554 78.3
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 2.6e-258 895.2 557 77.9
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 2.6e-258 895.2 599 75.3
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 7.4e-258 893.6 557 77.0
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 7.4e-258 893.6 557 77.2
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 7.4e-258 893.6 556 77.0
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 9.7e-258 893.3 557 77.2
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 2.2e-257 892.1 557 77.9
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 2.2e-257 892.1 556 76.1
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.7e-257 891.3 557 77.0
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 8.2e-257 890.2 557 77.0
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 7.0e-256 887.1 575 75.7
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 1.2e-255 886.3 558 76.5
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 2.6e-255 885.2 557 75.9
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 5.9e-255 884.0 565 75.8
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 1.0e-254 883.2 558 76.3
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 1.3e-254 882.9 557 76.5
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 1.3e-254 882.9 557 77.0
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 1.3e-254 882.9 557 76.7
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 1.3e-254 882.9 559 76.2
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 5.0e-254 880.9 557 77.0
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 5.5e-253 877.5 557 76.3
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 7.2e-253 877.1 557 76.1
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 9.4e-253 876.7 560 75.9
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 9.4e-253 876.7 556 76.8
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 1.6e-252 875.9 560 75.9
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 2.1e-252 875.5 557 76.3
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 3.6e-252 874.8 556 79.9
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 4.7e-252 874.4 553 75.8
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 4.7e-252 874.4 558 76.2
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 8.0e-252 873.6 554 75.8
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.4e-251 872.8 557 76.5
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 3.0e-251 871.7 557 77.0
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 4.0e-251 871.3 558 75.8
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 6.8e-251 870.5 556 75.0
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 1.2e-250 869.8 574 74.7
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.2e-250 869.8 558 75.8
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 1.5e-250 869.4 557 75.0
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 2.0e-250 869.0 559 74.4
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 7.5e-250 867.1 548 76.8
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 9.8e-250 866.7 558 74.6
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 9.8e-250 866.7 558 75.6
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 2.8e-249 865.1 557 74.3
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 1.1e-248 863.2 557 75.2
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 3.1e-248 861.7 557 74.9
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 3.5e-247 858.2 531 78.3
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 3.5e-247 858.2 557 73.8
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 5.9e-247 857.4 557 74.3
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 2.5e-245 852.0 556 74.5
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 3.2e-245 851.7 557 73.4
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 6.1e-244 847.4 555 74.2
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 6.1e-244 847.4 556 74.3
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 5.2e-243 844.3 556 74.3
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 1.2e-242 843.2 557 73.8
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 1.2e-242 843.2 556 74.6
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 1.5e-242 842.8 565 73.1
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 2.6e-242 842.0 556 72.8
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.7e-242 840.9 556 74.1
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.7e-242 840.9 556 74.1
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 5.7e-242 840.9 556 74.1
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 1.3e-241 839.7 556 73.6
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 1.7e-241 839.3 558 72.0
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 2.8e-241 838.6 556 73.9
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 2.8e-241 838.6 556 72.3
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 4.9e-241 837.8 537 75.8
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 1.1e-240 836.6 558 72.8
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 1.8e-240 835.9 556 72.7
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 7.0e-240 833.9 553 73.1
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 9.1e-240 833.6 562 73.5
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.2e-239 833.2 575 70.8
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 1.6e-239 832.8 562 73.5
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 2.7e-239 832.0 558 71.7
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 4.5e-239 831.2 546 73.3
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 7.7e-239 830.5 558 72.8
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 1.0e-238 830.1 557 71.8
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 2.3e-238 828.9 557 72.4
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 2.9e-238 828.6 574 72.0
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.9e-238 828.6 584 69.9
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 1.1e-237 826.6 531 75.7
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 3.3e-237 825.1 538 74.0
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 5.5e-237 824.3 556 72.3
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 1.2e-236 823.2 544 73.0
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 2.1e-236 822.4 569 71.9
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 2.1e-236 822.4 554 71.8
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 1.3e-233 813.1 559 70.7
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 1.4e-232 809.7 514 76.5
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 4.1e-232 808.1 552 72.3
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 5.4e-232 807.7 558 71.1
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 2.0e-231 805.8 561 72.9
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 7.8e-231 803.9 555 71.0
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 5.8e-226 787.7 540 70.9
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 3.7e-225 785.0 562 69.4
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 6.6e-222 774.2 600 65.5
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 2.5e-221 772.3 557 68.6
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 1.1e-219 766.9 488 76.2
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.3e-217 760.0 490 74.7
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.9e-216 756.1 560 67.3
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 5.4e-216 754.6 541 68.9
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 3.5e-215 751.9 557 64.3
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 6.2e-212 741.1 442 80.1
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 7.6e-210 734.2 542 67.3
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.2e-201 706.1 549 61.4
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 8.1e-196 687.6 563 62.3
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 7.3e-189 664.5 393 80.9
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 1.9e-184 649.8 541 59.1
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.3e-180 637.1 550 55.8
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 5.3e-179 631.7 391 76.5
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 7.6e-178 627.9 433 71.4
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 3.8e-177 625.5 393 77.6
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 4.6e-167 592.0 550 54.5
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 3.0e-166 589.3 551 56.4
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 4.3e-157 558.9 486 56.0
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 5.3e-155 552.0 322 80.4
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 3.1e-139 499.6 290 80.3
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 6.5e-137 491.9 308 77.9
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 6.1e-135 485.3 321 72.6
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 8.8e-134 481.5 336 69.0
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 2.0e-133 480.3 320 72.2
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 4.9e-124 449.1 291 73.2
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 2.0e-114 417.2 268 73.9
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 2.0e-106 390.6 273 69.2
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 4.4e-101 372.9 246 74.4
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 6.6e-97 359.0 238 74.4
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 3.4e-93 346.7 234 72.2
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 1.8e-86 324.3 240 67.5
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 7.6e-77 292.4 267 56.6
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.7e-52 211.5 139 72.7
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.2e-52 211.1 138 72.5
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.9e-52 210.7 137 73.0
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 6.5e-52 209.5 191 57.1
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.5e-51 207.6 139 71.2
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 2.5e-48 197.6 140 71.4
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 9.7e-48 195.7 128 72.7
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 1.7e-36 158.3 98 74.5
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 9.4e-35 152.5 116 62.9
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 1.8e-25 121.7 105 61.0
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 1.6e-21 108.6 63 76.2
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 2.0e-21 108.2 63 76.2
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 1.0e-20 105.9 71 66.2
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 5.0e-20 103.6 63 73.0
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 3.6e-18 97.4 63 71.4
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 4.7e-18 97.1 63 71.4
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 6.1e-18 96.7 492 25.6
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 2.3e-17 94.7 57 68.4
ECA247G1681 Erigeron canadensis HOM05D000257 ORTHO05D008527 1.2e-16 92.4 73 60.3
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 8.3e-15 86.3 245 26.1
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 8.3e-15 86.3 54 72.2
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 8.3e-15 86.3 490 22.9
PRCOL_00006907 Prasinoderma coloniale HOM05D013921 ORTHO05D014814 4.7e-10 70.5 560 20.9
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 5.2e-09 67.0 52 53.8
Thecc.03G047200 Theobroma cacao HOM05D000075 ORTHO05D408647 2.6e-08 64.7 64 62.5
FvH4_5g33600 Fragaria vesca HOM05D001656 ORTHO05D005043 1.1e-06 59.3 49 59.2
FAN18G3130 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.1e-06 59.3 49 59.2


User provided reference genes

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