Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g036850 Amaranthus hybridus HOM05D007699 ORTHO05D009796 1.0e-58 230.3 158 100.0
EL10Ac6g13624 Beta vulgaris HOM05D007699 ORTHO05D009796 1.5e-14 83.6 53 77.4
Pp3c10_15080 Physcomitrium patens HOM05D007699 ORTHO05D009796 7.5e-14 81.3 46 84.8
Pp3c10_15084 Physcomitrium patens HOM05D007699 ORTHO05D009796 7.5e-14 81.3 46 84.8
Pp3s1006_30 Physcomitrium patens HOM05D007699 ORTHO05D009796 7.5e-14 81.3 46 84.8
Pp3s638_22 Physcomitrium patens HOM05D007699 ORTHO05D009796 7.5e-14 81.3 46 84.8
Pp3s677_10 Physcomitrium patens HOM05D007699 ORTHO05D009796 7.5e-14 81.3 46 84.8
Pp3s677_11 Physcomitrium patens HOM05D007699 ORTHO05D009796 7.5e-14 81.3 46 84.8
Ciclev10018283m.g Citrus clementina HOM05D007699 ORTHO05D009796 2.2e-13 79.7 47 83.0
EL10Ac6g13349 Beta vulgaris HOM05D007699 ORTHO05D009796 2.9e-13 79.3 36 97.2
EL10Ac6g13683 Beta vulgaris HOM05D007699 ORTHO05D009796 2.9e-13 79.3 36 97.2
GSVIVG01037330001 Vitis vinifera HOM05D007699 ORTHO05D009796 3.7e-13 79.0 42 90.5
FAN08G2016 Fragaria x ananassa HOM05D007699 ORTHO05D009796 6.4e-13 78.2 41 87.8
EL10Ac6g13685 Beta vulgaris HOM05D007699 ORTHO05D009796 8.3e-13 77.8 35 100.0
Pp3c15_10810 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.3e-13 77.8 35 100.0
Pp3c15_10813 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.3e-13 77.8 35 100.0
Pp3c15_10820 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.3e-13 77.8 35 100.0
Pp3c1_6540 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.3e-13 77.8 35 100.0
Potri.011G103301 Populus trichocarpa HOM05D007699 ORTHO05D009796 8.3e-13 77.8 48 79.2
FAN18G1300 Fragaria x ananassa HOM05D005738 ORTHO05D007135 1.1e-12 77.4 41 85.4
FAN18G3749 Fragaria x ananassa HOM05D005738 ORTHO05D007135 1.1e-12 77.4 41 85.4
TPR.G12299 Trifolium pratense HOM05D007699 ORTHO05D009796 1.1e-12 77.4 43 81.4
A05p18230 Brassica napus HOM05D007699 ORTHO05D009796 1.4e-12 77.0 51 70.6
CARHR185520 Cardamine hirsuta HOM05D007699 ORTHO05D009796 1.4e-12 77.0 44 79.5
Phvul.008G062500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 1.4e-12 77.0 41 85.4
Pp3s677_20 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.9e-12 76.6 40 87.5
Potri.011G103401 Populus trichocarpa HOM05D007699 ORTHO05D009796 1.9e-12 76.6 49 73.5
C03p91420 Brassica napus HOM05D007699 ORTHO05D009796 2.4e-12 76.3 39 87.2
CARHR088640 Cardamine hirsuta HOM05D007699 ORTHO05D009796 2.4e-12 76.3 39 87.2
Phvul.001G084100 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.4e-12 76.3 41 82.9
Pp3c24_6960 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.4e-12 76.3 39 89.7
Pp3c24_6961 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.4e-12 76.3 39 89.7
EL10Ac6g13684 Beta vulgaris HOM05D007699 ORTHO05D009796 4.1e-12 75.5 34 100.0
FvH4_3g13700 Fragaria vesca HOM05D007699 ORTHO05D009796 4.1e-12 75.5 42 83.3
FAN11G1327 Fragaria x ananassa HOM05D007699 ORTHO05D009796 4.1e-12 75.5 42 83.3
Hma1.2p1_0886F.1_g232660 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 5.4e-12 75.1 40 87.5
Hma1.2p1_0886F.1_g232685 Hydrangea macrophylla HOM05D007699 ORTHO05D009796 5.4e-12 75.1 40 87.5
Medtr3g084270 Medicago truncatula HOM05D007699 ORTHO05D009796 5.4e-12 75.1 40 85.0
Solyc12g056290.2 Solanum lycopersicum HOM05D007699 ORTHO05D009796 5.4e-12 75.1 35 97.1
TPR.G38695 Trifolium pratense HOM05D000020 ORTHO05D000543 5.4e-12 75.1 49 73.5
arahy.Tifrunner.gnm1.ann1.3J1SD9 Arachis hypogaea HOM05D007699 ORTHO05D009796 7.1e-12 74.7 38 89.5
Carub.0003s1340 Capsella rubella HOM05D007699 ORTHO05D009796 7.1e-12 74.7 36 91.7
FAN11G3494 Fragaria x ananassa HOM05D007699 ORTHO05D009796 7.1e-12 74.7 41 85.4
Nn7g36904 Nelumbo nucifera HOM05D007699 ORTHO05D009796 7.1e-12 74.7 46 76.1
EL10Ac6g13623 Beta vulgaris HOM05D007699 ORTHO05D009796 9.2e-12 74.3 39 87.2
FAN13G3199 Fragaria x ananassa HOM05D007699 ORTHO05D009796 9.2e-12 74.3 42 81.0
Sopen12g028800 Solanum pennellii HOM05D007699 ORTHO05D009796 9.2e-12 74.3 45 82.2
arahy.Tifrunner.gnm1.ann1.3C01L3 Arachis hypogaea HOM05D007699 ORTHO05D009796 1.2e-11 73.9 36 91.7
Mapoly0086s0020 Marchantia polymorpha HOM05D007699 ORTHO05D009796 1.2e-11 73.9 36 91.7
Medtr3g105890 Medicago truncatula HOM05D007699 ORTHO05D009796 1.2e-11 73.9 36 91.7
Nitab4.5_0005352g0040 Nicotiana tabacum HOM05D007699 ORTHO05D009796 1.2e-11 73.9 38 89.5
Prupe.7G080000 Prunus persica HOM05D007699 ORTHO05D009796 1.2e-11 73.9 36 91.7
QL03p053410 Quercus lobata HOM05D007699 ORTHO05D009796 1.2e-11 73.9 36 91.7
Migut.J00839 Erythranthe guttata HOM05D007699 ORTHO05D009796 2.1e-11 73.2 35 94.3
FAN08G0324 Fragaria x ananassa HOM05D007699 ORTHO05D009796 2.1e-11 73.2 50 72.0
Gohir.D06G068332 Gossypium hirsutum HOM05D007699 ORTHO05D009796 2.1e-11 73.2 36 91.7
Manes.11G145650 Manihot esculenta HOM05D007699 ORTHO05D009796 2.1e-11 73.2 35 94.3
Phvul.001G066900 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 2.1e-11 73.2 35 94.3
Prupe.7G069600 Prunus persica HOM05D007699 ORTHO05D009796 2.1e-11 73.2 35 94.3
SHI29091 Sapria himalayana HOM05D007699 ORTHO05D009796 2.1e-11 73.2 33 100.0
Pp3c21_2000 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.7e-11 72.8 38 86.8
Pp3c21_2022 Physcomitrium patens HOM05D007699 ORTHO05D009796 2.7e-11 72.8 38 86.8
Mapoly0020s0143 Marchantia polymorpha HOM05D007699 ORTHO05D009796 3.5e-11 72.4 36 88.9
EL10Ac6g13625 Beta vulgaris HOM05D007699 ORTHO05D009796 4.6e-11 72.0 49 71.4
Phvul.001G066700 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 6.0e-11 71.6 32 96.9
TPR.G32688 Trifolium pratense HOM05D007699 ORTHO05D009796 6.0e-11 71.6 35 91.4
Pp3c1_26810 Physcomitrium patens HOM05D007699 ORTHO05D009796 7.8e-11 71.2 39 84.6
Gorai.010G079800 Gossypium raimondii HOM05D007699 ORTHO05D009796 5.1e-10 68.6 52 65.4
EL10Ac6g13621 Beta vulgaris HOM05D007699 ORTHO05D009796 6.6e-10 68.2 41 78.0
Thecc.10G037500 Theobroma cacao HOM05D007699 ORTHO05D009796 6.6e-10 68.2 38 84.2
Pp3c1_26830 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.6e-10 67.8 32 93.8
Pp3c24_16090 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.5e-09 67.0 43 74.4
Pp3c24_16091 Physcomitrium patens HOM05D007699 ORTHO05D009796 1.5e-09 67.0 43 74.4
Potri.005G055534 Populus trichocarpa HOM05D007699 ORTHO05D009796 1.9e-09 66.6 37 81.1
Gorai.011G262200 Gossypium raimondii HOM05D007699 ORTHO05D009796 2.5e-09 66.2 37 81.1
Phvul.001G090500 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 5.6e-09 65.1 36 83.3
Potri.005G055667 Populus trichocarpa HOM05D007699 ORTHO05D009796 5.6e-09 65.1 32 93.8
Medtr8g461450 Medicago truncatula HOM05D007699 ORTHO05D009796 1.2e-08 63.9 32 90.6
Gorai.011G262800 Gossypium raimondii HOM05D007699 ORTHO05D009796 2.8e-08 62.8 39 79.5
Medtr3g108610 Medicago truncatula HOM05D007699 ORTHO05D009796 2.8e-08 62.8 36 80.6
CSS0021910 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 3.6e-08 62.4 43 72.1
CSS0023756 Camellia sinensis var. sinensis HOM05D007699 ORTHO05D009796 3.6e-08 62.4 37 78.4
Carub.0006s3371 Capsella rubella HOM05D007699 ORTHO05D009796 3.6e-08 62.4 31 90.3
Glyma.19G099100 Glycine max HOM05D007699 ORTHO05D009796 3.6e-08 62.4 31 90.3
Gohir.A11G277350 Gossypium hirsutum HOM05D007699 ORTHO05D009796 3.6e-08 62.4 31 90.3
FAN11G3758 Fragaria x ananassa HOM05D007699 ORTHO05D009796 8.1e-08 61.2 30 93.3
FAN18G1871 Fragaria x ananassa HOM05D007699 ORTHO05D009796 8.1e-08 61.2 30 93.3
Phvul.009G076400 Phaseolus vulgaris HOM05D007699 ORTHO05D009796 8.1e-08 61.2 31 87.1
Pp3c27_1930 Physcomitrium patens HOM05D007699 ORTHO05D009796 8.1e-08 61.2 39 71.8
PGSC0003DMG400029597 Solanum tuberosum HOM05D000312 ORTHO05D000221 8.1e-08 61.2 30 93.3
SHI28974 Sapria himalayana HOM05D007699 ORTHO05D009796 1.8e-07 60.1 37 73.0
arahy.Tifrunner.gnm1.ann1.C3EWW9 Arachis hypogaea HOM05D007699 ORTHO05D009796 3.1e-07 59.3 31 87.1
Medtr2g101670 Medicago truncatula HOM05D007699 ORTHO05D009796 7.6e-06 54.7 33 75.8


User provided reference genes

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