Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 1.2e-158 563.1 295 100.0
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 2.8e-102 375.9 296 67.9
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 1.4e-101 373.6 295 67.8
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 3.2e-42 176.4 307 36.5
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 3.7e-38 162.9 318 35.5
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 4.8e-38 162.5 318 35.8
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 5.3e-37 159.1 295 36.3
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 1.5e-36 157.5 310 34.8
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 1.5e-36 157.5 282 37.2
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 4.5e-36 156.0 307 34.2
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 2.2e-35 153.7 331 35.6
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 6.5e-35 152.1 310 33.5
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 3.2e-34 149.8 310 35.5
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 5.5e-34 149.1 315 33.3
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 2.1e-33 147.1 309 35.3
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 3.6e-33 146.4 312 37.2
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 4.7e-33 146.0 312 34.0
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 7.9e-33 145.2 306 35.0
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 1.8e-32 144.1 320 34.7
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 2.3e-32 143.7 286 35.3
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 5.1e-32 142.5 339 34.5
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 6.7e-32 142.1 312 33.3
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 8.8e-32 141.7 282 35.5
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 1.5e-31 141.0 318 34.0
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 2.0e-31 140.6 309 34.0
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 7.4e-31 138.7 320 35.6
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 9.7e-31 138.3 304 34.5
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 2.2e-30 137.1 307 33.9
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 2.2e-30 137.1 310 34.2
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 4.8e-30 136.0 289 34.3
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 7.0e-29 132.1 315 31.4
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 7.0e-29 132.1 313 32.3
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 9.1e-29 131.7 315 33.7
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 9.1e-29 131.7 294 33.7
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 1.2e-28 131.3 323 35.3
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 1.2e-28 131.3 317 33.8
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 2.0e-28 130.6 283 33.2
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 2.6e-28 130.2 281 33.8
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 2.6e-28 130.2 288 32.6
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 3.5e-28 129.8 308 33.8
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 7.7e-28 128.6 259 37.5
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 1.0e-27 128.3 290 34.8
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.3e-27 127.9 317 31.5
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 1.3e-27 127.9 316 31.3
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 1.3e-27 127.9 312 32.1
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 1.3e-27 127.9 269 30.5
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 2.9e-27 126.7 318 33.0
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 3.8e-27 126.3 318 33.3
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 5.0e-27 125.9 331 32.0
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 6.5e-27 125.6 279 33.0
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 6.5e-27 125.6 315 29.2
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 8.5e-27 125.2 322 31.1
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 8.5e-27 125.2 323 34.1
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 8.5e-27 125.2 288 34.0
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 1.1e-26 124.8 286 31.5
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.1e-26 124.8 286 31.5
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 1.1e-26 124.8 321 30.5
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 1.5e-26 124.4 323 31.0
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 1.9e-26 124.0 288 34.4
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 1.9e-26 124.0 318 32.4
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 1.9e-26 124.0 309 31.1
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 2.5e-26 123.6 290 34.5
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 3.2e-26 123.2 344 31.1
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 7.2e-26 122.1 278 30.6
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 2.1e-25 120.6 313 31.0
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 3.6e-25 119.8 305 29.2
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 3.6e-25 119.8 286 33.2
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 8.0e-25 118.6 311 33.8
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 1.0e-24 118.2 307 29.0
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 1.8e-24 117.5 278 28.1
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 2.3e-24 117.1 283 30.0
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 3.0e-24 116.7 283 30.4
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 3.9e-24 116.3 314 32.2
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 3.9e-24 116.3 318 30.8
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 3.9e-24 116.3 290 33.4
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 2.6e-23 113.6 295 30.2
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 2.6e-23 113.6 295 30.2
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 4.4e-23 112.8 312 32.4
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 5.7e-23 112.5 239 32.2
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 1.3e-22 111.3 318 31.4
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 1.3e-22 111.3 276 30.4
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 2.8e-22 110.2 307 31.3
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 2.8e-22 110.2 315 32.1
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 2.8e-22 110.2 295 29.8
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 4.8e-22 109.4 285 31.2
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 1.1e-21 108.2 234 35.0
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 3.1e-21 106.7 308 28.6
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 5.3e-21 105.9 283 31.8
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.7e-19 100.9 286 30.1
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 2.2e-19 100.5 309 30.1
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 6.5e-19 99.0 302 29.5
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 1.1e-18 98.2 191 37.2
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 1.5e-18 97.8 278 31.7
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 9.4e-18 95.1 293 28.3
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 1.2e-17 94.7 306 29.1
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 3.6e-17 93.2 301 30.9
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 1.3e-14 84.7 292 27.1
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 6.3e-14 82.4 271 28.4
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 4.1e-13 79.7 105 39.0
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 4.1e-13 79.7 237 30.8
Actinidia08354 Actinidia chinensis HOM05D007109 ORTHO05D008813 9.1e-13 78.6 116 35.3
Actinidia25349 Actinidia chinensis HOM05D007109 ORTHO05D008813 9.1e-13 78.6 116 35.3
unitig_22.g5431 Utricularia gibba HOM05D007109 ORTHO05D008813 2.7e-12 77.0 241 30.7
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 3.8e-11 73.2 85 45.9
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 7.2e-10 68.9 272 27.6
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 6.1e-09 65.9 112 33.9
A10p00440 Brassica napus HOM05D002440 ORTHO05D002576 1.4e-08 64.7 300 25.3
Carub.0001s0069 Capsella rubella HOM05D002440 ORTHO05D002576 5.2e-08 62.8 299 25.8
CDE02G4387 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 5.2e-08 62.8 297 25.9
AT1G01550 Arabidopsis thaliana HOM05D002440 ORTHO05D002576 8.8e-08 62.0 299 25.4
Sp1g00770 Schrenkiella parvula HOM05D002440 ORTHO05D002576 1.5e-07 61.2 319 25.1
AL1G10850 Arabidopsis lyrata HOM05D002440 ORTHO05D002576 2.0e-07 60.8 299 25.1
BraA10t42324Z Brassica rapa HOM05D002440 ORTHO05D002576 2.0e-07 60.8 300 25.0
Thhalv10008079m.g Eutrema salsugineum HOM05D002440 ORTHO05D002576 2.0e-07 60.8 300 25.7
BcaB03g13592 Brassica carinata HOM05D002440 ORTHO05D002576 4.4e-07 59.7 300 24.7
C05p00480 Brassica napus HOM05D002440 ORTHO05D002576 4.4e-07 59.7 300 24.7
BolC5t28837H Brassica oleracea HOM05D002440 ORTHO05D002576 4.4e-07 59.7 300 24.7
CDE11G0334 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 2.8e-06 57.0 299 26.1
MD00G1111800 Malus domestica HOM05D002440 ORTHO05D002576 6.3e-06 55.8 283 26.1
Aa31LG1G10730 Aethionema arabicum HOM05D002440 ORTHO05D002576 8.3e-06 55.5 315 23.8


User provided reference genes

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