Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 4.3e-204 714.5 385 100.0
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 5.5e-127 458.4 333 77.2
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 5.2e-109 398.7 345 67.0
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 7.8e-105 384.8 332 65.4
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 3.9e-96 355.9 340 60.6
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 8.1e-94 348.2 341 59.5
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 1.8e-93 347.1 337 59.9
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.3e-91 340.9 341 59.5
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 2.9e-91 339.7 340 60.3
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 3.7e-91 339.3 340 58.8
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 1.1e-90 337.8 341 59.2
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 1.4e-90 337.4 342 59.6
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 1.2e-89 334.3 340 57.4
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 2.7e-89 333.2 347 59.1
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 1.3e-88 330.9 342 57.9
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.3e-88 330.9 335 57.3
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 3.9e-88 329.3 335 57.0
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 5.1e-88 328.9 341 59.8
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 6.6e-88 328.6 338 58.9
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 1.1e-87 327.8 343 58.6
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 1.1e-87 327.8 340 57.4
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.5e-87 327.4 342 55.8
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.5e-87 326.6 342 58.2
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 2.5e-87 326.6 341 57.8
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 2.5e-87 326.6 344 57.0
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 4.3e-87 325.9 342 58.2
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 5.6e-87 325.5 341 56.9
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 5.6e-87 325.5 340 56.8
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 7.3e-87 325.1 341 58.9
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 1.2e-86 324.3 337 56.4
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 1.2e-86 324.3 340 56.2
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 1.6e-86 323.9 340 55.3
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 1.6e-86 323.9 339 56.3
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 1.6e-86 323.9 336 59.5
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 2.1e-86 323.6 339 56.0
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 2.8e-86 323.2 333 57.4
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 4.7e-86 322.4 338 55.3
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 6.2e-86 322.0 348 57.5
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 8.1e-86 321.6 338 57.1
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 1.8e-85 320.5 339 57.5
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 3.1e-85 319.7 334 56.9
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 3.1e-85 319.7 338 55.9
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 3.1e-85 319.7 338 55.9
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 3.1e-85 319.7 344 59.9
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 3.1e-85 319.7 347 57.3
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 3.1e-85 319.7 334 56.9
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 5.2e-85 318.9 343 57.7
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 6.8e-85 318.5 340 55.3
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 8.9e-85 318.2 337 55.8
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 1.2e-84 317.8 338 55.0
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 1.5e-84 317.4 338 55.0
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 2.0e-84 317.0 340 57.1
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.7e-83 313.9 337 57.0
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 2.2e-83 313.5 343 57.7
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 2.2e-83 313.5 333 55.3
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 3.8e-83 312.8 344 57.8
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 4.9e-83 312.4 338 55.9
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 6.4e-83 312.0 341 54.5
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.9e-82 310.5 340 54.7
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.9e-82 310.5 340 54.7
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 2.4e-82 310.1 337 55.2
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 2.4e-82 310.1 347 55.0
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 3.2e-82 309.7 346 54.0
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 5.4e-82 308.9 337 56.7
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 5.4e-82 308.9 352 56.5
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 9.2e-82 308.1 343 54.2
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 1.6e-81 307.4 336 57.4
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 1.6e-81 307.4 334 55.7
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 3.5e-81 306.2 339 55.8
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 3.5e-81 306.2 339 54.6
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.3e-80 304.3 355 54.1
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 2.3e-80 303.5 343 54.5
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 1.1e-79 301.2 331 55.6
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 1.9e-79 300.4 341 55.1
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 1.2e-78 297.7 333 55.0
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 4.7e-78 295.8 292 59.9
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 8.1e-78 295.0 358 53.9
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.4e-77 294.3 334 54.2
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 1.8e-77 293.9 293 60.4
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 2.4e-77 293.5 340 53.5
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 4.0e-77 292.7 332 56.0
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 4.0e-77 292.7 375 50.7
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 4.0e-77 292.7 334 55.1
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 1.2e-76 291.2 325 52.6
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 1.5e-76 290.8 348 52.6
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 7.6e-76 288.5 341 55.1
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 7.6e-76 288.5 341 55.1
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 3.2e-74 283.1 334 52.7
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 2.7e-73 280.0 339 52.8
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 8.7e-72 275.0 361 48.2
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 4.3e-71 272.7 332 52.4
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 4.8e-70 269.2 404 44.6
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 1.8e-69 267.3 397 47.4
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.5e-68 264.2 263 60.5
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 7.6e-68 261.9 340 50.9
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 7.1e-66 255.4 333 48.0
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 9.0e-61 238.4 231 61.0
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 6.4e-59 232.3 235 58.7
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 2.4e-58 230.3 333 45.9
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 2.1e-57 227.3 328 47.0
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 1.4e-53 214.5 234 55.1
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.0e-51 208.4 201 60.7
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 2.3e-48 197.2 246 53.7
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 8.7e-48 195.3 343 43.7
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 9.7e-47 191.8 227 54.2
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 9.0e-45 185.3 141 70.9
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 1.9e-42 177.6 192 56.2
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 1.9e-39 167.5 170 60.0
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 2.8e-38 163.7 292 38.4
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.2e-36 158.3 303 40.3
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 5.9e-36 156.0 307 41.0
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 2.5e-34 150.6 112 71.4
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 4.7e-33 146.4 203 48.8
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.1e-31 141.7 156 57.1
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 2.6e-31 140.6 96 71.9
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 4.1e-29 133.3 285 37.2
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 2.3e-24 117.5 211 39.3
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.8e-21 107.8 274 37.2
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 7.0e-21 105.9 309 32.0
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 4.5e-20 103.2 160 43.8
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 1.9e-18 97.8 94 57.4
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 3.3e-15 87.0 68 67.6
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 1.8e-13 81.3 97 46.4
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 5.9e-12 76.3 77 58.4
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 2.2e-11 74.3 315 26.0
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 2.5e-10 70.9 90 44.4
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 4.7e-09 66.6 167 35.9
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.5e-07 61.6 46 69.6
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 2.2e-06 57.8 112 35.7


User provided reference genes

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