Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 3.9e-312 1074.3 571 100.0
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 5.3e-243 844.3 464 88.6
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.4e-222 776.5 462 82.3
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 4.1e-219 765.0 461 81.8
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 2.7e-218 762.3 465 80.0
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 2.6e-173 612.8 480 65.6
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 6.2e-167 591.7 473 62.6
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 8.4e-164 581.3 470 61.7
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.9e-163 580.1 474 61.8
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.6e-162 577.0 469 60.8
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 2.1e-162 576.6 478 62.3
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 1.0e-161 574.3 482 61.2
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.3e-161 573.9 474 62.4
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 2.3e-161 573.2 473 60.7
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 3.9e-161 572.4 476 60.9
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 8.7e-161 571.2 473 62.8
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 1.5e-160 570.5 467 62.1
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 4.3e-160 568.9 472 60.2
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 5.6e-160 568.5 468 60.7
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 5.6e-160 568.5 476 60.3
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 7.3e-160 568.2 472 61.0
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 7.3e-160 568.2 482 60.6
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.3e-159 567.4 484 59.9
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.6e-159 567.0 464 62.5
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 2.8e-159 566.2 481 58.8
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 3.6e-159 565.8 472 60.0
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 3.6e-159 565.8 472 60.4
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 4.8e-159 565.5 475 61.3
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 8.1e-159 564.7 462 62.8
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.4e-158 563.9 475 58.9
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.8e-158 563.5 475 61.7
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.5e-157 560.5 475 60.2
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 1.5e-157 560.5 476 60.3
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 2.0e-157 560.1 473 60.9
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 5.8e-157 558.5 482 58.7
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 7.6e-157 558.1 462 61.7
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 9.9e-157 557.8 482 59.3
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.3e-156 557.4 470 60.2
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 1.3e-156 557.4 469 60.3
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.7e-156 557.0 476 58.0
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.2e-156 556.6 480 59.2
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.8e-156 555.8 470 60.0
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 3.8e-156 555.8 473 60.3
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 3.8e-156 555.8 474 59.7
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 4.9e-156 555.4 473 59.6
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.4e-156 555.1 474 59.5
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 8.4e-156 554.7 474 59.7
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 8.4e-156 554.7 477 59.7
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 8.4e-156 554.7 472 59.1
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.1e-155 554.3 470 59.4
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.4e-155 553.9 479 58.9
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 1.9e-155 553.5 474 59.3
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.2e-155 552.4 474 59.3
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.4e-155 552.0 470 59.6
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 9.3e-155 551.2 482 60.0
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.6e-154 550.4 471 59.7
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.3e-153 547.4 481 59.9
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 6.7e-153 545.0 475 58.3
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.5e-152 543.1 476 58.6
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 4.3e-152 542.3 469 58.2
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.4e-152 541.6 474 58.6
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 7.4e-152 541.6 466 56.9
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 2.1e-151 540.0 466 59.2
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 6.2e-151 538.5 476 58.2
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 4.0e-150 535.8 451 59.6
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 4.5e-149 532.3 469 58.0
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 1.4e-147 527.3 468 58.3
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.6e-146 523.9 469 56.7
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.1e-144 517.7 472 56.8
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 5.7e-144 515.4 475 55.4
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 4.8e-143 512.3 470 57.9
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 3.1e-142 509.6 458 55.5
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 1.3e-140 504.2 473 53.9
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.3e-137 494.2 480 53.3
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.3e-137 494.2 472 55.3
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 5.3e-134 482.3 488 51.0
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 5.3e-134 482.3 473 54.5
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.0e-133 480.3 472 52.1
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.3e-132 477.6 474 52.3
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.6e-130 469.5 405 59.8
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 3.6e-130 469.5 473 51.4
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 4.6e-130 469.2 469 52.5
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 1.0e-129 468.0 470 51.1
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 3.0e-129 466.5 468 51.7
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 3.3e-128 463.0 480 50.0
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 6.3e-127 458.8 477 49.9
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 6.3e-127 458.8 480 50.6
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 8.2e-127 458.4 474 50.2
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.4e-126 457.6 470 50.0
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.8e-126 457.2 470 49.6
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.4e-126 456.8 473 49.5
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 5.3e-126 455.7 474 50.2
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 9.1e-126 454.9 488 49.4
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.5e-125 454.1 443 51.9
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 3.4e-125 453.0 470 50.0
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 5.9e-125 452.2 483 48.4
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 5.9e-125 452.2 472 50.0
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 7.7e-125 451.8 388 56.2
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.9e-124 449.9 474 50.2
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.9e-124 449.9 466 50.6
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 6.5e-124 448.7 467 49.9
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 8.5e-124 448.4 468 49.1
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 8.5e-124 448.4 465 51.2
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 3.2e-123 446.4 468 49.1
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 4.2e-123 446.0 469 50.1
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 5.5e-123 445.7 468 49.6
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 7.2e-123 445.3 465 50.1
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 9.4e-123 444.9 467 49.7
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 2.1e-122 443.7 465 51.0
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 3.6e-122 443.0 467 49.3
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.8e-121 440.7 470 48.7
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 2.3e-121 440.3 468 48.1
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 2.3e-121 440.3 463 49.7
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 3.0e-121 439.9 468 48.1
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.0e-121 439.9 416 53.4
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 5.1e-121 439.1 467 48.6
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 5.1e-121 439.1 462 50.9
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.5e-120 437.6 470 47.9
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 2.0e-120 437.2 468 48.1
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 2.0e-120 437.2 468 48.1
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 2.0e-120 437.2 468 50.0
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 4.4e-120 436.0 468 50.0
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 4.4e-120 436.0 468 50.0
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 9.7e-120 434.9 479 47.4
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 1.7e-119 434.1 468 49.8
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 6.3e-119 432.2 315 66.7
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 6.3e-119 432.2 315 66.7
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.4e-118 431.0 463 49.9
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 1.6e-117 427.6 475 48.2
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 1.6e-117 427.6 482 45.9
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 3.5e-117 426.4 474 47.7
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 4.5e-117 426.0 470 49.4
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 7.7e-117 425.2 477 47.6
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 2.9e-116 423.3 480 46.7
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 3.8e-116 422.9 468 47.4
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 3.8e-116 422.9 468 47.4
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 8.5e-116 421.8 480 47.1
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 4.2e-115 419.5 468 47.4
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 1.2e-114 417.9 468 47.2
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 1.6e-114 417.5 484 47.1
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.0e-113 414.8 474 46.8
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.1e-112 411.4 482 46.3
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 9.7e-112 408.3 469 46.1
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 9.7e-112 408.3 437 47.4
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 2.8e-111 406.8 468 45.7
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 4.2e-107 392.9 424 47.9
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.1e-106 390.6 444 46.4
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.3e-95 354.8 438 44.1
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.9e-95 352.8 469 41.4
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.4e-94 349.4 480 41.5
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.0e-92 345.1 438 43.6
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 2.9e-87 327.0 467 41.1
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.3e-84 318.2 433 40.6
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 1.9e-75 287.7 354 43.8
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 4.0e-73 280.0 327 48.0
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.3e-67 260.4 341 41.1
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.8e-66 257.3 209 60.3
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 6.6e-60 236.1 204 61.8
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 4.0e-57 226.9 162 65.4
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-54 218.8 203 53.7
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 2.4e-54 217.6 203 53.2
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 1.7e-44 184.9 165 57.6
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 2.5e-43 181.0 226 46.0
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.5e-32 145.2 270 37.8
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 1.5e-24 118.6 124 46.0
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 1.1e-19 102.4 288 28.8
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 3.4e-16 90.9 124 41.1
Ah.05g173850 Amaranthus hybridus HOM05D004783 ORTHO05D005581 7.7e-16 89.7 97 55.7
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 1.0e-12 79.3 89 46.1
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 1.5e-11 75.5 91 45.1
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 3.1e-09 67.8 96 36.5
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 5.3e-09 67.0 154 31.8
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 9.1e-09 66.2 67 49.3


User provided reference genes

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