Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 0.0e+00 1182.9 622 100.0
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 2.6e-142 510.0 637 52.3
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 1.3e-133 481.1 644 51.6
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 1.3e-133 481.1 641 51.8
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 3.7e-96 356.7 706 38.2
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 6.3e-72 276.2 579 37.5
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 6.1e-59 233.0 652 31.0
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 1.8e-58 231.5 608 35.4
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 4.8e-56 223.4 657 30.6
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 2.2e-53 214.5 659 30.7
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 3.8e-53 213.8 640 30.5
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 5.0e-53 213.4 652 32.5
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 2.1e-51 208.0 658 31.2
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 1.2e-49 202.2 593 32.7
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 9.8e-49 199.1 663 29.4
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 4.1e-47 193.7 653 30.8
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 5.4e-47 193.4 670 29.1
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 1.6e-46 191.8 675 30.2
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 2.0e-46 191.4 600 31.7
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 3.5e-46 190.7 441 35.1
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 4.5e-46 190.3 589 30.4
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 1.3e-45 188.7 659 29.3
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 1.3e-45 188.7 650 30.5
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 1.7e-45 188.3 633 29.9
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 2.3e-45 188.0 666 30.5
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 3.8e-45 187.2 650 30.5
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 5.0e-45 186.8 634 30.4
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 5.0e-45 186.8 634 30.4
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 2.5e-44 184.5 705 29.2
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 1.6e-43 181.8 607 30.5
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 2.8e-43 181.0 427 33.7
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 8.0e-43 179.5 608 30.4
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 8.0e-43 179.5 637 29.4
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 8.0e-43 179.5 352 36.4
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 1.0e-42 179.1 671 30.0
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 1.0e-42 179.1 649 30.7
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 1.0e-42 179.1 631 29.2
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 1.8e-42 178.3 377 34.2
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 1.8e-42 178.3 628 28.7
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 3.0e-42 177.6 426 33.8
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 4.0e-42 177.2 662 28.4
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 5.2e-42 176.8 675 30.4
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 5.2e-42 176.8 646 29.1
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 8.9e-42 176.0 654 30.9
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 2.0e-41 174.9 614 28.8
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 2.6e-41 174.5 662 28.2
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 3.4e-41 174.1 339 34.5
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 4.4e-41 173.7 420 34.8
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 2.8e-40 171.0 338 34.6
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 3.7e-40 170.6 663 29.1
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 8.3e-40 169.5 607 29.0
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 1.1e-39 169.1 685 28.0
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 1.1e-39 169.1 426 32.2
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 1.4e-39 168.7 674 29.4
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 3.1e-39 167.5 673 29.4
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 7.0e-39 166.4 423 33.8
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 7.0e-39 166.4 692 28.3
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 1.6e-38 165.2 627 29.5
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 2.0e-38 164.9 672 29.5
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 7.8e-38 162.9 675 29.9
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 1.3e-37 162.2 468 29.9
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 2.3e-37 161.4 568 29.9
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 3.8e-37 160.6 707 28.1
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 5.0e-37 160.2 604 31.6
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 7.3e-36 156.4 350 35.7
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 1.2e-35 155.6 374 29.7
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 1.2e-35 155.6 673 28.2
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 8.0e-35 152.9 379 34.3
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 1.0e-34 152.5 350 32.6
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 1.4e-34 152.1 653 29.2
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 8.9e-34 149.4 326 33.4
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 1.5e-33 148.7 675 28.4
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 2.6e-33 147.9 712 25.1
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 4.4e-33 147.1 542 29.5
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 5.8e-33 146.7 689 27.7
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 1.3e-32 145.6 371 32.9
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 8.3e-32 142.9 669 27.5
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 1.4e-31 142.1 687 27.2
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 1.9e-31 141.7 645 27.9
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 2.0e-30 138.3 734 26.7
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 4.6e-30 137.1 566 28.1
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 1.7e-29 135.2 500 27.2
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 8.6e-29 132.9 393 30.8
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 2.3e-26 124.8 673 25.7
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 1.5e-25 122.1 575 25.9
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 2.9e-24 117.9 608 26.0
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 3.7e-24 117.5 584 24.8
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 6.4e-24 116.7 597 28.6
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 1.3e-21 109.0 565 25.5
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 1.7e-21 108.6 565 25.5
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 3.0e-21 107.8 564 26.1
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 6.6e-21 106.7 238 33.2
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 1.2e-19 102.4 576 27.3
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 1.2e-19 102.4 576 27.3
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 2.1e-19 101.7 550 26.4
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 3.6e-19 100.9 378 30.4
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 4.7e-19 100.5 562 24.2
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 1.4e-18 99.0 437 28.4
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 4.0e-18 97.4 446 26.9
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 2.0e-17 95.1 557 25.1
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 9.9e-17 92.8 645 24.8
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 1.3e-16 92.4 446 26.2
unitig_578.g16692 Utricularia gibba HOM05D001393 ORTHO05D007477 7.8e-14 83.2 463 25.3
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 2.3e-13 81.6 90 48.9
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 1.2e-11 75.9 555 24.1
Dinv43434 Davidia involucrata HOM05D001393 ORTHO05D007477 3.6e-11 74.3 128 38.3
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 2.4e-10 71.6 396 27.0
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 2.2e-08 65.1 93 40.9


User provided reference genes

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