Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g035900 Amaranthus hybridus HOM05D002651 ORTHO05D002841 3.0e-116 421.8 200 100.0
AUR62012399 Chenopodium quinoa HOM05D002651 ORTHO05D002841 5.4e-49 198.4 152 64.5
EL10Ac2g04233 Beta vulgaris HOM05D002651 ORTHO05D002841 7.0e-49 198.0 156 63.5
AUR62031506 Chenopodium quinoa HOM05D002651 ORTHO05D002841 3.8e-47 192.2 157 61.8
Ah.16g104400 Amaranthus hybridus HOM05D002651 ORTHO05D002841 7.2e-46 188.0 160 59.4
Dinv30134 Davidia involucrata HOM05D002651 ORTHO05D002841 6.6e-15 85.1 162 38.3
CANSAT25G0322 Cannabis sativa HOM05D002651 ORTHO05D002841 7.3e-14 81.6 174 32.8
Hma1.2p1_0007F.1_g005330 Hydrangea macrophylla HOM05D002651 ORTHO05D002841 2.8e-13 79.7 139 40.3
Lsat_1_v5_gn_5_29640 Lactuca sativa HOM05D002651 ORTHO05D002841 4.7e-13 79.0 132 35.6
MBI04_g29337_MAGBIO Magnolia biondii HOM05D002651 ORTHO05D002841 1.1e-12 77.8 87 43.7
Cpa.g.sc954.3 Carica papaya HOM05D002651 ORTHO05D002841 1.8e-12 77.0 134 36.6
Ciclev10008661m.g Citrus clementina HOM05D002651 ORTHO05D002841 3.1e-12 76.3 123 40.7
Sc09g0008240 Simmondsia chinensis HOM05D002651 ORTHO05D002841 4.0e-12 75.9 115 43.5
BraA01t00571Z Brassica rapa HOM05D002651 ORTHO05D002841 6.8e-12 75.1 138 38.4
Dinv08646 Davidia involucrata HOM05D002651 ORTHO05D002841 1.2e-11 74.3 171 33.3
AUR62011156 Chenopodium quinoa HOM05D002651 ORTHO05D002841 1.5e-11 73.9 119 41.2
BcaC09g52012 Brassica carinata HOM05D002651 ORTHO05D002841 7.6e-11 71.6 138 36.2
BolC1t00662H Brassica oleracea HOM05D002651 ORTHO05D002841 7.6e-11 71.6 138 36.2
BcaNung05977 Brassica carinata HOM05D002651 ORTHO05D002841 9.9e-11 71.2 110 43.6
QL02p021642 Quercus lobata HOM05D002651 ORTHO05D002841 9.9e-11 71.2 146 33.6
CSS0024589 Camellia sinensis var. sinensis HOM05D002651 ORTHO05D002841 1.3e-10 70.9 119 39.5
ECA246G1383 Erigeron canadensis HOM05D002651 ORTHO05D002841 1.3e-10 70.9 156 34.6
COL.COLO4_18861 Corchorus olitorius HOM05D002651 ORTHO05D002841 1.7e-10 70.5 193 30.1
Manes.03G014300 Manihot esculenta HOM05D002651 ORTHO05D002841 1.7e-10 70.5 137 37.2
Manes.03G014400 Manihot esculenta HOM05D002651 ORTHO05D002841 1.7e-10 70.5 137 37.2
Sp7g30060 Schrenkiella parvula HOM05D002651 ORTHO05D002841 1.7e-10 70.5 149 35.6
TWI63G1496 Tripterygium wilfordii HOM05D002651 ORTHO05D002841 1.7e-10 70.5 186 32.8
HanXRQChr04g0096651 Helianthus annuus HOM05D002651 ORTHO05D002841 2.2e-10 70.1 179 33.0
GSVIVG01035861001 Vitis vinifera HOM05D002651 ORTHO05D002841 3.8e-10 69.3 170 31.8
AT4G32295 Arabidopsis thaliana HOM05D002651 ORTHO05D002841 4.9e-10 68.9 107 40.2
Cfa013143 Carpinus fangiana HOM05D002651 ORTHO05D002841 4.9e-10 68.9 141 32.6
C01p06690 Brassica napus HOM05D002651 ORTHO05D002841 6.4e-10 68.6 138 35.5
C07p59170 Brassica napus HOM05D002651 ORTHO05D002841 8.4e-10 68.2 110 38.2
Gohir.D06G100366 Gossypium hirsutum HOM05D002651 ORTHO05D002841 8.4e-10 68.2 125 36.0
Gorai.010G115300 Gossypium raimondii HOM05D002651 ORTHO05D002841 8.4e-10 68.2 125 36.0
MBI01_g20903_MAGBIO Magnolia biondii HOM05D002651 ORTHO05D002841 8.4e-10 68.2 75 46.7
BcaB03g12740 Brassica carinata HOM05D002651 ORTHO05D002841 1.1e-09 67.8 140 37.1
A03p61320 Brassica napus HOM05D002651 ORTHO05D002841 1.1e-09 67.8 135 36.3
Sed0015450 Sechium edule HOM05D002651 ORTHO05D002841 1.1e-09 67.8 121 34.7
BcaNung03582 Brassica carinata HOM05D002651 ORTHO05D002841 1.4e-09 67.4 110 38.2
BolC7t46365H Brassica oleracea HOM05D002651 ORTHO05D002841 1.4e-09 67.4 110 38.2
BraA03t15176Z Brassica rapa HOM05D002651 ORTHO05D002841 1.4e-09 67.4 135 36.3
AUR62013331 Chenopodium quinoa HOM05D002651 ORTHO05D002841 1.4e-09 67.4 152 32.9
Thecc.09G024600 Theobroma cacao HOM05D002651 ORTHO05D002841 1.4e-09 67.4 170 30.0
Gohir.A06G098300 Gossypium hirsutum HOM05D002651 ORTHO05D002841 1.9e-09 67.0 124 35.5
PSO170G1980 Papaver somniferum HOM05D002651 ORTHO05D002841 1.9e-09 67.0 41 73.2
AL7G19540 Arabidopsis lyrata HOM05D002651 ORTHO05D002841 3.2e-09 66.2 78 47.4
ClCG08G013390 Citrullus lanatus HOM05D002651 ORTHO05D002841 3.2e-09 66.2 179 33.5
Gorai.001G033800 Gossypium raimondii HOM05D002651 ORTHO05D002841 3.2e-09 66.2 116 39.7
Manes.16G122300 Manihot esculenta HOM05D002651 ORTHO05D002841 3.2e-09 66.2 177 32.8
PSO017G0463 Papaver somniferum HOM05D002651 ORTHO05D002841 4.1e-09 65.9 41 70.7
Aqoxy7G02269_Aqoxy7G02270 Aquilegia oxysepala HOM05D002651 ORTHO05D002841 5.4e-09 65.5 185 30.8
Gohir.A07G028300 Gossypium hirsutum HOM05D002651 ORTHO05D002841 5.4e-09 65.5 114 35.1
MD00G1144400 Malus domestica HOM05D002651 ORTHO05D002841 5.4e-09 65.5 81 45.7
TWI34G0613 Tripterygium wilfordii HOM05D002651 ORTHO05D002841 5.4e-09 65.5 137 35.0
SGA_v2.0_scaffold64G21935 Striga asiatica HOM05D002651 ORTHO05D002841 9.2e-09 64.7 165 35.2
Actinidia13233 Actinidia chinensis HOM05D002651 ORTHO05D002841 1.2e-08 64.3 124 35.5
Ah.14g079770 Amaranthus hybridus HOM05D002651 ORTHO05D002841 1.2e-08 64.3 152 32.9
Haze_21516 Corylus avellana HOM05D002651 ORTHO05D002841 1.2e-08 64.3 178 33.1
Duzib168G0368 Durio zibethinus HOM05D002651 ORTHO05D002841 1.2e-08 64.3 131 32.1
Gohir.A05G053700 Gossypium hirsutum HOM05D002651 ORTHO05D002841 1.6e-08 63.9 189 29.1
RcHm_v2.0_Chr6g0297891 Rosa chinensis HOM05D002651 ORTHO05D002841 1.6e-08 63.9 122 35.2
CARHR240200 Cardamine hirsuta HOM05D002651 ORTHO05D002841 2.7e-08 63.2 40 70.0
CsaV3_2G032130 Cucumis sativus L. HOM05D002651 ORTHO05D002841 2.7e-08 63.2 122 35.2
Thhalv10026043m.g Eutrema salsugineum HOM05D002651 ORTHO05D002841 2.7e-08 63.2 42 66.7
FAN20G1883 Fragaria x ananassa HOM05D002651 ORTHO05D002841 3.5e-08 62.8 126 31.0
Actinidia22343 Actinidia chinensis HOM05D002651 ORTHO05D002841 4.6e-08 62.4 125 34.4
EL10Ac8g18693 Beta vulgaris HOM05D002651 ORTHO05D002841 4.6e-08 62.4 153 30.7
Potri.018G027100 Populus trichocarpa HOM05D002651 ORTHO05D002841 4.6e-08 62.4 84 45.2
MELO3C011264.2 Cucumis melo HOM05D002651 ORTHO05D002841 6.0e-08 62.0 122 34.4
Nn8g39493 Nelumbo nucifera HOM05D002651 ORTHO05D002841 6.0e-08 62.0 161 29.8
THA.LOC104803655 Tarenaya hassleriana HOM05D002651 ORTHO05D002841 7.8e-08 61.6 44 63.6
A01p06080 Brassica napus HOM05D002651 ORTHO05D002841 1.0e-07 61.2 163 32.5
Cc06_g08230 Coffea canephora HOM05D002651 ORTHO05D002841 1.0e-07 61.2 154 31.8
FAN27G0660 Fragaria x ananassa HOM05D002651 ORTHO05D002841 1.0e-07 61.2 122 30.3
Hund09268 Selenicereus undatus HOM05D002651 ORTHO05D002841 1.3e-07 60.8 151 31.1
VMungo1309G0489 Vigna mungo HOM05D002651 ORTHO05D002841 1.3e-07 60.8 111 34.2
Atru.chr7.2430 Acer truncatum HOM05D002651 ORTHO05D002841 1.7e-07 60.5 64 46.9
Glyma.04G066500 Glycine max HOM05D002651 ORTHO05D002841 1.7e-07 60.5 120 32.5
PGR044G1682 Punica granatum HOM05D002651 ORTHO05D002841 1.7e-07 60.5 113 38.9
Carub.0007s0828 Capsella rubella HOM05D002651 ORTHO05D002841 2.3e-07 60.1 40 65.0
FvH4_2g29010 Fragaria vesca HOM05D002651 ORTHO05D002841 2.3e-07 60.1 120 30.8
FAN15G3098 Fragaria x ananassa HOM05D002651 ORTHO05D002841 2.3e-07 60.1 120 30.8
FAN24G0990 Fragaria x ananassa HOM05D002651 ORTHO05D002841 2.3e-07 60.1 120 30.8
Sabra06G0199000 Salix brachista HOM05D002651 ORTHO05D002841 2.3e-07 60.1 62 50.0
CiPaw.08G011100 Carya illinoinensis HOM05D002651 ORTHO05D002841 3.0e-07 59.7 62 46.8
Eucgr.C02771 Eucalyptus grandis HOM05D002651 ORTHO05D002841 3.0e-07 59.7 116 37.1
Gohir.D05G057300 Gossypium hirsutum HOM05D002651 ORTHO05D002841 3.0e-07 59.7 190 28.4
Potri.006G254700 Populus trichocarpa HOM05D002651 ORTHO05D002841 3.0e-07 59.7 73 42.5
Sc08g0006440 Simmondsia chinensis HOM05D002651 ORTHO05D002841 3.0e-07 59.7 148 34.5
Cc08_g00600 Coffea canephora HOM05D002651 ORTHO05D002841 3.9e-07 59.3 83 43.4
HanXRQChr10g0315701 Helianthus annuus HOM05D002651 ORTHO05D002841 3.9e-07 59.3 139 32.4
Lj3C846T11 Lonicera japonica HOM05D002651 ORTHO05D002841 3.9e-07 59.3 115 38.3
Prupe.1G481300 Prunus persica HOM05D002651 ORTHO05D002841 3.9e-07 59.3 36 69.4
QL02p089426 Quercus lobata HOM05D002651 ORTHO05D002841 3.9e-07 59.3 144 34.0
Lsat_1_v5_gn_8_62201 Lactuca sativa HOM05D002651 ORTHO05D002841 5.1e-07 58.9 127 31.5
Rhsim03G0249800 Rhododendron simsii HOM05D002651 ORTHO05D002841 5.1e-07 58.9 142 29.6
Oeu029171.1 Olea europaea HOM05D002651 ORTHO05D002841 6.6e-07 58.5 159 33.3
Duzib187G1449 Durio zibethinus HOM05D002651 ORTHO05D002841 8.7e-07 58.2 72 43.1
Nitab4.5_0011210g0010 Nicotiana tabacum HOM05D002651 ORTHO05D002841 8.7e-07 58.2 141 34.8
Phvul.009G092700 Phaseolus vulgaris HOM05D002651 ORTHO05D002841 8.7e-07 58.2 70 44.3
PGR102G3228 Punica granatum HOM05D002651 ORTHO05D002841 8.7e-07 58.2 122 34.4
SalBow4G0028 Salvia bowleyana HOM05D002651 ORTHO05D002841 8.7e-07 58.2 80 45.0
TAR383G0556 Trochodendron aralioides HOM05D002651 ORTHO05D002841 8.7e-07 58.2 58 51.7
Glyma.13G158300 Glycine max HOM05D002651 ORTHO05D002841 1.5e-06 57.4 136 31.6
Actinidia26382 Actinidia chinensis HOM05D002651 ORTHO05D002841 1.9e-06 57.0 131 32.1
MSTRG.11614 Avicennia marina HOM05D002651 ORTHO05D002841 2.5e-06 56.6 95 42.1
Lalb_Chr13g0301711 Lupinus albus HOM05D002651 ORTHO05D002841 2.5e-06 56.6 139 30.9
MD15G1169900 Malus domestica HOM05D002651 ORTHO05D002841 2.5e-06 56.6 147 31.3
PGSC0003DMG400030900 Solanum tuberosum HOM05D002651 ORTHO05D002841 2.5e-06 56.6 143 32.2
vmacro06143 Vaccinium macrocarpon HOM05D002651 ORTHO05D002841 3.3e-06 56.2 143 30.1
Lj4g0026849 Lotus japonicus HOM05D002651 ORTHO05D002841 4.3e-06 55.8 130 27.7
Peaxi162Scf00870g00021 Petunia axillaris HOM05D002651 ORTHO05D002841 4.3e-06 55.8 154 31.8
Phvul.003G166900 Phaseolus vulgaris HOM05D002651 ORTHO05D002841 4.3e-06 55.8 136 31.6
PGR142G3561 Punica granatum HOM05D002651 ORTHO05D002841 4.3e-06 55.8 37 64.9
Sed0025027 Sechium edule HOM05D002651 ORTHO05D002841 4.3e-06 55.8 90 37.8
vmacro05177 Vaccinium macrocarpon HOM05D002651 ORTHO05D002841 4.3e-06 55.8 131 30.5
Hma1.2p1_0018F.1_g012200 Hydrangea macrophylla HOM05D002651 ORTHO05D002841 5.6e-06 55.5 37 64.9
GSVIVG01015558001 Vitis vinifera HOM05D002651 ORTHO05D002841 5.6e-06 55.5 41 61.0
Gorai.009G058400 Gossypium raimondii HOM05D002651 ORTHO05D002841 7.3e-06 55.1 190 27.9
Nitab4.5_0000209g0240 Nicotiana tabacum HOM05D002651 ORTHO05D002841 7.3e-06 55.1 162 32.7
Peaxi162Scf00891g00127 Petunia axillaris HOM05D002651 ORTHO05D002841 7.3e-06 55.1 90 35.6
Migut.A00041 Erythranthe guttata HOM05D002651 ORTHO05D002841 9.6e-06 54.7 36 66.7
Nitab4.5_0000028g0130 Nicotiana tabacum HOM05D002651 ORTHO05D002841 9.6e-06 54.7 132 32.6
Psat4g037120 Pisum sativum HOM05D002651 ORTHO05D002841 9.6e-06 54.7 145 30.3


User provided reference genes

Program Settings