Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 1.7e-90 336.3 201 100.0
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 3.2e-78 295.4 201 83.1
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 2.3e-76 289.3 201 78.6
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 2.0e-75 286.2 201 73.1
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 2.6e-75 285.8 201 74.1
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 3.3e-75 285.4 201 73.1
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 3.3e-75 285.4 201 73.1
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 2.2e-74 282.7 222 74.8
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 8.2e-74 280.8 217 70.0
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 1.4e-73 280.0 201 71.6
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 5.3e-73 278.1 217 70.5
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.3e-73 278.1 217 69.1
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 5.3e-73 278.1 217 69.1
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 5.3e-73 278.1 217 69.1
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 5.3e-73 278.1 217 69.1
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 9.1e-73 277.3 217 69.1
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 1.6e-72 276.6 217 71.4
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 2.0e-72 276.2 217 71.9
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 2.7e-72 275.8 217 69.1
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 3.5e-72 275.4 217 68.2
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 3.5e-72 275.4 217 68.7
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 3.5e-72 275.4 217 69.6
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.5e-72 275.4 217 68.7
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.5e-72 275.4 217 71.4
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 3.5e-72 275.4 217 67.7
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 4.5e-72 275.0 217 70.5
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 4.5e-72 275.0 217 67.7
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 5.9e-72 274.6 217 68.7
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 7.7e-72 274.2 217 68.7
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 7.7e-72 274.2 217 66.4
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 7.7e-72 274.2 217 68.7
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 1.0e-71 273.9 217 68.7
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 1.0e-71 273.9 217 68.2
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 1.0e-71 273.9 217 68.2
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 1.0e-71 273.9 201 78.6
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 1.3e-71 273.5 217 65.9
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 1.3e-71 273.5 217 65.9
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 1.3e-71 273.5 217 65.9
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 1.3e-71 273.5 217 68.2
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 1.3e-71 273.5 217 67.7
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.3e-71 273.5 217 67.7
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.3e-71 273.5 217 71.0
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 1.3e-71 273.5 217 68.2
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.3e-71 273.5 217 68.2
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 1.7e-71 273.1 217 68.7
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 1.7e-71 273.1 217 65.9
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.7e-71 273.1 217 71.0
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 1.7e-71 273.1 217 68.2
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 2.2e-71 272.7 217 68.2
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 2.9e-71 272.3 217 65.9
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 2.9e-71 272.3 217 67.7
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 2.9e-71 272.3 217 65.9
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 2.9e-71 272.3 217 67.7
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 2.9e-71 272.3 217 65.9
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 3.8e-71 271.9 217 65.4
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 5.0e-71 271.6 217 67.3
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 5.0e-71 271.6 217 67.3
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 5.0e-71 271.6 217 66.8
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 5.0e-71 271.6 201 79.6
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 6.5e-71 271.2 217 65.4
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 6.5e-71 271.2 217 65.4
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 6.5e-71 271.2 217 65.0
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 6.5e-71 271.2 217 65.4
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 6.5e-71 271.2 217 65.0
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 6.5e-71 271.2 217 68.2
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 6.5e-71 271.2 217 68.2
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 6.5e-71 271.2 217 68.2
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 8.5e-71 270.8 217 65.0
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 8.5e-71 270.8 217 65.0
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 8.5e-71 270.8 217 67.3
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 1.1e-70 270.4 217 65.0
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 1.1e-70 270.4 217 65.0
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 1.1e-70 270.4 217 66.4
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 1.1e-70 270.4 217 66.8
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 1.5e-70 270.0 217 65.4
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 1.5e-70 270.0 217 66.8
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 1.9e-70 269.6 217 66.8
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.9e-70 269.6 201 79.1
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 1.9e-70 269.6 217 66.8
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.9e-70 269.6 217 67.3
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 3.2e-70 268.9 217 66.4
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 3.2e-70 268.9 217 70.0
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 3.2e-70 268.9 216 66.7
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 4.2e-70 268.5 222 65.8
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 5.5e-70 268.1 216 67.1
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.5e-70 268.1 217 68.2
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.5e-70 268.1 217 68.2
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 5.5e-70 268.1 217 66.4
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 5.5e-70 268.1 217 67.3
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 7.2e-70 267.7 217 65.9
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 7.2e-70 267.7 217 65.9
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 1.6e-69 266.5 217 65.9
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 1.6e-69 266.5 217 65.9
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 2.1e-69 266.2 217 65.0
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 2.7e-69 265.8 215 66.0
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 2.7e-69 265.8 201 75.6
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 2.7e-69 265.8 217 65.4
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 3.6e-69 265.4 217 66.4
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 4.7e-69 265.0 217 65.4
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 4.7e-69 265.0 217 65.9
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 6.1e-69 264.6 217 65.9
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 6.1e-69 264.6 217 65.4
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 6.1e-69 264.6 217 65.4
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 8.0e-69 264.2 221 65.6
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 1.0e-68 263.8 217 65.4
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 1.8e-68 263.1 221 63.8
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 1.8e-68 263.1 217 66.4
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 1.8e-68 263.1 217 63.6
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 2.3e-68 262.7 217 68.7
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.0e-68 262.3 216 66.2
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 3.0e-68 262.3 217 65.9
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 4.0e-68 261.9 217 65.0
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 5.2e-68 261.5 217 65.4
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 5.2e-68 261.5 217 65.4
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 6.8e-68 261.2 217 73.7
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 6.8e-68 261.2 217 73.7
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 8.8e-68 260.8 217 64.5
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.2e-67 260.4 216 63.9
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 2.0e-67 259.6 217 65.0
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 5.7e-67 258.1 227 62.1
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 7.5e-67 257.7 200 68.5
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 3.7e-66 255.4 217 60.8
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 3.1e-65 252.3 218 63.8
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 4.5e-64 248.4 217 60.4
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 1.0e-63 247.3 277 59.9
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 2.3e-63 246.1 217 61.3
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 8.6e-63 244.2 217 60.8
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.1e-62 243.8 217 60.4
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 1.9e-62 243.0 139 87.1
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 2.8e-61 239.2 200 66.0
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 4.7e-61 238.4 217 59.4
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 8.0e-61 237.7 219 59.4
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 6.8e-60 234.6 155 78.1
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 1.2e-59 233.8 155 76.8
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 9.8e-59 230.7 218 66.5
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.2e-58 229.6 217 57.1
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 2.8e-58 229.2 155 76.1
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.4e-57 226.9 210 66.2
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 2.4e-57 226.1 139 82.7
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 3.1e-57 225.7 155 74.2
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 7.3e-54 214.5 137 73.0
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 8.0e-53 211.1 217 56.7
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 3.4e-51 205.7 201 59.7
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 4.4e-51 205.3 165 67.3
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 8.3e-50 201.1 204 58.8
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 2.8e-45 186.0 220 48.6
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 1.9e-38 163.3 108 73.1
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 1.9e-38 163.3 108 73.1
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 5.6e-38 161.8 234 45.7
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 2.9e-34 149.4 220 40.9
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 6.4e-34 148.3 137 62.0
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 1.6e-32 143.7 151 49.0
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 5.1e-31 138.7 138 58.7
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 7.3e-30 134.8 65 93.8
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 5.2e-28 128.6 65 89.2
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 2.0e-27 126.7 65 83.1
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.4e-25 119.8 97 63.9
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 1.2e-24 117.5 62 80.6
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.3e-23 113.2 265 36.2
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 5.1e-23 112.1 81 70.4
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 8.7e-23 111.3 115 57.4
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 5.6e-14 82.0 102 51.0
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 5.6e-14 82.0 102 51.0
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 5.6e-14 82.0 102 51.0
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 5.6e-14 82.0 102 51.0
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 5.6e-14 82.0 102 51.0
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 4.5e-11 72.4 39 82.1
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 1.7e-10 70.5 39 79.5
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 4.9e-10 68.9 48 70.8
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 4.9e-10 68.9 48 70.8
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 4.9e-10 68.9 48 70.8
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 1.9e-09 67.0 48 68.8
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.5e-08 62.8 53 67.9
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.5e-06 57.4 73 47.9
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 7.4e-06 55.1 34 79.4


User provided reference genes

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