Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 2.0e-250 868.6 433 100.0
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 2.2e-185 652.5 428 76.9
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 4.7e-167 591.7 361 80.3
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.0e-166 590.5 361 79.8
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 3.0e-161 572.4 335 82.4
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.2e-159 567.0 389 72.5
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 2.2e-156 556.2 352 76.7
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 8.3e-156 554.3 359 78.3
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 5.4e-155 551.6 378 72.0
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 5.4e-155 551.6 378 72.0
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 9.2e-155 550.8 381 72.4
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.1e-154 549.7 372 74.5
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 1.0e-153 547.4 352 76.1
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 1.7e-153 546.6 383 71.0
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.7e-153 546.6 379 73.9
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 2.3e-153 546.2 364 72.8
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 1.1e-152 543.9 352 75.0
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 1.9e-152 543.1 357 75.1
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.3e-152 542.3 354 74.3
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.6e-151 540.0 412 67.2
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 2.1e-151 539.7 373 72.1
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 6.2e-151 538.1 354 74.3
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 1.1e-150 537.3 360 73.1
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.1e-150 537.3 360 73.1
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 1.8e-150 536.6 350 74.3
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 1.8e-150 536.6 359 73.8
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 8.9e-150 534.3 350 74.6
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.2e-149 533.9 349 74.8
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 1.2e-149 533.9 352 76.4
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 1.5e-149 533.5 358 73.2
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 2.6e-149 532.7 349 74.8
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.7e-148 530.0 361 73.4
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 1.7e-148 530.0 347 73.8
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.2e-148 529.6 360 72.5
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 6.4e-148 528.1 369 71.5
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.9e-147 526.6 350 74.0
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 5.4e-147 525.0 359 71.9
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.4e-147 525.0 366 71.0
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 1.2e-146 523.9 385 68.8
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.2e-146 523.9 447 61.7
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 1.2e-146 523.9 353 72.2
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 2.1e-146 523.1 351 74.4
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 2.1e-146 523.1 391 68.3
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 2.1e-146 523.1 360 73.9
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 3.5e-146 522.3 352 73.3
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 4.6e-146 521.9 384 69.0
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 6.0e-146 521.5 357 71.4
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 7.8e-146 521.2 352 72.7
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 2.3e-145 519.6 359 72.1
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 3.0e-145 519.2 364 69.5
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 5.1e-145 518.5 352 72.4
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 3.3e-144 515.8 350 71.4
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 9.5e-144 514.2 350 71.1
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 2.1e-143 513.1 411 65.5
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.8e-143 512.7 350 70.9
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 3.6e-143 512.3 353 71.7
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 1.8e-142 510.0 357 70.9
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.0e-142 508.8 378 68.0
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 5.2e-142 508.4 412 62.9
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 2.0e-141 506.5 414 63.8
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 2.2e-140 503.1 359 68.5
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 8.4e-140 501.1 360 67.5
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 1.4e-139 500.4 364 67.3
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 1.4e-139 500.4 349 70.8
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 4.2e-139 498.8 367 66.8
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 4.2e-139 498.8 354 68.6
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 7.1e-139 498.0 378 64.8
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 7.1e-139 498.0 354 68.6
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 9.2e-139 497.7 359 68.0
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 1.2e-138 497.3 359 67.4
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 2.7e-138 496.1 375 68.5
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 2.7e-138 496.1 336 71.7
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.7e-137 493.4 336 74.7
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 2.3e-137 493.0 305 77.4
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 2.3e-137 493.0 359 66.3
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 3.0e-137 492.7 384 64.6
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 3.9e-137 492.3 358 67.0
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 8.7e-137 491.1 375 67.2
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 4.3e-136 488.8 347 67.4
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 4.3e-136 488.8 434 58.5
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 7.3e-136 488.0 303 76.9
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 9.6e-136 487.6 360 67.5
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 9.6e-136 487.6 350 69.7
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 1.3e-135 487.3 356 66.3
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 2.1e-135 486.5 412 60.2
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 4.8e-135 485.3 348 67.8
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 4.8e-135 485.3 351 67.0
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 8.1e-135 484.6 372 64.8
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 8.1e-135 484.6 386 63.2
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 2.4e-134 483.0 347 66.9
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 4.0e-134 482.3 358 64.8
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 9.0e-134 481.1 303 75.2
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 9.0e-134 481.1 351 66.7
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.5e-133 480.3 351 67.8
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 5.8e-133 478.4 377 62.9
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 7.6e-133 478.0 346 66.2
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 4.9e-132 475.3 353 64.3
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 2.7e-130 469.5 358 63.4
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 3.5e-130 469.2 278 80.9
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.5e-130 469.2 312 73.7
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 8.7e-129 464.5 362 65.2
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 9.6e-128 461.1 303 73.6
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 9.6e-128 461.1 304 72.7
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 2.1e-127 459.9 318 72.3
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 2.4e-126 456.4 327 69.1
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 6.9e-126 454.9 325 67.7
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 5.8e-125 451.8 332 65.4
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 5.8e-125 451.8 325 67.7
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 3.8e-124 449.1 397 59.7
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 3.5e-122 442.6 264 80.3
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 3.5e-122 442.6 359 61.6
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.3e-120 436.0 337 66.5
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 7.6e-117 424.9 366 59.0
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 2.5e-115 419.9 325 63.1
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 2.5e-115 419.9 367 61.3
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 8.4e-108 394.8 556 41.2
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 5.5e-107 392.1 381 52.8
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 1.6e-106 390.6 250 73.6
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 7.9e-106 388.3 246 75.6
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 5.3e-102 375.6 291 68.0
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.2e-101 374.4 222 82.9
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.0e-101 373.6 378 54.2
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.3e-100 370.9 262 71.0
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 7.2e-99 365.2 380 53.7
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 1.2e-98 364.4 241 75.5
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 3.6e-98 362.8 381 53.5
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 6.1e-98 362.1 250 72.4
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.0e-97 361.3 415 48.4
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 9.1e-94 348.2 390 47.9
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.2e-93 347.8 325 57.2
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 1.5e-93 347.4 289 62.6
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 1.6e-90 337.4 352 52.6
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 7.9e-90 335.1 220 77.3
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 3.3e-88 329.7 242 67.4
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 4.4e-88 329.3 298 55.0
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 2.2e-87 327.0 356 50.0
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 8.2e-87 325.1 211 73.0
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 5.5e-83 312.4 266 60.9
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 4.4e-80 302.8 229 66.8
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.2e-77 294.7 195 74.9
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 5.9e-77 292.4 281 51.2
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 3.8e-76 289.7 193 69.4
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 7.2e-75 285.4 197 73.6
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 9.4e-75 285.0 303 51.5
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 5.2e-73 279.3 332 48.2
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.8e-71 272.7 195 71.3
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.5e-64 251.1 197 65.5
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 9.1e-62 241.9 135 84.4
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 3.3e-51 206.8 161 65.8
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 5.2e-49 199.5 125 76.0
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 1.6e-45 188.0 235 46.8
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 1.1e-43 181.8 255 43.5
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 6.2e-42 176.0 118 72.9
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 3.1e-41 173.7 381 31.0
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.0e-36 158.7 303 30.0
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.3e-36 157.5 336 36.0
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 5.1e-36 156.4 225 38.2
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 6.2e-34 149.4 155 48.4
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 1.1e-33 148.7 90 76.7
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.8e-25 121.3 219 32.9
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 6.9e-17 92.8 85 55.3
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 5.8e-16 89.7 69 59.4
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 7.6e-16 89.4 102 52.0
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 1.3e-15 88.6 69 59.4
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 7.1e-14 82.8 44 84.1
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 3.9e-12 77.0 67 55.2
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.5e-11 75.1 57 54.4
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 8.1e-10 69.3 78 52.6
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 9.0e-09 65.9 50 62.0
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 7.6e-08 62.8 55 54.5
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.9e-07 60.8 55 52.7


User provided reference genes

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