Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 2.4e-212 741.9 366 100.0
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 1.8e-114 416.8 411 56.7
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 7.6e-110 401.4 440 52.5
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 6.9e-103 378.3 396 55.8
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 5.5e-84 315.5 418 45.5
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 7.2e-68 261.9 436 36.9
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 2.0e-65 253.8 432 38.0
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 3.4e-65 253.1 447 36.9
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 5.9e-62 242.3 444 36.0
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 4.2e-60 236.1 427 35.8
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 5.5e-60 235.7 429 36.1
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 1.2e-59 234.6 435 35.6
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 3.6e-59 233.0 425 36.2
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 8.8e-58 228.4 489 32.3
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 3.4e-57 226.5 431 34.6
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 4.4e-57 226.1 403 37.0
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.5e-57 225.3 403 36.5
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 1.3e-56 224.6 427 34.7
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 1.7e-56 224.2 403 36.5
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 2.2e-56 223.8 407 36.9
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 2.8e-56 223.4 428 34.8
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 2.8e-56 223.4 438 34.0
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 6.3e-56 222.2 429 34.7
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 6.3e-56 222.2 425 34.1
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 1.8e-55 220.7 429 35.7
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 1.8e-55 220.7 438 32.6
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 2.4e-55 220.3 439 34.4
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 9.2e-55 218.4 429 35.4
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 9.2e-55 218.4 407 36.6
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 9.2e-55 218.4 426 33.6
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 1.6e-54 217.6 423 34.3
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 2.7e-54 216.9 432 33.8
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 4.5e-54 216.1 415 33.3
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 4.5e-54 216.1 429 33.8
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 1.0e-53 214.9 444 34.7
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 1.3e-53 214.5 441 34.0
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 1.7e-53 214.2 451 33.5
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 2.3e-53 213.8 372 38.2
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 2.3e-53 213.8 426 34.0
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 2.9e-53 213.4 427 34.2
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 3.8e-53 213.0 412 35.0
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 1.1e-52 211.5 434 35.0
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 2.5e-52 210.3 435 33.1
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 2.5e-52 210.3 427 33.3
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 3.3e-52 209.9 422 34.6
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 7.3e-52 208.8 429 35.4
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 9.5e-52 208.4 441 33.3
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 1.6e-51 207.6 433 32.8
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 2.1e-51 207.2 424 34.9
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 2.8e-51 206.8 429 33.6
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 4.7e-51 206.1 424 34.7
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 8.0e-51 205.3 350 36.3
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 4.0e-50 203.0 438 32.9
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 8.9e-50 201.8 413 35.8
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 4.4e-49 199.5 390 35.6
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 2.9e-48 196.8 435 33.8
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 3.7e-48 196.4 406 34.0
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 3.7e-48 196.4 431 32.5
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 4.9e-48 196.1 405 34.3
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 6.4e-48 195.7 436 32.3
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 6.4e-48 195.7 436 32.3
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 6.4e-48 195.7 419 32.9
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 1.1e-47 194.9 431 32.3
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 1.1e-47 194.9 395 35.7
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.4e-47 194.5 403 34.2
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 1.4e-47 194.5 409 33.5
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 4.1e-47 193.0 435 32.2
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 4.1e-47 193.0 436 32.1
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 9.2e-47 191.8 428 32.5
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 7.8e-46 188.7 427 32.6
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 1.0e-45 188.3 428 33.4
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 1.3e-45 188.0 420 31.7
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 1.7e-45 187.6 425 31.8
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 1.1e-44 184.9 407 32.9
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 1.1e-44 184.9 395 33.7
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 1.1e-44 184.9 430 34.0
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 1.1e-44 184.9 430 31.9
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 4.3e-44 183.0 365 33.7
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 5.6e-44 182.6 427 32.8
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 5.6e-44 182.6 409 32.5
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 5.6e-44 182.6 409 32.5
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 7.3e-44 182.2 430 30.9
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 1.6e-43 181.0 426 31.7
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 3.6e-43 179.9 421 31.6
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 6.2e-43 179.1 395 32.4
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 6.2e-43 179.1 419 30.3
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 1.8e-42 177.6 423 31.4
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 2.3e-42 177.2 406 32.3
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 4.0e-42 176.4 370 34.6
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 8.9e-42 175.3 447 29.1
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 5.8e-41 172.6 366 33.9
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 2.2e-40 170.6 367 32.7
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 4.1e-39 166.4 323 35.0
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 1.2e-38 164.9 185 53.0
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 1.2e-38 164.9 285 37.5
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 1.2e-38 164.9 384 32.6
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 2.7e-38 163.7 361 33.5
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 3.5e-38 163.3 428 30.1
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.0e-37 161.8 389 33.2
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 2.5e-36 157.1 390 31.3
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 2.3e-34 150.6 441 29.7
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 3.1e-34 150.2 177 48.6
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.8e-34 149.1 179 50.3
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 8.9e-34 148.7 185 45.9
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 9.8e-33 145.2 427 26.9
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 6.4e-32 142.5 184 41.8
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 2.1e-30 137.5 199 40.7
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 4.3e-28 129.8 209 40.2
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 2.8e-27 127.1 195 41.5
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 8.1e-27 125.6 263 34.2
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 6.8e-26 122.5 154 46.8
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 3.8e-24 116.7 163 37.4
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 8.4e-24 115.5 180 41.7
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 5.4e-23 112.8 95 62.1
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 5.1e-21 106.3 369 28.2
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 2.5e-20 104.0 118 40.7
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 2.1e-19 100.9 238 31.5
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 3.6e-19 100.1 185 37.8
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 6.2e-19 99.4 122 41.0
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 8.1e-19 99.0 262 30.2
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 3.1e-18 97.1 244 31.6
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 5.2e-18 96.3 193 37.8
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 5.2e-18 96.3 193 37.8
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 5.2e-18 96.3 165 36.4
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 2.6e-17 94.0 245 29.8
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 7.6e-17 92.4 228 31.6
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 1.7e-16 91.3 134 41.0
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 2.4e-15 87.4 131 39.7
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 1.2e-14 85.1 147 42.9
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 2.1e-14 84.3 265 28.7
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 2.7e-14 84.0 264 27.7
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 1.7e-13 81.3 119 40.3
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 1.5e-12 78.2 154 31.8
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 1.9e-12 77.8 80 47.5
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 7.3e-12 75.9 77 49.4
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 3.6e-11 73.6 103 39.8
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 1.1e-10 72.0 131 33.6
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 3.1e-10 70.5 144 38.2
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 2.6e-09 67.4 80 37.5
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 2.2e-08 64.3 94 35.1
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 5.4e-07 59.7 59 50.8
Lsat_1_v5_gn_6_39820 Lactuca sativa HOM05D004964 ORTHO05D005918 1.2e-06 58.5 46 58.7
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 2.1e-06 57.8 165 27.3
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 3.5e-06 57.0 68 42.6


User provided reference genes

Program Settings