Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g037290 Amaranthus hybridus HOM05D003636 ORTHO05D005160 8.0e-268 926.8 564 100.0
Ah.09g223830 Amaranthus hybridus HOM05D003636 ORTHO05D005160 1.4e-240 836.3 539 95.0
EL10Ac2g04633 Beta vulgaris HOM05D003636 ORTHO05D005160 7.1e-139 498.4 549 57.6
AUR62014577 Chenopodium quinoa HOM05D003636 ORTHO05D005160 8.6e-137 491.5 500 57.4
AUR62039385 Chenopodium quinoa HOM05D003636 ORTHO05D005160 4.7e-135 485.7 397 66.5
Hund05016 Selenicereus undatus HOM05D003636 ORTHO05D005160 1.7e-121 440.7 403 59.3
Sc13g0005100 Simmondsia chinensis HOM05D003636 ORTHO05D005160 1.1e-104 384.8 548 45.4
Ciclev10004361m.g Citrus clementina HOM05D003636 ORTHO05D005160 8.2e-103 378.6 554 47.3
TWI73G0437 Tripterygium wilfordii HOM05D003636 ORTHO05D005160 6.0e-98 362.5 554 44.4
Actinidia19047 Actinidia chinensis HOM05D003636 ORTHO05D005160 1.0e-97 361.7 574 44.3
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 3.8e-92 343.2 567 43.0
Potri.001G415900 Populus trichocarpa HOM05D003636 ORTHO05D005160 2.5e-91 340.5 409 49.4
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 1.2e-90 338.2 380 50.8
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 3.0e-89 333.6 561 44.2
Sabra16G0282600 Salix brachista HOM05D003636 ORTHO05D005160 1.5e-88 331.3 400 48.8
Nn1g02632 Nelumbo nucifera HOM05D003636 ORTHO05D005160 2.0e-88 330.9 584 42.5
Aqoxy2G03579 Aquilegia oxysepala HOM05D003636 ORTHO05D005160 4.3e-88 329.7 545 44.8
vmacro15411 Vaccinium macrocarpon HOM05D003636 ORTHO05D005160 4.3e-88 329.7 377 50.7
MD13G1208100 Malus domestica HOM05D003636 ORTHO05D005160 1.3e-87 328.2 567 43.6
QL02p053474 Quercus lobata HOM05D003636 ORTHO05D005160 3.7e-87 326.6 481 45.5
Migut.G00443 Erythranthe guttata HOM05D003636 ORTHO05D005160 1.1e-86 325.1 559 45.3
arahy.Tifrunner.gnm1.ann1.7RJ7GD Arachis hypogaea HOM05D003636 ORTHO05D005160 1.4e-86 324.7 394 50.0
Thecc.04G247000 Theobroma cacao HOM05D003636 ORTHO05D005160 2.4e-86 323.9 552 46.9
RcHm_v2.0_Chr5g0000461 Rosa chinensis HOM05D003636 ORTHO05D005160 3.1e-86 323.6 543 45.7
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 5.3e-86 322.8 554 40.8
Haze_11308 Corylus avellana HOM05D003636 ORTHO05D005160 6.9e-86 322.4 401 48.1
CiPaw.02G115900 Carya illinoinensis HOM05D003636 ORTHO05D005160 9.1e-86 322.0 405 46.7
THA.LOC104801942 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 1.2e-85 321.6 407 48.6
Atru.chr4.2209 Acer truncatum HOM05D003636 ORTHO05D005160 1.5e-85 321.2 556 43.5
TAR362G1191 Trochodendron aralioides HOM05D003636 ORTHO05D005160 2.6e-85 320.5 599 40.1
COL.COLO4_15803 Corchorus olitorius HOM05D003636 ORTHO05D005160 4.5e-85 319.7 384 48.4
RcHm_v2.0_Chr4g0390791 Rosa chinensis HOM05D003636 ORTHO05D005160 7.7e-85 318.9 395 47.6
GSVIVG01018130001 Vitis vinifera HOM05D003636 ORTHO05D005160 2.9e-84 317.0 500 42.2
Haze_11311 Corylus avellana HOM05D003636 ORTHO05D005160 5.0e-84 316.2 401 46.1
arahy.Tifrunner.gnm1.ann1.T9EQBK Arachis hypogaea HOM05D003636 ORTHO05D005160 2.5e-83 313.9 539 44.0
Gohir.D06G065300 Gossypium hirsutum HOM05D003636 ORTHO05D005160 2.1e-82 310.8 555 43.4
Lalb_Chr21g0308481 Lupinus albus HOM05D003636 ORTHO05D005160 2.1e-82 310.8 386 49.5
Gorai.010G076500 Gossypium raimondii HOM05D003636 ORTHO05D005160 3.6e-82 310.1 555 42.3
Phvul.007G037800 Phaseolus vulgaris HOM05D003636 ORTHO05D005160 4.7e-82 309.7 385 48.8
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 6.1e-82 309.3 399 47.4
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 6.1e-82 309.3 504 42.7
Gohir.A06G066800 Gossypium hirsutum HOM05D003636 ORTHO05D005160 6.7e-81 305.8 570 41.9
Hma1.2p1_1276F.1_g272050 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 8.8e-81 305.4 570 41.8
VMungo0720G2747 Vigna mungo HOM05D003636 ORTHO05D005160 8.8e-81 305.4 548 42.9
Eucgr.G02714 Eucalyptus grandis HOM05D003636 ORTHO05D005160 1.5e-80 304.7 422 44.5
Hma1.2p1_1798F.1_g302870 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 7.4e-80 302.4 578 42.0
PGR142G0130 Punica granatum HOM05D003636 ORTHO05D005160 7.4e-80 302.4 395 48.6
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 2.2e-79 300.8 401 46.9
Actinidia05462 Actinidia chinensis HOM05D003636 ORTHO05D005160 2.8e-79 300.4 496 43.3
MD16G1209600 Malus domestica HOM05D003636 ORTHO05D005160 2.8e-79 300.4 569 40.2
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 8.2e-79 298.9 467 43.5
TPR.G13854 Trifolium pratense HOM05D003636 ORTHO05D005160 8.2e-79 298.9 398 46.2
Peaxi162Scf00813g00221 Petunia axillaris HOM05D003636 ORTHO05D005160 1.1e-78 298.5 555 42.3
Cc03_g04930 Coffea canephora HOM05D003636 ORTHO05D005160 1.8e-78 297.7 565 43.2
MELO3C015028.2 Cucumis melo HOM05D003636 ORTHO05D005160 1.8e-78 297.7 569 39.9
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 1.8e-78 297.7 376 47.9
MBI11_g20311_MAGBIO Magnolia biondii HOM05D003636 ORTHO05D005160 2.4e-78 297.4 606 41.3
Oeu002605.1 Olea europaea HOM05D003636 ORTHO05D005160 3.1e-78 297.0 402 46.0
SalBow2G0018 Salvia bowleyana HOM05D003636 ORTHO05D005160 7.0e-78 295.8 566 41.5
BcaB07g31117 Brassica carinata HOM05D003636 ORTHO05D005160 1.2e-77 295.0 375 46.4
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 2.0e-77 294.3 388 46.9
PGSC0003DMG400015117 Solanum tuberosum HOM05D003636 ORTHO05D005160 2.6e-77 293.9 388 47.4
Solyc09g083420.3 Solanum lycopersicum HOM05D003636 ORTHO05D005160 1.0e-76 292.0 387 47.5
FvH4_4g02820 Fragaria vesca HOM05D003636 ORTHO05D005160 2.2e-76 290.8 543 43.8
Carub.0002s0788 Capsella rubella HOM05D003636 ORTHO05D005160 2.9e-76 290.4 457 43.1
MSTRG.4105 Avicennia marina HOM05D003636 ORTHO05D005160 5.0e-76 289.7 567 39.9
CsaV3_5G014730 Cucumis sativus L. HOM05D003636 ORTHO05D005160 5.0e-76 289.7 397 44.3
AL1G65900 Arabidopsis lyrata HOM05D003636 ORTHO05D005160 6.5e-76 289.3 389 45.5
Aa31LG2G11570 Aethionema arabicum HOM05D003636 ORTHO05D005160 8.5e-76 288.9 379 46.4
SGA_v2.0_scaffold101G29798 Striga asiatica HOM05D003636 ORTHO05D005160 1.4e-75 288.1 552 42.8
DCAR_024229 Daucus carota HOM05D003636 ORTHO05D005160 4.2e-75 286.6 531 40.1
Lj2A972G23 Lonicera japonica HOM05D003636 ORTHO05D005160 4.2e-75 286.6 567 40.2
Sed0019602 Sechium edule HOM05D003636 ORTHO05D005160 4.2e-75 286.6 554 36.8
AT1G56290 Arabidopsis thaliana HOM05D003636 ORTHO05D005160 9.4e-75 285.4 390 45.9
CAN.G1007.10 Capsicum annuum HOM05D003636 ORTHO05D005160 9.4e-75 285.4 382 47.6
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 1.2e-74 285.0 587 39.4
Sopen09g032360 Solanum pennellii HOM05D003636 ORTHO05D005160 1.2e-74 285.0 574 41.1
C09p24190 Brassica napus HOM05D003636 ORTHO05D005160 2.7e-74 283.9 373 45.8
A09p19180 Brassica napus HOM05D003636 ORTHO05D005160 3.6e-74 283.5 377 46.2
FAN17G1850 Fragaria x ananassa HOM05D003636 ORTHO05D005160 4.7e-74 283.1 543 43.3
Thhalv10023321m.g Eutrema salsugineum HOM05D003636 ORTHO05D005160 6.1e-74 282.7 393 45.0
Nitab4.5_0000525g0280 Nicotiana tabacum HOM05D003636 ORTHO05D005160 8.0e-74 282.3 400 43.8
Ca_11090_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 1.0e-73 282.0 372 47.8
Nitab4.5_0001418g0070 Nicotiana tabacum HOM05D003636 ORTHO05D005160 1.8e-73 281.2 409 42.8
CSS0043760 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 6.7e-73 279.3 379 47.5
BcaC04g22040 Brassica carinata HOM05D003636 ORTHO05D005160 8.8e-73 278.9 375 45.6
ATR0665G579 Amborella trichopoda HOM05D003636 ORTHO05D005160 1.5e-72 278.1 384 44.5
Os03g0740700 Oryza sativa ssp. japonica HOM05D003636 ORTHO05D005160 2.0e-72 277.7 390 45.9
CSS0023771 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 4.8e-71 273.1 348 48.6
CSS0034908 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.1e-70 271.9 350 48.0
Cc01_g03130 Coffea canephora HOM05D003636 ORTHO05D005160 4.1e-70 270.0 384 46.4
CSS0030608 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 2.0e-69 267.7 334 49.7
CDE06G0563 Ceratophyllum demersum HOM05D003636 ORTHO05D005160 3.8e-68 263.5 377 43.0
PSO017G1763 Papaver somniferum HOM05D003636 ORTHO05D005160 6.5e-68 262.7 397 43.1
PSO170G0718 Papaver somniferum HOM05D003636 ORTHO05D005160 8.5e-68 262.3 399 43.6
CSS0010332 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.5e-67 261.5 339 49.0
Lsat_1_v5_gn_5_72980 Lactuca sativa HOM05D003636 ORTHO05D005160 1.9e-67 261.2 388 44.8
ClCG09G021970 Citrullus lanatus HOM05D003636 ORTHO05D005160 3.6e-66 256.9 493 38.3
Rhsim02G0033400 Rhododendron simsii HOM05D003636 ORTHO05D005160 1.4e-65 255.0 372 43.8
HanXRQChr06g0181471 Helianthus annuus HOM05D003636 ORTHO05D005160 1.8e-65 254.6 395 44.1
Zm00001eb056720 Zea mays HOM05D003636 ORTHO05D005160 6.8e-65 252.7 379 43.0
ECA233G4087 Erigeron canadensis HOM05D003636 ORTHO05D005160 1.3e-55 221.9 561 33.9
SEGI_36314 Sequoiadendron giganteum HOM05D003636 ORTHO05D005160 2.8e-55 220.7 380 41.1
Ciclev10004498m.g Citrus clementina HOM05D003636 ORTHO05D005160 1.7e-52 211.5 345 41.2
Psat2g188720 Pisum sativum HOM05D003636 ORTHO05D005160 1.0e-49 202.2 276 47.5
unitig_736.g22445 Utricularia gibba HOM05D003636 ORTHO05D013299 3.1e-41 174.1 320 41.2
Rhsim07G0057600 Rhododendron simsii HOM05D003636 ORTHO05D005160 6.8e-41 172.9 379 35.4
CARHR172220 Cardamine hirsuta HOM05D003636 ORTHO05D005160 6.4e-39 166.4 304 42.8
AUR62031665 Chenopodium quinoa HOM05D003636 ORTHO05D013299 1.4e-38 165.2 115 72.2
AUR62032924 Chenopodium quinoa HOM05D003636 ORTHO05D013299 2.4e-38 164.5 114 73.7
AUR62025056 Chenopodium quinoa HOM05D003636 ORTHO05D013299 3.2e-38 164.1 115 71.3
Psat2g188360 Pisum sativum HOM05D003636 ORTHO05D005160 6.0e-37 159.8 267 39.3
HPP92_018389 Vanilla planifolia HOM05D003636 ORTHO05D013299 2.8e-34 151.0 342 36.0
Psat0s986g0040 Pisum sativum HOM05D003636 ORTHO05D005160 2.3e-33 147.9 166 52.4
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 4.0e-33 147.1 218 41.3
Thecc.05G005400 Theobroma cacao HOM05D003636 ORTHO05D005160 2.0e-32 144.8 240 38.8
TAR633G2776 Trochodendron aralioides HOM05D003636 ORTHO05D013299 7.5e-32 142.9 116 61.2
Mapoly0080s0020 Marchantia polymorpha HOM05D003636 ORTHO05D005160 1.9e-30 138.3 498 30.7
RhsimUnG0026900 Rhododendron simsii HOM05D003636 ORTHO05D013299 3.5e-29 134.0 122 57.4
Pp3c6_28790 Physcomitrium patens HOM05D003636 ORTHO05D005160 6.0e-29 133.3 436 30.0
ATR0691G029 Amborella trichopoda HOM05D003636 ORTHO05D026550 3.9e-28 130.6 252 38.1
Dinv02719 Davidia involucrata HOM05D003636 ORTHO05D005160 5.6e-27 126.7 213 39.4
Dinv00242 Davidia involucrata HOM05D003636 ORTHO05D005160 2.1e-26 124.8 213 39.4
unitig_736.g22446 Utricularia gibba HOM05D003636 ORTHO05D005160 1.4e-25 122.1 200 41.0
HanXRQChr09g0258341 Helianthus annuus HOM05D003636 ORTHO05D005160 8.9e-25 119.4 201 40.8
VMungo0331G1464 Vigna mungo HOM05D003636 ORTHO05D013299 1.1e-22 112.5 107 56.1
Duzib138G1962 Durio zibethinus HOM05D003636 ORTHO05D005160 7.1e-22 109.8 100 60.0
SMO356G0642 Selaginella moellendorffii HOM05D003636 ORTHO05D005160 1.6e-21 108.6 247 32.8
Hund02552 Selenicereus undatus HOM05D003636 ORTHO05D005160 1.3e-20 105.5 226 33.2
Nitab4.5_0000026g0370 Nicotiana tabacum HOM05D003636 ORTHO05D005160 3.6e-18 97.4 207 36.7
arahy.Tifrunner.gnm1.ann1.6T7UPN Arachis hypogaea HOM05D003636 ORTHO05D005832 8.1e-18 96.3 87 58.6
Hund11200 Selenicereus undatus HOM05D003636 ORTHO05D005160 4.0e-17 94.0 221 31.2
Ah.09g223840 Amaranthus hybridus HOM05D003636 ORTHO05D061865 5.2e-17 93.6 136 69.1
Rhsim03G0241700 Rhododendron simsii HOM05D003636 ORTHO05D013299 8.9e-17 92.8 207 38.2
Haze_21469 Corylus avellana HOM05D003636 ORTHO05D005160 3.4e-16 90.9 227 34.8
CBR_g41119 Chara braunii HOM05D003636 ORTHO05D005160 2.9e-15 87.8 348 34.5
Hma1.2p1_2670F.1_g326620 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 1.6e-13 82.0 128 39.8
RhsimUnG0006600 Rhododendron simsii HOM05D003636 ORTHO05D013299 1.6e-13 82.0 167 38.3
RhsimUnG0174100 Rhododendron simsii HOM05D003636 ORTHO05D013299 1.6e-13 82.0 53 73.6
MELO3C029178.2 Cucumis melo HOM05D003636 ORTHO05D005160 3.5e-13 80.9 203 30.0
Cre17.g741550 Chlamydomonas reinhardtii HOM05D003636 ORTHO05D005160 2.3e-12 78.2 126 38.1
Ca_11084_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 1.1e-11 75.9 116 44.0
Ca_11092_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 3.3e-11 74.3 113 44.2
Ca_14184_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 1.6e-10 72.0 198 32.8
HPP92_018388 Vanilla planifolia HOM05D003636 ORTHO05D005160 5.8e-08 63.5 123 35.0
TAR633G1121 Trochodendron aralioides HOM05D003636 ORTHO05D026550 1.3e-07 62.4 103 43.7
Hund13040 Selenicereus undatus HOM05D003636 ORTHO05D005160 8.4e-07 59.7 144 30.6
Dinv44638 Davidia involucrata HOM05D003636 ORTHO05D005160 1.9e-06 58.5 154 33.8
THA.LOC104823120 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 2.4e-06 58.2 66 47.0


User provided reference genes

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