Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g036610 Amaranthus hybridus HOM05D007537 ORTHO05D009602 7.8e-193 677.2 397 100.0
AUR62012265 Chenopodium quinoa HOM05D007537 ORTHO05D009602 2.8e-102 376.3 436 56.4
AUR62022900 Chenopodium quinoa HOM05D007537 ORTHO05D009602 6.3e-102 375.2 386 61.1
Hund13875 Selenicereus undatus HOM05D007537 ORTHO05D009602 5.4e-93 345.5 416 51.4
COL.COLO4_25746 Corchorus olitorius HOM05D007537 ORTHO05D009602 1.6e-84 317.4 402 50.2
vmacro10037 Vaccinium macrocarpon HOM05D007537 ORTHO05D009602 4.3e-82 309.3 389 50.9
Actinidia13942 Actinidia chinensis HOM05D007537 ORTHO05D009602 2.8e-81 306.6 392 48.7
CSS0047961 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 4.7e-81 305.8 395 49.9
CSS0034530 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 6.2e-81 305.4 402 48.5
CSS0001440 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 1.1e-80 304.7 395 49.9
EL10Ac2g04847 Beta vulgaris HOM05D007537 ORTHO05D009602 7.6e-79 298.5 409 49.6
Duzib114G0965 Durio zibethinus HOM05D007537 ORTHO05D009602 1.7e-78 297.4 395 46.3
Thecc.10G014900 Theobroma cacao HOM05D007537 ORTHO05D009602 8.3e-78 295.0 397 46.1
Rhsim09G0177700 Rhododendron simsii HOM05D007537 ORTHO05D009602 9.2e-77 291.6 384 49.5
Nitab4.5_0000797g0160 Nicotiana tabacum HOM05D007537 ORTHO05D009602 2.7e-76 290.0 411 47.9
Nitab4.5_0008231g0020 Nicotiana tabacum HOM05D007537 ORTHO05D009602 2.7e-76 290.0 410 46.8
Prupe.2G251400 Prunus persica HOM05D007537 ORTHO05D009602 7.8e-76 288.5 400 49.5
TAR633G2636 Trochodendron aralioides HOM05D007537 ORTHO05D009602 6.6e-75 285.4 400 47.8
arahy.Tifrunner.gnm1.ann1.EU49LP Arachis hypogaea HOM05D007537 ORTHO05D009602 1.5e-74 284.3 412 47.1
PSO384G1417 Papaver somniferum HOM05D007537 ORTHO05D009602 1.5e-74 284.3 428 43.2
FAN10G0956 Fragaria x ananassa HOM05D007537 ORTHO05D009602 1.9e-74 283.9 395 46.3
Sabra08G0051400 Salix brachista HOM05D007537 ORTHO05D009602 2.5e-74 283.5 376 47.3
FAN06G1236 Fragaria x ananassa HOM05D007537 ORTHO05D009602 4.3e-74 282.7 396 45.7
FAN03G1922 Fragaria x ananassa HOM05D007537 ORTHO05D009602 9.6e-74 281.6 392 46.2
FvH4_7g24610 Fragaria vesca HOM05D007537 ORTHO05D009602 1.2e-73 281.2 397 47.4
Nn2g10869 Nelumbo nucifera HOM05D007537 ORTHO05D009602 1.2e-73 281.2 398 49.5
FAN01G2979 Fragaria x ananassa HOM05D007537 ORTHO05D009602 3.6e-73 279.6 395 46.3
arahy.Tifrunner.gnm1.ann1.QLS93X Arachis hypogaea HOM05D007537 ORTHO05D009602 1.8e-72 277.3 422 45.3
Cc02_g06360 Coffea canephora HOM05D007537 ORTHO05D009602 9.9e-71 271.6 403 44.7
DCAR_011821 Daucus carota HOM05D007537 ORTHO05D009602 1.7e-70 270.8 369 47.4
Manes.07G130900 Manihot esculenta HOM05D007537 ORTHO05D009602 3.8e-70 269.6 398 45.7
Aqoxy2G00863 Aquilegia oxysepala HOM05D007537 ORTHO05D009602 6.4e-70 268.9 402 43.3
Potri.008G069800 Populus trichocarpa HOM05D007537 ORTHO05D009602 8.4e-70 268.5 403 45.2
Thhalv10020993m.g Eutrema salsugineum HOM05D007537 ORTHO05D009602 1.1e-69 268.1 403 44.7
LjContig00357g0012610 Lotus japonicus HOM05D007537 ORTHO05D009602 1.1e-69 268.1 370 46.8
Glyma.02G257900 Glycine max HOM05D007537 ORTHO05D009602 1.4e-69 267.7 381 46.7
Peaxi162Scf00284g01051 Petunia axillaris HOM05D007537 ORTHO05D009602 1.4e-69 267.7 407 44.0
Cfa001307 Carpinus fangiana HOM05D007537 ORTHO05D009602 1.6e-68 264.2 397 44.6
RcHm_v2.0_Chr1g0370441 Rosa chinensis HOM05D007537 ORTHO05D009602 4.6e-68 262.7 393 44.8
BcaC09g48157 Brassica carinata HOM05D007537 ORTHO05D009602 6.0e-68 262.3 400 44.2
Gohir.D13G016000 Gossypium hirsutum HOM05D007537 ORTHO05D009602 7.8e-68 261.9 398 46.5
BolC1t05333H Brassica oleracea HOM05D007537 ORTHO05D009602 1.0e-67 261.5 400 44.0
CiPaw.01G299800 Carya illinoinensis HOM05D007537 ORTHO05D009602 1.0e-67 261.5 401 43.6
Solyc06g051360.3 Solanum lycopersicum HOM05D007537 ORTHO05D009602 3.0e-67 260.0 408 42.9
Medtr5g082850 Medicago truncatula HOM05D007537 ORTHO05D009602 5.1e-67 259.2 362 44.5
PGR044G1397 Punica granatum HOM05D007537 ORTHO05D009602 5.1e-67 259.2 399 44.1
VMungo0647G0018 Vigna mungo HOM05D007537 ORTHO05D009602 5.1e-67 259.2 397 41.8
Ca_05971_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 6.6e-67 258.8 400 45.2
Ca_05972_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 6.6e-67 258.8 400 45.2
HanXRQChr08g0221761 Helianthus annuus HOM05D007537 ORTHO05D009602 1.1e-66 258.1 308 52.6
Sp3g09450 Schrenkiella parvula HOM05D007537 ORTHO05D009602 1.9e-66 257.3 401 44.4
Sopen06g017350 Solanum pennellii HOM05D007537 ORTHO05D009602 1.9e-66 257.3 408 42.6
Ciclev10031789m.g Citrus clementina HOM05D007537 ORTHO05D009602 2.5e-66 256.9 404 42.6
CARHR085730 Cardamine hirsuta HOM05D007537 ORTHO05D009602 3.3e-66 256.5 408 43.4
BcaB04g21148 Brassica carinata HOM05D007537 ORTHO05D009602 2.1e-65 253.8 400 43.0
Aa31LG3G4310 Aethionema arabicum HOM05D007537 ORTHO05D009602 6.2e-65 252.3 404 44.8
ClCG07G004310 Citrullus lanatus HOM05D007537 ORTHO05D009602 8.1e-65 251.9 401 42.1
ECA233G1171 Erigeron canadensis HOM05D007537 ORTHO05D009602 1.8e-64 250.8 391 40.4
MSTRG.27338 Avicennia marina HOM05D007537 ORTHO05D009602 5.3e-64 249.2 401 46.1
Phvul.008G223100 Phaseolus vulgaris HOM05D007537 ORTHO05D009602 9.0e-64 248.4 398 44.2
Lsat_1_v5_gn_8_12620 Lactuca sativa HOM05D007537 ORTHO05D009602 1.2e-63 248.1 310 49.7
Haze_17238 Corylus avellana HOM05D007537 ORTHO05D009602 1.5e-63 247.7 398 44.5
PGSC0003DMG400024236 Solanum tuberosum HOM05D007537 ORTHO05D009602 7.6e-63 245.4 410 42.4
Lalb_Chr04g0250531 Lupinus albus HOM05D007537 ORTHO05D009602 4.9e-62 242.7 402 45.3
Gorai.013G017500 Gossypium raimondii HOM05D007537 ORTHO05D009602 6.4e-62 242.3 355 46.8
THA.LOC104823184 Tarenaya hassleriana HOM05D007537 ORTHO05D009602 6.4e-62 242.3 371 45.0
GSVIVG01032801001 Vitis vinifera HOM05D007537 ORTHO05D009602 7.1e-61 238.8 315 48.9
Psat2g031640 Pisum sativum HOM05D007537 ORTHO05D009602 3.5e-60 236.5 394 41.1
AL3G22670 Arabidopsis lyrata HOM05D007537 ORTHO05D009602 8.7e-59 231.9 407 43.2
Sed0013636 Sechium edule HOM05D007537 ORTHO05D009602 1.5e-58 231.1 400 42.0
BraA01t04198Z Brassica rapa HOM05D007537 ORTHO05D009602 4.3e-58 229.6 400 40.2
AT3G11150 Arabidopsis thaliana HOM05D007537 ORTHO05D009602 1.3e-57 228.0 385 43.9
Gohir.A13G014800 Gossypium hirsutum HOM05D007537 ORTHO05D009602 1.3e-57 228.0 304 50.3
SGA_v2.0_scaffold44G16701 Striga asiatica HOM05D007537 ORTHO05D009602 9.0e-56 221.9 403 37.7
Eucgr.J00197 Eucalyptus grandis HOM05D007537 ORTHO05D009602 4.5e-55 219.5 310 47.4
Carub.0003s1045 Capsella rubella HOM05D007537 ORTHO05D009602 9.9e-55 218.4 418 39.5
Migut.F00693 Erythranthe guttata HOM05D007537 ORTHO05D009602 8.4e-54 215.3 318 46.5
MBI03_g40958_MAGBIO Magnolia biondii HOM05D007537 ORTHO05D009602 2.8e-49 200.3 358 40.8
TPR.G38413 Trifolium pratense HOM05D007537 ORTHO05D009602 8.1e-49 198.7 353 40.5
Sc10g0002440 Simmondsia chinensis HOM05D007537 ORTHO05D009602 1.1e-45 188.3 396 39.1
BcaB04g21146 Brassica carinata HOM05D007537 ORTHO05D009602 9.3e-45 185.3 285 44.2
MELO3C026792.2 Cucumis melo HOM05D007537 ORTHO05D009602 1.9e-42 177.6 287 42.5
CsaV3_5G010250 Cucumis sativus L. HOM05D007537 ORTHO05D009602 1.9e-42 177.6 286 42.3
Dinv21742 Davidia involucrata HOM05D007537 ORTHO05D009602 6.2e-41 172.6 216 47.7
Oeu004692.1 Olea europaea HOM05D007537 ORTHO05D009602 1.3e-30 138.3 222 50.5
Atru.chr12.52 Acer truncatum HOM05D007537 ORTHO05D009602 2.1e-28 131.0 308 33.4
Glyma.14G058602 Glycine max HOM05D007537 ORTHO05D009602 8.8e-27 125.6 199 45.2
CSS0044280 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 1.3e-25 121.7 126 53.2
HPP92_007582 Vanilla planifolia HOM05D007537 ORTHO05D009602 6.9e-24 115.9 394 31.7
ATR0681G199 Amborella trichopoda HOM05D007537 ORTHO05D009602 2.5e-21 107.5 406 31.0
MD01G1154400 Malus domestica HOM05D007537 ORTHO05D009602 1.0e-19 102.1 109 52.3
Os01g0830500 Oryza sativa ssp. japonica HOM05D007537 ORTHO05D009602 2.4e-16 90.9 379 30.3
SEGI_28444 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 9.4e-13 79.0 417 28.5
SEGI_29994 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 9.4e-13 79.0 417 28.5
MD01G1154300 Malus domestica HOM05D007537 ORTHO05D009602 5.2e-11 73.2 90 56.7
Oeu004690.1 Olea europaea HOM05D007537 ORTHO05D009602 8.8e-11 72.4 116 41.4
SEGI_01266 Sequoiadendron giganteum HOM05D007537 ORTHO05D009602 7.0e-08 62.8 395 24.6
Gorai.010G166600 Gossypium raimondii HOM05D000858 ORTHO05D001578 4.5e-07 60.1 229 27.5
SEGI_02808 Sequoiadendron giganteum HOM05D000018 ORTHO05D007339 4.5e-07 60.1 218 27.1
MBI10_g30415_MAGBIO Magnolia biondii HOM05D000858 ORTHO05D001578 1.7e-06 58.2 217 26.3
Gohir.A06G137600 Gossypium hirsutum HOM05D000858 ORTHO05D001578 2.9e-06 57.4 229 27.1
Gohir.A06G196900 Gossypium hirsutum HOM05D000858 ORTHO05D001578 2.9e-06 57.4 227 26.4
Gohir.D06G204400 Gossypium hirsutum HOM05D000858 ORTHO05D001578 2.9e-06 57.4 227 26.9
Gorai.010G238400 Gossypium raimondii HOM05D000858 ORTHO05D001578 2.9e-06 57.4 227 26.9
MSTRG.15014 Avicennia marina HOM05D000858 ORTHO05D001578 3.8e-06 57.0 222 25.2
Carub.0004s1622 Capsella rubella HOM05D000858 ORTHO05D001578 3.8e-06 57.0 222 26.6
SMO172G0001 Selaginella moellendorffii HOM05D000018 ORTHO05D001172 3.8e-06 57.0 219 23.7
Gorai.006G092800 Gossypium raimondii HOM05D000858 ORTHO05D001578 5.0e-06 56.6 211 25.1
Nitab4.5_0000662g0210 Nicotiana tabacum HOM05D000018 ORTHO05D010444 5.0e-06 56.6 207 23.2
SMO172G0177 Selaginella moellendorffii HOM05D000018 ORTHO05D010444 5.0e-06 56.6 214 22.9
AUR62011414 Chenopodium quinoa HOM05D000018 ORTHO05D001172 6.5e-06 56.2 225 28.0
SMO340G0103 Selaginella moellendorffii HOM05D000018 ORTHO05D010444 6.5e-06 56.2 213 22.1


User provided reference genes

Program Settings