Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 0.0e+00 2136.7 1076 100.0
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 9.9e-283 977.2 1220 51.5
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.0e-226 791.2 1230 45.0
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 4.7e-192 676.0 1204 41.9
AUR62043520 Chenopodium quinoa HOM05D012164 ORTHO05D003767 4.0e-175 619.8 1192 40.6
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.2e-171 608.2 1091 40.5
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.8e-151 541.2 1287 36.6
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 3.0e-98 364.4 1174 32.5
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 2.4e-58 231.9 1212 28.4
Ah.16g105450 Amaranthus hybridus HOM05D012164 ORTHO05D003767 9.9e-41 173.3 228 50.0
Ah.16g105410 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.3e-24 119.8 86 72.1
Ah.16g105510 Amaranthus hybridus HOM05D012164 ORTHO05D003767 2.9e-24 118.6 230 40.9
Sc23g0005170 Simmondsia chinensis HOM05D012164 ORTHO05D003767 8.4e-24 117.1 1092 24.0
Ah.16g105520 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.9e-23 115.9 86 69.8
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 3.5e-22 111.7 939 23.4
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 1.3e-19 103.2 1085 23.4
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 5.9e-17 94.4 615 23.3
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 1.0e-16 93.6 944 24.0
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 8.5e-16 90.5 1307 22.0
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 1.4e-15 89.7 844 23.0
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 1.4e-15 89.7 844 23.0
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 9.4e-15 87.0 1207 22.7
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 1.2e-14 86.7 138 35.5
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 2.7e-14 85.5 1091 22.4
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 3.6e-14 85.1 322 27.6
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 4.6e-14 84.7 1100 22.6
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 4.6e-14 84.7 1094 22.2
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 6.1e-14 84.3 82 46.3
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 1.0e-13 83.6 1090 22.1
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.0e-13 83.6 171 35.1
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.0e-13 83.6 145 35.9
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 2.3e-13 82.4 923 22.2
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 3.0e-13 82.0 635 23.6
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 3.0e-13 82.0 92 47.8
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 3.9e-13 81.6 1286 22.3
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 3.9e-13 81.6 92 47.8
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 5.1e-13 81.3 1010 23.3
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 1.1e-12 80.1 1070 22.3
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.1e-12 80.1 331 26.9
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.1e-12 80.1 1223 22.1
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.5e-12 79.7 1149 22.5
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 1.5e-12 79.7 81 51.9
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 2.5e-12 79.0 1071 21.8
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 2.5e-12 79.0 187 33.7
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 4.3e-12 78.2 349 22.3
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 4.3e-12 78.2 96 41.7
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 5.7e-12 77.8 1293 22.3
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 5.7e-12 77.8 165 29.1
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 9.7e-12 77.0 70 50.0
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 9.7e-12 77.0 88 45.5
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 9.7e-12 77.0 190 31.6
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 1.7e-11 76.3 1285 22.5
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 2.2e-11 75.9 1122 22.7
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 2.8e-11 75.5 617 24.8
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 3.7e-11 75.1 81 49.4
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 4.8e-11 74.7 1066 23.2
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 6.3e-11 74.3 390 23.8
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 6.3e-11 74.3 78 41.0
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 6.3e-11 74.3 75 49.3
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 8.2e-11 73.9 217 29.0
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.1e-10 73.6 100 35.0
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.1e-10 73.6 637 23.2
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.1e-10 73.6 82 45.1
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.4e-10 73.2 100 36.0
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.4e-10 73.2 233 29.2
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.8e-10 72.8 332 26.8
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.8e-10 72.8 162 32.1
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.8e-10 72.8 262 26.0
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 3.1e-10 72.0 759 22.3
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 3.1e-10 72.0 76 43.4
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 4.1e-10 71.6 1147 20.8
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 4.1e-10 71.6 53 56.6
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 5.3e-10 71.2 81 42.0
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 5.3e-10 71.2 1126 22.3
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 5.3e-10 71.2 104 37.5
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 6.9e-10 70.9 128 37.5
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 6.9e-10 70.9 120 38.3
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 9.1e-10 70.5 86 41.9
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 1.2e-09 70.1 86 38.4
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.2e-09 70.1 78 44.9
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 1.5e-09 69.7 142 33.8
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.5e-09 69.7 142 33.8
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.5e-09 69.7 78 44.9
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 2.0e-09 69.3 72 45.8
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 2.0e-09 69.3 981 22.0
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 3.4e-09 68.6 1199 22.5
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 4.5e-09 68.2 72 45.8
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 4.5e-09 68.2 66 48.5
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 7.7e-09 67.4 82 45.1
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 1.3e-08 66.6 93 35.5
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.7e-08 66.2 135 31.9
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 1.7e-08 66.2 224 28.6
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 2.2e-08 65.9 78 42.3
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 2.2e-08 65.9 1206 22.1
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.9e-08 65.5 72 45.8
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 3.8e-08 65.1 294 25.5
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 3.8e-08 65.1 78 46.2
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.8e-08 65.1 82 36.6
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 3.8e-08 65.1 643 23.8
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 5.0e-08 64.7 59 50.8
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 5.0e-08 64.7 76 40.8
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 5.0e-08 64.7 226 28.3
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 5.0e-08 64.7 159 31.4
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 6.5e-08 64.3 1212 21.9
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 6.5e-08 64.3 139 33.1
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 8.5e-08 63.9 58 48.3
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 1.1e-07 63.5 67 40.3
Glyma.17G195000 Glycine max HOM05D004021 ORTHO05D003767 1.1e-07 63.5 80 41.2
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 1.1e-07 63.5 1147 22.1
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 1.9e-07 62.8 1095 22.2
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.9e-07 62.8 1133 21.5
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 1.9e-07 62.8 1266 22.7
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 2.5e-07 62.4 895 21.8
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.5e-07 62.4 1260 21.7
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 2.5e-07 62.4 78 41.0
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 2.5e-07 62.4 62 45.2
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 4.2e-07 61.6 629 22.6
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 4.2e-07 61.6 1276 22.6
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 5.5e-07 61.2 696 23.6
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 5.5e-07 61.2 68 38.2
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 7.2e-07 60.8 65 50.8
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.1e-06 59.3 575 23.3
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 2.7e-06 58.9 626 23.6
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 3.6e-06 58.5 313 26.2
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 3.6e-06 58.5 59 44.1
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 4.7e-06 58.2 904 22.8
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.7e-06 58.2 1251 22.1
unitig_85.g27153 Utricularia gibba HOM05D004021 ORTHO05D003767 4.7e-06 58.2 52 46.2
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 4.7e-06 58.2 67 40.3
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 6.1e-06 57.8 1194 20.6
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 7.9e-06 57.4 91 36.3
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 7.9e-06 57.4 140 31.4


User provided reference genes

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