Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 1.6e-38 162.2 76 100.0
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 1.5e-23 112.5 76 68.4
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 4.7e-22 107.5 76 64.5
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 2.0e-20 102.1 76 67.1
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.2e-12 76.3 48 72.9
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.2e-12 76.3 48 72.9
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.2e-12 76.3 48 72.9
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.5e-12 75.9 81 54.3
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 2.0e-12 75.5 65 56.9
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 2.0e-12 75.5 65 56.9
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 2.0e-12 75.5 65 56.9
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.0e-12 75.5 81 54.3
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 4.4e-12 74.3 54 61.1
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 7.6e-12 73.6 73 50.7
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 9.9e-12 73.2 62 53.2
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 9.9e-12 73.2 64 59.4
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 1.3e-11 72.8 65 50.8
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 1.7e-11 72.4 84 45.2
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 1.7e-11 72.4 34 88.2
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 1.7e-11 72.4 63 55.6
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 2.9e-11 71.6 73 46.6
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 2.9e-11 71.6 86 41.9
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.8e-11 71.2 54 59.3
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 3.8e-11 71.2 54 57.4
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 3.8e-11 71.2 46 69.6
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 3.8e-11 71.2 77 45.5
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 4.9e-11 70.9 86 47.7
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 4.9e-11 70.9 81 45.7
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 6.4e-11 70.5 49 59.2
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.4e-11 70.5 69 53.6
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 6.4e-11 70.5 33 87.9
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 8.4e-11 70.1 33 87.9
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 8.4e-11 70.1 69 52.2
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 8.4e-11 70.1 69 52.2
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 8.4e-11 70.1 52 55.8
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.1e-10 69.7 44 70.5
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 1.1e-10 69.7 95 48.4
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 1.4e-10 69.3 63 55.6
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 1.4e-10 69.3 39 74.4
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 1.4e-10 69.3 49 61.2
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.9e-10 68.9 36 80.6
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 1.9e-10 68.9 62 56.5
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 2.4e-10 68.6 47 61.7
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 3.2e-10 68.2 51 56.9
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 3.2e-10 68.2 62 53.2
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 3.2e-10 68.2 39 74.4
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 3.2e-10 68.2 72 52.8
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.1e-10 67.8 79 50.6
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 4.1e-10 67.8 33 81.8
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 4.1e-10 67.8 33 81.8
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 4.1e-10 67.8 33 81.8
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 5.4e-10 67.4 63 52.4
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 5.4e-10 67.4 68 47.1
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.4e-10 67.4 86 44.2
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 7.1e-10 67.0 55 58.2
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 7.1e-10 67.0 63 50.8
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 7.1e-10 67.0 40 67.5
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 7.1e-10 67.0 33 81.8
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 9.2e-10 66.6 78 52.6
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 9.2e-10 66.6 44 63.6
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.2e-10 66.6 54 57.4
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.2e-09 66.2 63 50.8
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.2e-09 66.2 63 50.8
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.2e-09 66.2 63 50.8
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 1.2e-09 66.2 63 50.8
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 1.2e-09 66.2 63 52.4
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.6e-09 65.9 67 46.3
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.6e-09 65.9 82 43.9
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 1.6e-09 65.9 40 67.5
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.6e-09 65.9 50 60.0
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.1e-09 65.5 32 81.2
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 2.1e-09 65.5 33 78.8
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.1e-09 65.5 33 78.8
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.7e-09 65.1 32 81.2
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 2.7e-09 65.1 44 61.4
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 2.7e-09 65.1 33 78.8
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 3.5e-09 64.7 33 75.8
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 3.5e-09 64.7 33 75.8
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 3.5e-09 64.7 33 75.8
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 3.5e-09 64.7 33 75.8
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.5e-09 64.7 43 60.5
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.5e-09 64.7 65 49.2
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 3.5e-09 64.7 65 49.2
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.5e-09 64.7 63 50.8
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 4.6e-09 64.3 63 52.4
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 4.6e-09 64.3 33 75.8
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 6.0e-09 63.9 64 54.7
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 6.0e-09 63.9 32 78.1
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 6.0e-09 63.9 51 58.8
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 7.8e-09 63.5 38 71.1
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 7.8e-09 63.5 32 81.2
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 7.8e-09 63.5 33 75.8
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 7.8e-09 63.5 33 75.8
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 1.0e-08 63.2 48 56.2
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 1.0e-08 63.2 43 67.4
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 1.0e-08 63.2 33 75.8
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 1.3e-08 62.8 74 48.6
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.3e-08 62.8 30 86.7
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.3e-08 62.8 33 75.8
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.3e-08 62.8 85 45.9
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.3e-08 62.8 73 45.2
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 1.3e-08 62.8 52 53.8
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 1.7e-08 62.4 42 59.5
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 2.3e-08 62.0 33 75.8
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 2.3e-08 62.0 32 78.1
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 2.3e-08 62.0 32 78.1
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 3.0e-08 61.6 33 75.8
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 3.0e-08 61.6 63 50.8
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 3.0e-08 61.6 63 50.8
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.0e-08 61.6 69 47.8
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 3.9e-08 61.2 30 83.3
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 3.9e-08 61.2 30 83.3
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 3.9e-08 61.2 30 83.3
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 3.9e-08 61.2 63 52.4
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.9e-08 61.2 43 58.1
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 3.9e-08 61.2 31 80.6
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 5.1e-08 60.8 30 83.3
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 5.1e-08 60.8 59 55.9
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 5.1e-08 60.8 30 83.3
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 5.1e-08 60.8 31 77.4
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 5.1e-08 60.8 37 67.6
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 6.6e-08 60.5 33 75.8
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 8.7e-08 60.1 30 80.0
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 8.7e-08 60.1 50 54.0
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 8.7e-08 60.1 85 42.4
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.1e-07 59.7 32 78.1
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 1.1e-07 59.7 63 49.2
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.1e-07 59.7 33 72.7
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.1e-07 59.7 33 75.8
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 1.1e-07 59.7 82 46.3
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 1.5e-07 59.3 74 45.9
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 1.5e-07 59.3 33 69.7
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 1.9e-07 58.9 32 75.0
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.9e-07 58.9 30 76.7
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.9e-07 58.9 88 47.7
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 1.9e-07 58.9 31 74.2
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 2.5e-07 58.5 63 46.0
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 2.5e-07 58.5 33 75.8
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.5e-07 58.5 33 72.7
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 2.5e-07 58.5 33 78.8
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.5e-07 58.5 37 62.2
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 3.3e-07 58.2 30 76.7
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 3.3e-07 58.2 30 76.7
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 3.3e-07 58.2 30 80.0
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 4.3e-07 57.8 30 80.0
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 4.3e-07 57.8 30 80.0
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 4.3e-07 57.8 33 69.7
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 4.3e-07 57.8 33 69.7
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 4.3e-07 57.8 29 82.8
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 4.3e-07 57.8 33 69.7
Nitab4.5_0000808g0050 Nicotiana tabacum HOM05D003654 ORTHO05D004176 7.3e-07 57.0 71 40.8
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 7.3e-07 57.0 29 79.3
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 7.3e-07 57.0 30 73.3
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 9.6e-07 56.6 30 76.7
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 9.6e-07 56.6 43 53.5
Potri.009G058500 Populus trichocarpa HOM05D003654 ORTHO05D004176 9.6e-07 56.6 32 78.1
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 9.6e-07 56.6 30 73.3
Nitab4.5_0005680g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.2e-06 56.2 71 40.8
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 2.1e-06 55.5 30 70.0
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 2.1e-06 55.5 30 70.0
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 2.1e-06 55.5 73 41.1
Lsat_1_v5_gn_1_105600 Lactuca sativa HOM05D003654 ORTHO05D004176 3.6e-06 54.7 70 42.9
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 3.6e-06 54.7 30 66.7
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 6.2e-06 53.9 32 68.8
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 8.1e-06 53.5 43 48.8
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 8.1e-06 53.5 43 48.8


User provided reference genes

Program Settings