Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g035360 Amaranthus hybridus HOM05D006716 ORTHO05D008396 1.9e-124 449.1 217 100.0
Ah.10g035300 Amaranthus hybridus HOM05D006716 ORTHO05D008396 1.1e-95 353.6 198 85.4
TPR.G36640 Trifolium pratense HOM05D006716 ORTHO05D008396 1.3e-40 170.6 182 49.5
TPR.G40231 Trifolium pratense HOM05D006716 ORTHO05D008396 2.4e-39 166.4 179 50.3
TWI31G0239 Tripterygium wilfordii HOM05D006716 ORTHO05D008396 2.3e-37 159.8 214 43.5
Ah.10g035270 Amaranthus hybridus HOM05D006716 ORTHO05D008396 1.1e-36 157.5 179 46.9
Ah.10g035350 Amaranthus hybridus HOM05D006716 ORTHO05D008396 1.1e-36 157.5 179 46.9
Medtr5g464730 Medicago truncatula HOM05D006716 ORTHO05D008396 7.4e-36 154.8 178 47.8
SGA_v2.0_scaffold50G18515 Striga asiatica HOM05D006716 ORTHO05D008396 7.4e-36 154.8 226 41.2
TPR.G15037 Trifolium pratense HOM05D006716 ORTHO05D008396 7.4e-36 154.8 178 46.6
Ca_24998_v3 Cicer arietinum L. HOM05D006716 ORTHO05D008396 6.2e-35 151.8 215 41.4
Medtr5g064160 Medicago truncatula HOM05D006716 ORTHO05D008396 8.1e-35 151.4 229 40.6
Nitab4.5_0007530g0040 Nicotiana tabacum HOM05D006716 ORTHO05D008396 8.1e-35 151.4 211 41.2
DCAR_002644 Daucus carota HOM05D006716 ORTHO05D008396 2.4e-34 149.8 201 43.3
Sopen02g027470 Solanum pennellii HOM05D006716 ORTHO05D008396 3.1e-34 149.4 214 42.1
Nitab4.5_0001339g0090 Nicotiana tabacum HOM05D006716 ORTHO05D008396 6.9e-34 148.3 214 41.6
Solyc02g082720.4 Solanum lycopersicum HOM05D006716 ORTHO05D008396 9.0e-34 147.9 214 41.6
Peaxi162Scf00475g00124 Petunia axillaris HOM05D006716 ORTHO05D008396 8.4e-32 141.4 212 40.1
Peaxi162Scf00475g00024 Petunia axillaris HOM05D006716 ORTHO05D008396 1.9e-31 140.2 212 39.2
Solyc02g082590.3 Solanum lycopersicum HOM05D006716 ORTHO05D008396 1.9e-31 140.2 213 40.8
Peaxi162Scf00168g01523 Petunia axillaris HOM05D006716 ORTHO05D008396 5.5e-31 138.7 186 40.3
Sopen02g027280 Solanum pennellii HOM05D006716 ORTHO05D008396 1.6e-30 137.1 213 39.9
Manes.S095408 Manihot esculenta HOM05D006716 ORTHO05D008396 1.0e-29 134.4 213 39.4
Rhsim02G0098700 Rhododendron simsii HOM05D006716 ORTHO05D008396 6.7e-29 131.7 212 39.6
Peaxi162Scf00663g00009 Petunia axillaris HOM05D006716 ORTHO05D008396 1.1e-28 131.0 179 42.5
Duzib114G0505 Durio zibethinus HOM05D006716 ORTHO05D008396 4.3e-28 129.0 193 39.4
Duzib114G0950 Durio zibethinus HOM05D006716 ORTHO05D008396 5.7e-28 128.6 193 39.4
Rhsim02G0098800 Rhododendron simsii HOM05D006716 ORTHO05D008396 1.1e-26 124.4 181 40.3
Lj9A35T20 Lonicera japonica HOM05D006716 ORTHO05D008396 2.4e-26 123.2 174 39.1
CSS0009954 Camellia sinensis var. sinensis HOM05D006716 ORTHO05D008396 4.1e-26 122.5 224 36.6
CSS0050127 Camellia sinensis var. sinensis HOM05D006716 ORTHO05D008396 5.3e-26 122.1 224 36.2
CAN.G497.70 Capsicum annuum HOM05D006716 ORTHO05D008396 6.9e-26 121.7 177 41.2
DCAR_001924 Daucus carota HOM05D006716 ORTHO05D008396 1.2e-25 120.9 180 39.4
SGA_v2.0_scaffold57G20303 Striga asiatica HOM05D006716 ORTHO05D008396 1.5e-25 120.6 186 40.3
Aqoxy4G01948 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 2.6e-25 119.8 220 34.5
Aqoxy4G01949 Aquilegia oxysepala HOM05D006716 ORTHO05D008396 4.5e-25 119.0 216 34.3
Hma1.2p1_0003F.1_g003620 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 7.6e-25 118.2 211 35.5
Peaxi162Scf00226g00716 Petunia axillaris HOM05D006716 ORTHO05D008396 2.9e-24 116.3 173 41.0
Peaxi162Scf00663g00027 Petunia axillaris HOM05D006716 ORTHO05D008396 6.5e-24 115.2 213 35.7
DCAR_001902 Daucus carota HOM05D006716 ORTHO05D008396 1.1e-23 114.4 185 38.9
Hma1.2p1_0154F.1_g068000 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 1.4e-23 114.0 181 38.1
Peaxi162Scf00226g00715 Petunia axillaris HOM05D006716 ORTHO05D008396 4.2e-23 112.5 170 39.4
Rhsim01G0093700 Rhododendron simsii HOM05D000991 ORTHO05D008396 9.3e-23 111.3 162 40.1
Rhsim01G0092600 Rhododendron simsii HOM05D006716 ORTHO05D008396 2.7e-22 109.8 162 38.9
vmacro12393 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 2.7e-22 109.8 172 37.8
CAN.G497.65 Capsicum annuum HOM05D006716 ORTHO05D008396 3.6e-22 109.4 180 37.2
Duzib114G0774 Durio zibethinus HOM05D006716 ORTHO05D008396 3.6e-22 109.4 167 40.1
Peaxi162Scf00168g01520 Petunia axillaris HOM05D006716 ORTHO05D008396 4.6e-22 109.0 178 38.8
vmacro15749 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 7.9e-22 108.2 180 38.3
Hma1.2p1_0310F.1_g120920 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 3.0e-21 106.3 213 36.6
SGA_v2.0_scaffold237G43860 Striga asiatica HOM05D006716 ORTHO05D008396 3.0e-21 106.3 180 36.7
Hma1.2p1_0003F.1_g003570 Hydrangea macrophylla HOM05D006716 ORTHO05D008396 3.9e-21 105.9 183 35.5
Peaxi162Scf00038g00840 Petunia axillaris HOM05D006716 ORTHO05D008396 6.7e-21 105.1 188 35.6
TPR.G29566 Trifolium pratense HOM05D006716 ORTHO05D008396 6.7e-21 105.1 190 35.8
vmacro12389 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 5.7e-20 102.1 179 34.6
EL10Ac9g20945 Beta vulgaris HOM05D006716 ORTHO05D008396 9.7e-20 101.3 173 39.3
Potri.018G001500 Populus trichocarpa HOM05D006716 ORTHO05D008396 2.2e-19 100.1 232 34.5
CAN.G497.60 Capsicum annuum HOM05D006716 ORTHO05D008396 2.8e-19 99.8 195 33.8
TPR.G12759 Trifolium pratense HOM05D006716 ORTHO05D008396 3.7e-19 99.4 161 41.0
Lj9A35T22 Lonicera japonica HOM05D006716 ORTHO05D008396 4.1e-18 95.9 192 34.4
SGA_v2.0_scaffold57G20300 Striga asiatica HOM05D006716 ORTHO05D008396 4.1e-18 95.9 177 35.0
Duzib114G0358 Durio zibethinus HOM05D006716 ORTHO05D008396 4.5e-17 92.4 184 33.7
Ah.10g035280 Amaranthus hybridus HOM05D006716 ORTHO05D008396 7.7e-17 91.7 84 59.5
Potri.018G001301 Populus trichocarpa HOM05D006716 ORTHO05D008396 1.3e-16 90.9 172 34.9
Rhsim09G0048400 Rhododendron simsii HOM05D006716 ORTHO05D008396 1.7e-16 90.5 170 35.3
Ah.10g035200 Amaranthus hybridus HOM05D006716 ORTHO05D008396 5.0e-16 89.0 84 58.3
Potri.018G001550 Populus trichocarpa HOM05D006716 ORTHO05D008396 1.4e-15 87.4 203 34.5
vmacro15747 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 1.4e-15 87.4 170 32.9
vmacro15746 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 3.2e-15 86.3 146 34.9
vmacro12392 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 5.5e-15 85.5 144 34.7
CAN.G1238.8 Capsicum annuum HOM05D006716 ORTHO05D008396 7.2e-15 85.1 192 32.8
Rhsim07G0026700 Rhododendron simsii HOM05D006716 ORTHO05D008396 2.1e-14 83.6 188 30.9
Rhsim01G0092700 Rhododendron simsii HOM05D006716 ORTHO05D008396 3.9e-13 79.3 176 30.1
Rhsim01G0093800 Rhododendron simsii HOM05D006716 ORTHO05D008396 3.9e-13 79.3 176 30.1
Rhsim01G0093600 Rhododendron simsii HOM05D006716 ORTHO05D008396 6.7e-13 78.6 186 31.2
Ah.08g210040 Amaranthus hybridus HOM05D006716 ORTHO05D008396 3.3e-12 76.3 148 37.2
Peaxi162Scf00226g00717 Petunia axillaris HOM05D006716 ORTHO05D008396 3.3e-12 76.3 140 32.1
Manes.11G055432 Manihot esculenta HOM05D006716 ORTHO05D008396 5.7e-12 75.5 111 36.0
PSO478G4756 Papaver somniferum HOM05D006716 ORTHO05D008396 5.7e-12 75.5 203 28.6
Os07g0665700 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 1.7e-11 73.9 151 34.4
Ah.10g035290 Amaranthus hybridus HOM05D006716 ORTHO05D008396 3.7e-11 72.8 97 35.1
PSO478G1238 Papaver somniferum HOM05D006716 ORTHO05D008396 3.7e-11 72.8 171 32.2
Os03g0109900 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D030339 1.1e-10 71.2 148 31.1
Os09g0436400 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 1.1e-10 71.2 149 36.2
Psat1g146440 Pisum sativum HOM05D006716 ORTHO05D008396 1.1e-10 71.2 83 50.6
Lj6A58T50 Lonicera japonica HOM05D006716 ORTHO05D008396 1.4e-10 70.9 140 31.4
Os01g0776500 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 1.4e-10 70.9 159 32.1
Manes.04G051500 Manihot esculenta HOM05D006716 ORTHO05D008396 2.4e-10 70.1 111 34.2
Os07g0665300 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 2.4e-10 70.1 152 34.9
DCAR_010103 Daucus carota HOM05D006716 ORTHO05D008396 3.1e-10 69.7 110 47.3
Os12g0141600 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 4.1e-10 69.3 146 33.6
Os09g0436300 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 1.2e-09 67.8 151 31.8
DCAR_001904 Daucus carota HOM05D006716 ORTHO05D008396 7.7e-09 65.1 100 36.0
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 1.3e-08 64.3 176 34.7
Os03g0608800 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 1.3e-08 64.3 173 29.5
Ca_25012_v3 Cicer arietinum L. HOM05D006716 ORTHO05D008396 1.7e-08 63.9 94 37.2
CAN.G497.57 Capsicum annuum HOM05D006716 ORTHO05D008396 8.5e-08 61.6 90 33.3
Os09g0436700 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 1.9e-07 60.5 148 31.8
Ca_25001_v3 Cicer arietinum L. HOM05D006716 ORTHO05D008396 2.5e-07 60.1 67 43.3
Os01g0278600 Oryza sativa ssp. japonica HOM05D006716 ORTHO05D008396 2.5e-07 60.1 184 29.3
CAN.G679.10 Capsicum annuum HOM05D001437 ORTHO05D001297 9.4e-07 58.2 177 27.7
Aqoxy2G03015 Aquilegia oxysepala HOM05D005214 ORTHO05D005861 1.2e-06 57.8 134 35.1
Ca_25017_v3 Cicer arietinum L. HOM05D006716 ORTHO05D008396 1.2e-06 57.8 114 39.5
Os03g0846400 Oryza sativa ssp. japonica HOM05D013536 ORTHO05D018072 1.6e-06 57.4 91 35.2
DCAR_024034 Daucus carota HOM05D006716 ORTHO05D008396 2.7e-06 56.6 144 29.9
Gohir.A08G209100 Gossypium hirsutum HOM05D005214 ORTHO05D005861 2.7e-06 56.6 138 33.3
EL10Ac4g09934 Beta vulgaris HOM05D005214 ORTHO05D005861 3.6e-06 56.2 135 35.6
CDE09G0722 Ceratophyllum demersum HOM05D005214 ORTHO05D005861 3.6e-06 56.2 135 34.1
TAR362G1097 Trochodendron aralioides HOM05D005214 ORTHO05D005861 3.6e-06 56.2 135 35.6
Gorai.004G240000 Gossypium raimondii HOM05D005214 ORTHO05D005861 4.7e-06 55.8 138 32.6
PSO017G6103 Papaver somniferum HOM05D006716 ORTHO05D008396 4.7e-06 55.8 83 28.9
Sabra13G0021100 Salix brachista HOM05D005214 ORTHO05D005861 7.9e-06 55.1 138 34.8


User provided reference genes

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