Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g035130 Amaranthus hybridus HOM05D005681 ORTHO05D007274 3.0e-165 585.1 295 100.0
EL10Ac2g04057 Beta vulgaris HOM05D005681 ORTHO05D007274 3.9e-141 505.0 296 85.1
AUR62009315 Chenopodium quinoa HOM05D005681 ORTHO05D007274 3.9e-141 505.0 294 85.7
Hund03415 Selenicereus undatus HOM05D005681 ORTHO05D007274 1.3e-123 446.8 296 76.7
Sc23g0005990 Simmondsia chinensis HOM05D005681 ORTHO05D007274 8.9e-117 424.1 282 74.8
Dinv30262 Davidia involucrata HOM05D005681 ORTHO05D007274 7.5e-116 421.0 296 70.6
Atru.chr7.2148 Acer truncatum HOM05D005681 ORTHO05D007274 2.8e-115 419.1 295 70.8
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 2.4e-114 416.0 275 73.1
Gorai.010G110300 Gossypium raimondii HOM05D005681 ORTHO05D007274 1.2e-113 413.7 296 70.3
Gohir.A06G095700 Gossypium hirsutum HOM05D005681 ORTHO05D007274 2.7e-113 412.5 296 69.9
Duzib150G0332 Durio zibethinus HOM05D005681 ORTHO05D007274 3.5e-113 412.1 296 70.9
TWI32G1178 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 1.3e-112 410.2 295 69.2
Ciclev10009066m.g Citrus clementina HOM05D005681 ORTHO05D007274 6.6e-112 407.9 297 67.3
Gorai.009G051200 Gossypium raimondii HOM05D005681 ORTHO05D007274 6.6e-112 407.9 296 67.6
Nitab4.5_0000052g0240 Nicotiana tabacum HOM05D005681 ORTHO05D007274 8.6e-112 407.5 304 67.1
CiPaw.08G024200 Carya illinoinensis HOM05D005681 ORTHO05D007274 1.1e-111 407.1 298 69.8
Lj1g0012145 Lotus japonicus HOM05D005681 ORTHO05D007274 1.1e-111 407.1 296 70.3
Manes.03G061300 Manihot esculenta HOM05D005681 ORTHO05D007274 1.1e-111 407.1 281 70.1
Cc08_g09110 Coffea canephora HOM05D005681 ORTHO05D007274 2.5e-111 406.0 303 67.7
Gohir.A05G047800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 2.5e-111 406.0 296 67.2
GSVIVG01035659001 Vitis vinifera HOM05D005681 ORTHO05D007274 4.3e-111 405.2 282 70.9
Gohir.D05G049900 Gossypium hirsutum HOM05D005681 ORTHO05D007274 7.3e-111 404.4 296 67.2
Thecc.09G041100 Theobroma cacao HOM05D005681 ORTHO05D007274 7.3e-111 404.4 296 69.9
TWI34G0866 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 7.3e-111 404.4 282 70.2
Hma1.2p1_0140F.1_g063453 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 9.5e-111 404.1 297 69.0
Hma1.2p1_0140F.1_g063456 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 9.5e-111 404.1 297 69.0
THA.LOC104803765 Tarenaya hassleriana HOM05D005681 ORTHO05D007274 9.5e-111 404.1 276 72.8
Actinidia31229 Actinidia chinensis HOM05D005681 ORTHO05D007274 1.2e-110 403.7 297 69.0
Potri.006G241200 Populus trichocarpa HOM05D005681 ORTHO05D007274 1.2e-110 403.7 296 69.6
Nitab4.5_0011506g0010 Nicotiana tabacum HOM05D005681 ORTHO05D007274 2.1e-110 402.9 304 67.1
Solyc08g068350.3 Solanum lycopersicum HOM05D005681 ORTHO05D007274 2.8e-110 402.5 293 67.9
TAR626G1886 Trochodendron aralioides HOM05D005681 ORTHO05D007274 3.6e-110 402.1 294 67.7
Peaxi162Scf00523g00017 Petunia axillaris HOM05D005681 ORTHO05D007274 4.7e-110 401.7 300 68.0
Actinidia13315 Actinidia chinensis HOM05D005681 ORTHO05D007274 8.0e-110 401.0 294 70.1
ClCG08G012350 Citrullus lanatus HOM05D005681 ORTHO05D007274 1.0e-109 400.6 296 67.2
CAN.G21.34 Capsicum annuum HOM05D005681 ORTHO05D007274 2.3e-109 399.4 308 64.9
MELO3C011155.2 Cucumis melo HOM05D005681 ORTHO05D007274 3.1e-109 399.1 283 69.3
AT4G32750 Arabidopsis thaliana HOM05D005681 ORTHO05D007274 4.0e-109 398.7 276 73.2
Ca_15613_v3 Cicer arietinum L. HOM05D005681 ORTHO05D007274 4.0e-109 398.7 298 69.1
Sopen08g022200 Solanum pennellii HOM05D005681 ORTHO05D007274 6.8e-109 397.9 296 67.6
PGR044G0773 Punica granatum HOM05D005681 ORTHO05D007274 1.2e-108 397.1 296 68.6
Dinv14236 Davidia involucrata HOM05D005681 ORTHO05D007274 1.5e-108 396.7 297 67.3
Lsat_1_v5_gn_5_33341 Lactuca sativa HOM05D005681 ORTHO05D007274 2.6e-108 396.0 302 66.2
QL12p029589 Quercus lobata HOM05D005681 ORTHO05D007274 4.4e-108 395.2 294 67.0
Carub.0007s0774 Capsella rubella HOM05D005681 ORTHO05D007274 5.8e-108 394.8 283 70.3
PGSC0003DMG400010842 Solanum tuberosum HOM05D005681 ORTHO05D007274 9.8e-108 394.0 296 66.6
Glyma.04G080900 Glycine max HOM05D005681 ORTHO05D007274 1.3e-107 393.7 296 67.6
Psat0s2259g0040 Pisum sativum HOM05D005681 ORTHO05D007274 1.3e-107 393.7 296 66.9
Eucgr.C02898 Eucalyptus grandis HOM05D005681 ORTHO05D007274 2.2e-107 392.9 279 71.7
Glyma.06G082600 Glycine max HOM05D005681 ORTHO05D007274 3.7e-107 392.1 296 67.6
CSS0039623 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 4.9e-107 391.7 284 68.7
AL7G19000 Arabidopsis lyrata HOM05D005681 ORTHO05D007274 1.1e-106 390.6 283 70.7
arahy.Tifrunner.gnm1.ann1.Z4VD8H Arachis hypogaea HOM05D005681 ORTHO05D007274 1.1e-106 390.6 295 66.1
RcHm_v2.0_Chr6g0305881 Rosa chinensis HOM05D005681 ORTHO05D007274 1.9e-106 389.8 280 70.0
COL.COLO4_18685 Corchorus olitorius HOM05D005681 ORTHO05D007274 2.4e-106 389.4 317 64.0
Prupe.1G451500 Prunus persica HOM05D005681 ORTHO05D007274 3.2e-106 389.0 275 70.5
arahy.Tifrunner.gnm1.ann1.M4G12U Arachis hypogaea HOM05D005681 ORTHO05D007274 5.4e-106 388.3 295 66.1
CARHR240740 Cardamine hirsuta HOM05D005681 ORTHO05D007274 5.4e-106 388.3 295 68.5
Thhalv10025880m.g Eutrema salsugineum HOM05D005681 ORTHO05D007274 5.4e-106 388.3 282 69.9
Aa31LG2G17210 Aethionema arabicum HOM05D005681 ORTHO05D007274 7.0e-106 387.9 293 68.3
VMungo1309G2636 Vigna mungo HOM05D005681 ORTHO05D007274 9.2e-106 387.5 300 66.7
Rhsim07G0152800 Rhododendron simsii HOM05D005681 ORTHO05D007274 1.2e-105 387.1 295 67.5
Lalb_Chr08g0243221 Lupinus albus HOM05D005681 ORTHO05D007274 2.0e-105 386.3 297 66.3
BcaB03g12761 Brassica carinata HOM05D005681 ORTHO05D007274 2.7e-105 386.0 283 67.8
PSO782G3698 Papaver somniferum HOM05D005681 ORTHO05D007274 2.7e-105 386.0 282 68.1
Haze_21866 Corylus avellana HOM05D005681 ORTHO05D007274 7.8e-105 384.4 372 54.8
Nn3g18081 Nelumbo nucifera HOM05D005681 ORTHO05D007274 1.0e-104 384.0 286 66.8
PSO566G0344 Papaver somniferum HOM05D005681 ORTHO05D007274 1.7e-104 383.3 283 67.8
Medtr3g110075 Medicago truncatula HOM05D005681 ORTHO05D007274 3.0e-104 382.5 293 67.2
Sed0026422 Sechium edule HOM05D005681 ORTHO05D007274 3.0e-104 382.5 282 67.7
A08p17930 Brassica napus HOM05D005681 ORTHO05D007274 3.9e-104 382.1 279 69.5
BraA08t33745Z Brassica rapa HOM05D005681 ORTHO05D007274 3.9e-104 382.1 279 69.5
Sp7g30510 Schrenkiella parvula HOM05D005681 ORTHO05D007274 5.0e-104 381.7 283 68.9
BolC3t21001H Brassica oleracea HOM05D005681 ORTHO05D007274 6.6e-104 381.3 279 68.8
SalBow4G0279 Salvia bowleyana HOM05D005681 ORTHO05D007274 8.6e-104 380.9 287 65.5
Migut.A00229 Erythranthe guttata HOM05D005681 ORTHO05D007274 1.1e-103 380.6 302 63.2
C03p87050 Brassica napus HOM05D005681 ORTHO05D007274 1.5e-103 380.2 279 68.8
MD15G1096600 Malus domestica HOM05D005681 ORTHO05D007274 2.5e-103 379.4 279 67.4
AUR62043614 Chenopodium quinoa HOM05D005681 ORTHO05D007274 5.6e-103 378.3 295 69.2
Potri.018G038600 Populus trichocarpa HOM05D005681 ORTHO05D007274 5.6e-103 378.3 296 66.6
TPR.G1346 Trifolium pratense HOM05D005681 ORTHO05D007274 7.3e-103 377.9 300 66.0
SGA_v2.0_scaffold243G44291 Striga asiatica HOM05D005681 ORTHO05D007274 1.2e-102 377.1 312 61.2
vmacro05364 Vaccinium macrocarpon HOM05D005681 ORTHO05D007274 1.2e-102 377.1 276 67.0
Aqoxy7G01593 Aquilegia oxysepala HOM05D005681 ORTHO05D007274 2.1e-102 376.3 294 63.9
Sabra06G0188600 Salix brachista HOM05D005681 ORTHO05D007274 3.6e-102 375.6 296 65.2
MSTRG.25900 Avicennia marina HOM05D005681 ORTHO05D007274 4.7e-102 375.2 301 64.1
MBI01_g15703_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 6.2e-102 374.8 298 65.1
AUR62029668 Chenopodium quinoa HOM05D005681 ORTHO05D007274 1.8e-101 373.2 295 68.8
Sed0017759 Sechium edule HOM05D005681 ORTHO05D007274 3.1e-101 372.5 293 63.8
Phvul.009G107000 Phaseolus vulgaris HOM05D005681 ORTHO05D007274 4.0e-101 372.1 283 67.1
Sabra18G0039000 Salix brachista HOM05D005681 ORTHO05D007274 1.5e-100 370.2 296 65.5
FvH4_2g35990 Fragaria vesca HOM05D005681 ORTHO05D007274 5.8e-100 368.2 281 68.3
CSS0012406 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 8.3e-99 364.4 286 66.1
Lj7A706G35 Lonicera japonica HOM05D005681 ORTHO05D007274 8.3e-99 364.4 279 64.9
FAN20G2636 Fragaria x ananassa HOM05D005681 ORTHO05D007274 1.9e-98 363.2 281 68.7
ATR0315G043 Amborella trichopoda HOM05D005681 ORTHO05D007274 2.5e-95 352.8 276 64.5
CANSAT80G1365 Cannabis sativa HOM05D005681 ORTHO05D007274 3.3e-95 352.4 295 61.0
HanXRQChr08g0236281 Helianthus annuus HOM05D005681 ORTHO05D007274 5.2e-93 345.1 295 62.4
MD08G1117000 Malus domestica HOM05D005681 ORTHO05D007274 2.6e-92 342.8 276 64.9
Cpa.g.sc78.73 Carica papaya HOM05D005681 ORTHO05D007274 7.5e-92 341.3 448 45.1
Nn2g11688 Nelumbo nucifera HOM05D005681 ORTHO05D007274 1.9e-90 336.7 236 69.5
HPP92_006301 Vanilla planifolia HOM05D005681 ORTHO05D007274 1.9e-90 336.7 291 58.8
HPP92_006306 Vanilla planifolia HOM05D005681 ORTHO05D007274 2.1e-89 333.2 291 58.4
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 7.8e-89 331.3 257 67.3
ECA246G0085 Erigeron canadensis HOM05D005681 ORTHO05D007274 3.5e-81 305.8 261 63.2
Dinv30480 Davidia involucrata HOM05D005681 ORTHO05D007274 1.7e-80 303.5 261 59.8
Gohir.D06G095800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 2.3e-80 303.1 205 71.2
A01p05570 Brassica napus HOM05D005681 ORTHO05D007274 3.9e-80 302.4 274 60.6
BcaC09g52069 Brassica carinata HOM05D005681 ORTHO05D007274 6.6e-80 301.6 274 60.6
Os02g0272400 Oryza sativa ssp. japonica HOM05D005681 ORTHO05D007274 7.3e-79 298.1 280 55.0
BolC7t46377H Brassica oleracea HOM05D005681 ORTHO05D007274 6.2e-78 295.0 211 71.1
CsaV3_2G031020 Cucumis sativus L. HOM05D005681 ORTHO05D007274 1.8e-77 293.5 199 71.9
Zm00001eb203450 Zea mays HOM05D005681 ORTHO05D007274 2.9e-75 286.2 300 51.0
Duzib168G1957 Durio zibethinus HOM05D005681 ORTHO05D007274 2.3e-72 276.6 275 54.5
Lsat_1_v5_gn_1_49740 Lactuca sativa HOM05D005681 ORTHO05D007274 4.3e-71 272.3 279 53.8
AagrBONN_evm.TU.Sc2ySwM_362.2150 Anthoceros agrestis HOM05D005681 ORTHO05D007274 1.1e-69 267.7 276 51.8
CDE04G0437 Ceratophyllum demersum HOM05D005681 ORTHO05D007274 3.4e-68 262.7 264 51.9
Mapoly0093s0011 Marchantia polymorpha HOM05D005681 ORTHO05D007274 4.6e-65 252.3 272 51.1
BcaNung03601 Brassica carinata HOM05D005681 ORTHO05D007274 3.3e-63 246.1 256 55.5
Pp3c7_12500 Physcomitrium patens HOM05D005681 ORTHO05D007274 1.1e-61 241.1 275 47.3
Pp3c2_21260 Physcomitrium patens HOM05D005681 ORTHO05D007274 2.5e-58 229.9 278 48.9
Oeu008286.1 Olea europaea HOM05D005681 ORTHO05D007274 9.3e-58 228.0 154 71.4
DCAR_000748 Daucus carota HOM05D005681 ORTHO05D007274 3.5e-57 226.1 150 70.7
SMO347G0207 Selaginella moellendorffii HOM05D005681 ORTHO05D007274 1.5e-55 220.7 277 45.1
Oeu008289.1 Olea europaea HOM05D005681 ORTHO05D007274 3.3e-55 219.5 154 69.5
BcaNung04523 Brassica carinata HOM05D005681 ORTHO05D007274 1.1e-50 204.5 218 54.6
BraA01t00528Z Brassica rapa HOM05D005681 ORTHO05D007274 2.5e-50 203.4 147 71.4
C07p59310 Brassica napus HOM05D005681 ORTHO05D007274 2.1e-49 200.3 267 48.3
AUR62043618 Chenopodium quinoa HOM05D005681 ORTHO05D007274 1.4e-42 177.6 118 75.4
Oeu012191.1 Olea europaea HOM05D005681 ORTHO05D007274 1.3e-38 164.5 133 62.4
MBI01_g30752_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 7.7e-36 155.2 144 57.6
Oeu031829.2 Olea europaea HOM05D005681 ORTHO05D007274 5.5e-18 95.9 125 42.4
ATR0051G031 Amborella trichopoda HOM05D005681 ORTHO05D007274 2.1e-17 94.0 98 50.0
A03p61560 Brassica napus HOM05D005681 ORTHO05D040333 1.6e-12 77.8 251 32.3
BraA03t15198Z Brassica rapa HOM05D005681 ORTHO05D040333 1.2e-07 61.6 188 32.4
CBR_g36838 Chara braunii HOM05D005681 ORTHO05D007274 3.7e-06 56.6 138 33.3


User provided reference genes

Program Settings