Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g034430 Amaranthus hybridus HOM05D002307 ORTHO05D002378 3.7e-62 242.3 227 100.0
EL10Ac2g03893 Beta vulgaris HOM05D002307 ORTHO05D002378 1.1e-45 187.6 239 77.0
Hund03343 Selenicereus undatus HOM05D002307 ORTHO05D002378 2.3e-32 143.3 244 70.9
Hund19459 Selenicereus undatus HOM05D002307 ORTHO05D002378 3.0e-32 142.9 232 47.0
Ah.11g044750 Amaranthus hybridus HOM05D002307 ORTHO05D002378 6.8e-32 141.7 227 47.1
Duzib106G1267 Durio zibethinus HOM05D002307 ORTHO05D002378 1.1e-18 97.8 241 46.9
Sc09g0005930 Simmondsia chinensis HOM05D002307 ORTHO05D002378 4.3e-18 95.9 234 50.0
COL.COLO4_09862 Corchorus olitorius HOM05D002307 ORTHO05D002378 5.6e-18 95.5 244 35.7
Thecc.10G087300 Theobroma cacao HOM05D002307 ORTHO05D002378 2.1e-17 93.6 245 33.9
Lj5g0022127 Lotus japonicus HOM05D002307 ORTHO05D002378 1.8e-16 90.5 205 40.5
CiPaw.02G170800 Carya illinoinensis HOM05D002307 ORTHO05D002378 5.2e-16 89.0 209 45.0
QL08p053335 Quercus lobata HOM05D002307 ORTHO05D002378 5.2e-16 89.0 220 48.2
Rhsim03G0112500 Rhododendron simsii HOM05D002307 ORTHO05D002378 5.2e-16 89.0 243 30.0
RhsimUnG0033000 Rhododendron simsii HOM05D002307 ORTHO05D002378 6.8e-16 88.6 243 30.0
Phvul.007G139200 Phaseolus vulgaris HOM05D002307 ORTHO05D002378 3.4e-15 86.3 204 45.6
Cc02_g10710 Coffea canephora HOM05D002307 ORTHO05D002378 4.4e-15 85.9 248 29.4
Duzib114G0495 Durio zibethinus HOM05D002307 ORTHO05D002378 5.7e-15 85.5 248 39.1
Glyma.10G196500 Glycine max HOM05D002307 ORTHO05D002378 9.8e-15 84.7 200 39.0
Glyma.20G193700 Glycine max HOM05D002307 ORTHO05D002378 1.7e-14 84.0 202 43.1
FAN03G3366 Fragaria x ananassa HOM05D002307 ORTHO05D002378 3.7e-14 82.8 245 39.2
Cfa001785 Carpinus fangiana HOM05D002307 ORTHO05D002378 6.4e-14 82.0 204 47.1
CiPaw.01G266500 Carya illinoinensis HOM05D002307 ORTHO05D002378 6.4e-14 82.0 202 47.0
FvH4_7g18380 Fragaria vesca HOM05D002307 ORTHO05D002378 1.1e-13 81.3 247 34.8
FAN06G2797 Fragaria x ananassa HOM05D002307 ORTHO05D002378 1.1e-13 81.3 247 34.8
Gohir.D10G208601 Gossypium hirsutum HOM05D002307 ORTHO05D002378 1.4e-13 80.9 225 33.8
Medtr1g090663 Medicago truncatula HOM05D002307 ORTHO05D002378 1.4e-13 80.9 203 37.4
Ciclev10032527m.g Citrus clementina HOM05D002307 ORTHO05D002378 2.4e-13 80.1 243 43.2
FAN10G1030 Fragaria x ananassa HOM05D002307 ORTHO05D002378 2.4e-13 80.1 245 38.8
RcHm_v2.0_Chr1g0362191 Rosa chinensis HOM05D002307 ORTHO05D002378 4.1e-13 79.3 245 52.2
THA.LOC104826385 Tarenaya hassleriana HOM05D002307 ORTHO05D002378 4.1e-13 79.3 243 32.9
FAN06G4622 Fragaria x ananassa HOM05D002307 ORTHO05D002378 5.4e-13 79.0 247 34.4
TAR369G0156 Trochodendron aralioides HOM05D002307 ORTHO05D002378 5.4e-13 79.0 244 37.3
FAN10G3682 Fragaria x ananassa HOM05D002307 ORTHO05D002378 9.2e-13 78.2 196 40.3
Gorai.011G234500 Gossypium raimondii HOM05D002307 ORTHO05D002378 9.2e-13 78.2 225 29.3
Oeu051654.1 Olea europaea HOM05D002307 ORTHO05D002378 9.2e-13 78.2 228 31.1
TPR.G37772 Trifolium pratense HOM05D002307 ORTHO05D002378 9.2e-13 78.2 229 34.9
Oeu010019.1 Olea europaea HOM05D002307 ORTHO05D002378 1.6e-12 77.4 233 33.0
Ca_10436_v3 Cicer arietinum L. HOM05D002307 ORTHO05D002378 2.0e-12 77.0 203 37.4
Gohir.A10G200900 Gossypium hirsutum HOM05D002307 ORTHO05D002378 2.0e-12 77.0 225 29.8
VMungo0720G2779 Vigna mungo HOM05D002307 ORTHO05D002378 2.0e-12 77.0 221 42.5
Atru.chr12.882 Acer truncatum HOM05D002307 ORTHO05D002378 2.7e-12 76.6 239 47.7
Lalb_Chr02g0151011 Lupinus albus HOM05D002307 ORTHO05D002378 3.5e-12 76.3 199 42.7
Cpa.g.sc53.154 Carica papaya HOM05D002307 ORTHO05D002378 4.6e-12 75.9 235 32.8
THA.LOC104800578 Tarenaya hassleriana HOM05D002307 ORTHO05D002378 5.9e-12 75.5 249 34.5
CAN.G459.29 Capsicum annuum HOM05D002307 ORTHO05D002378 7.8e-12 75.1 205 40.0
Dinv31246 Davidia involucrata HOM05D002307 ORTHO05D002378 7.8e-12 75.1 237 54.0
Dinv36374 Davidia involucrata HOM05D002307 ORTHO05D002378 7.8e-12 75.1 204 36.8
Gohir.A08G200800 Gossypium hirsutum HOM05D002307 ORTHO05D002378 7.8e-12 75.1 254 37.0
FAN01G3055 Fragaria x ananassa HOM05D002307 ORTHO05D002378 1.0e-11 74.7 200 39.0
QL01p015252 Quercus lobata HOM05D002307 ORTHO05D002378 1.0e-11 74.7 206 35.9
PGSC0003DMG400031075 Solanum tuberosum HOM05D002307 ORTHO05D002378 1.0e-11 74.7 209 39.2
CSS0033229 Camellia sinensis var. sinensis HOM05D002307 ORTHO05D002378 1.3e-11 74.3 195 43.6
BcaC01g06562 Brassica carinata HOM05D002307 ORTHO05D002378 1.7e-11 73.9 228 33.8
A03p10950 Brassica napus HOM05D002307 ORTHO05D002378 1.7e-11 73.9 228 33.8
C03p12610 Brassica napus HOM05D002307 ORTHO05D002378 1.7e-11 73.9 228 33.8
BolC3t13729H Brassica oleracea HOM05D002307 ORTHO05D002378 1.7e-11 73.9 228 33.8
BraA03t10405Z Brassica rapa HOM05D002307 ORTHO05D002378 1.7e-11 73.9 228 33.8
arahy.Tifrunner.gnm1.ann1.130PY3 Arachis hypogaea HOM05D002307 ORTHO05D002378 2.3e-11 73.6 217 40.6
Nitab4.5_0002285g0030 Nicotiana tabacum HOM05D002307 ORTHO05D002378 2.3e-11 73.6 207 42.5
Psat6g172320 Pisum sativum HOM05D002307 ORTHO05D002378 2.3e-11 73.6 232 28.4
Nitab4.5_0004987g0040 Nicotiana tabacum HOM05D002307 ORTHO05D002378 3.0e-11 73.2 210 39.0
arahy.Tifrunner.gnm1.ann1.RI8FGC Arachis hypogaea HOM05D002307 ORTHO05D002378 3.9e-11 72.8 214 41.1
Carub.0005s1068 Capsella rubella HOM05D002307 ORTHO05D002378 3.9e-11 72.8 238 32.4
Migut.F01942 Erythranthe guttata HOM05D002307 ORTHO05D002378 3.9e-11 72.8 222 33.3
AT3G44940 Arabidopsis thaliana HOM05D002307 ORTHO05D002378 5.0e-11 72.4 238 39.9
Manes.07G094900 Manihot esculenta HOM05D002307 ORTHO05D002378 5.0e-11 72.4 200 57.0
Manes.10G051600 Manihot esculenta HOM05D002307 ORTHO05D002378 6.6e-11 72.0 187 48.1
Prupe.2G205900 Prunus persica HOM05D002307 ORTHO05D002378 8.6e-11 71.6 201 35.8
Sopen11g003930 Solanum pennellii HOM05D002307 ORTHO05D002378 8.6e-11 71.6 209 35.4
THA.LOC104810881 Tarenaya hassleriana HOM05D002307 ORTHO05D002378 8.6e-11 71.6 195 46.2
BcaC09g49668 Brassica carinata HOM05D002307 ORTHO05D002378 1.1e-10 71.2 197 34.5
C01p34050 Brassica napus HOM05D002307 ORTHO05D002378 1.1e-10 71.2 197 34.5
BolC1t03375H Brassica oleracea HOM05D002307 ORTHO05D002378 1.1e-10 71.2 197 34.5
CSS0018989 Camellia sinensis var. sinensis HOM05D002307 ORTHO05D002378 1.1e-10 71.2 203 29.6
ECA232G4966 Erigeron canadensis HOM05D002307 ORTHO05D002378 1.1e-10 71.2 216 35.6
BcaB01g04687 Brassica carinata HOM05D002307 ORTHO05D002378 1.5e-10 70.9 227 32.6
CARHR151020 Cardamine hirsuta HOM05D002307 ORTHO05D002378 1.5e-10 70.9 236 39.0
Solyc11g008080.3 Solanum lycopersicum HOM05D002307 ORTHO05D002378 1.5e-10 70.9 212 40.6
TAR633G1307 Trochodendron aralioides HOM05D002307 ORTHO05D002378 1.5e-10 70.9 252 36.9
Aqoxy2G01674 Aquilegia oxysepala HOM05D002307 ORTHO05D002378 2.5e-10 70.1 214 33.6
MD01G1100200 Malus domestica HOM05D002307 ORTHO05D002378 2.5e-10 70.1 221 38.0
Sabra08G0021400 Salix brachista HOM05D002307 ORTHO05D002378 2.5e-10 70.1 247 33.2
THA.LOC104799521 Tarenaya hassleriana HOM05D002307 ORTHO05D002378 2.5e-10 70.1 214 40.2
Sp5g16290 Schrenkiella parvula HOM05D002307 ORTHO05D002378 3.3e-10 69.7 236 36.9
Aa31LG4G14170 Aethionema arabicum HOM05D002307 ORTHO05D002378 5.6e-10 68.9 198 49.0
CANSAT56G3556 Cannabis sativa HOM05D002307 ORTHO05D002378 5.6e-10 68.9 105 52.4
Manes.04G013500 Manihot esculenta HOM05D002307 ORTHO05D002378 5.6e-10 68.9 197 35.5
Potri.008G032500 Populus trichocarpa HOM05D002307 ORTHO05D002378 5.6e-10 68.9 240 31.2
vmacro07190 Vaccinium macrocarpon HOM05D002307 ORTHO05D002378 5.6e-10 68.9 255 26.7
MSTRG.27494 Avicennia marina HOM05D002307 ORTHO05D002378 7.3e-10 68.6 241 31.5
Carub.0004s0894 Capsella rubella HOM05D002307 ORTHO05D002378 7.3e-10 68.6 201 29.4
Glyma.03G064100 Glycine max HOM05D002307 ORTHO05D002378 7.3e-10 68.6 70 52.9
Hma1.2p1_0117F.1_g056380 Hydrangea macrophylla HOM05D002307 ORTHO05D002378 7.3e-10 68.6 233 33.5
Hma1.2p1_2599F.1_g325170 Hydrangea macrophylla HOM05D002307 ORTHO05D002378 7.3e-10 68.6 233 33.5
A01p26700 Brassica napus HOM05D002307 ORTHO05D002378 9.5e-10 68.2 235 30.6
BraA01t02600Z Brassica rapa HOM05D002307 ORTHO05D002378 9.5e-10 68.2 235 30.6
SGA_v2.0_scaffold62G21376 Striga asiatica HOM05D002307 ORTHO05D002378 9.5e-10 68.2 75 48.0
AL5G23410 Arabidopsis lyrata HOM05D002307 ORTHO05D002378 1.2e-09 67.8 237 40.5
Thhalv10002925m.g Eutrema salsugineum HOM05D002307 ORTHO05D002378 2.1e-09 67.0 239 33.1
MD07G1167100 Malus domestica HOM05D002307 ORTHO05D002378 2.1e-09 67.0 215 34.4
Lsat_1_v5_gn_9_71481 Lactuca sativa HOM05D002307 ORTHO05D002378 2.8e-09 66.6 201 35.3
Sp4g10950 Schrenkiella parvula HOM05D002307 ORTHO05D002378 2.8e-09 66.6 233 26.6
Actinidia06731 Actinidia chinensis HOM05D002307 ORTHO05D002378 3.6e-09 66.2 202 33.2
AT2G28140 Arabidopsis thaliana HOM05D002307 ORTHO05D002378 3.6e-09 66.2 233 26.6
PSO339G6240 Papaver somniferum HOM05D002307 ORTHO05D002378 3.6e-09 66.2 222 33.3
Potri.010G229200 Populus trichocarpa HOM05D002307 ORTHO05D002378 3.6e-09 66.2 201 40.3
BcaC02g10948 Brassica carinata HOM05D002307 ORTHO05D002378 6.2e-09 65.5 233 27.9
C04p23370 Brassica napus HOM05D002307 ORTHO05D002378 6.2e-09 65.5 233 27.9
Thhalv10017900m.g Eutrema salsugineum HOM05D002307 ORTHO05D002378 6.2e-09 65.5 232 31.0
Glyma.12G178200 Glycine max HOM05D002307 ORTHO05D002378 6.2e-09 65.5 198 34.8
HanXRQChr09g0253931 Helianthus annuus HOM05D002307 ORTHO05D002378 6.2e-09 65.5 216 34.3
Phvul.011G085800 Phaseolus vulgaris HOM05D002307 ORTHO05D002378 6.2e-09 65.5 199 34.2
EL10Ac9g22612 Beta vulgaris HOM05D002307 ORTHO05D002378 8.0e-09 65.1 257 50.2
Phvul.005G130700 Phaseolus vulgaris HOM05D002307 ORTHO05D002378 8.0e-09 65.1 197 34.0
Ca_01709_v3 Cicer arietinum L. HOM05D002307 ORTHO05D002378 1.4e-08 64.3 206 33.0
Haze_16760 Corylus avellana HOM05D002307 ORTHO05D002378 1.4e-08 64.3 55 81.8
Lj2C22T11 Lonicera japonica HOM05D002307 ORTHO05D002378 1.4e-08 64.3 203 27.6
FAN16G1458 Fragaria x ananassa HOM05D002307 ORTHO05D002378 1.8e-08 63.9 245 32.2
Gohir.D03G139200 Gossypium hirsutum HOM05D002307 ORTHO05D002378 2.3e-08 63.5 197 34.5
Aa31LG5G8000 Aethionema arabicum HOM05D002307 ORTHO05D002378 3.1e-08 63.2 200 32.5
HanXRQChr09g0248621 Helianthus annuus HOM05D002307 ORTHO05D002378 3.1e-08 63.2 205 35.1
CARHR190600 Cardamine hirsuta HOM05D002307 ORTHO05D002378 4.0e-08 62.8 227 31.7
CsaV3_2G021050 Cucumis sativus L. HOM05D002307 ORTHO05D002378 4.0e-08 62.8 237 32.1
Aqoxy1G01109 Aquilegia oxysepala HOM05D002307 ORTHO05D002378 5.2e-08 62.4 197 34.5
Medtr2g084270 Medicago truncatula HOM05D002307 ORTHO05D002378 5.2e-08 62.4 197 32.5
PSO063G4804 Papaver somniferum HOM05D002307 ORTHO05D002378 5.2e-08 62.4 224 31.2
VMungo1080G1897 Vigna mungo HOM05D002307 ORTHO05D002378 5.2e-08 62.4 199 33.7
MELO3C004975.2 Cucumis melo HOM05D002307 ORTHO05D002378 6.8e-08 62.0 195 33.8
MELO3C019842.2 Cucumis melo HOM05D002307 ORTHO05D002378 6.8e-08 62.0 236 30.9
MBI13_g33238_MAGBIO Magnolia biondii HOM05D002307 ORTHO05D002378 6.8e-08 62.0 195 42.1
Nn6g35238 Nelumbo nucifera HOM05D002307 ORTHO05D002378 6.8e-08 62.0 247 39.7
Aa31LG1G12800 Aethionema arabicum HOM05D002307 ORTHO05D002378 8.9e-08 61.6 223 31.8
Thhalv10014543m.g Eutrema salsugineum HOM05D002307 ORTHO05D002378 8.9e-08 61.6 230 35.7
VMungo1127G0698 Vigna mungo HOM05D002307 ORTHO05D002378 8.9e-08 61.6 204 37.3
CSS0003217 Camellia sinensis var. sinensis HOM05D002307 ORTHO05D002378 1.2e-07 61.2 198 33.3
Ciclev10029012m.g Citrus clementina HOM05D002307 ORTHO05D002378 1.2e-07 61.2 202 40.6
Gorai.003G145900 Gossypium raimondii HOM05D002307 ORTHO05D002378 1.2e-07 61.2 197 34.0
Lalb_Chr24g0394911 Lupinus albus HOM05D002307 ORTHO05D002378 1.2e-07 61.2 197 33.5
AL4G22010 Arabidopsis lyrata HOM05D002307 ORTHO05D002378 1.5e-07 60.8 189 27.5
CARHR120990 Cardamine hirsuta HOM05D002307 ORTHO05D002378 1.5e-07 60.8 207 27.5
TWI38G0139 Tripterygium wilfordii HOM05D002307 ORTHO05D002378 1.5e-07 60.8 242 40.9
PGR142G1473 Punica granatum HOM05D002307 ORTHO05D002378 2.0e-07 60.5 79 60.8
SHI08831 Sapria himalayana HOM05D002307 ORTHO05D002378 2.0e-07 60.5 223 26.5
Sp6g22460 Schrenkiella parvula HOM05D002307 ORTHO05D002378 2.0e-07 60.5 227 31.3
TPR.G5656 Trifolium pratense HOM05D002307 ORTHO05D002378 2.0e-07 60.5 63 71.4
HanXRQChr10g0304431 Helianthus annuus HOM05D002307 ORTHO05D002378 2.6e-07 60.1 213 32.4
Eucgr.B03932 Eucalyptus grandis HOM05D002307 ORTHO05D002378 3.4e-07 59.7 212 32.1
SEGI_37183 Sequoiadendron giganteum HOM05D016785 ORTHO05D002804 5.8e-07 58.9 70 62.9
Actinidia03694 Actinidia chinensis HOM05D002307 ORTHO05D002378 7.5e-07 58.5 212 26.9
BcaB08g36392 Brassica carinata HOM05D002307 ORTHO05D002378 7.5e-07 58.5 210 32.4
Carub.0006s2071 Capsella rubella HOM05D002307 ORTHO05D002378 1.3e-06 57.8 227 30.8
Haze_23709 Corylus avellana HOM05D002307 ORTHO05D002378 1.3e-06 57.8 197 38.6
Duzib168G1056 Durio zibethinus HOM05D002307 ORTHO05D002378 1.7e-06 57.4 72 61.1
Lj3P937T88 Lonicera japonica HOM05D002307 ORTHO05D002378 1.7e-06 57.4 71 63.4
PSO801G0220 Papaver somniferum HOM05D002307 ORTHO05D002378 1.7e-06 57.4 200 42.5
ATR0088G050 Amborella trichopoda HOM05D002307 ORTHO05D002378 2.2e-06 57.0 64 67.2
COL.COLO4_11105 Corchorus olitorius HOM05D002307 ORTHO05D002378 2.9e-06 56.6 197 39.6
SGA_v2.0_scaffold45G16970 Striga asiatica HOM05D002307 ORTHO05D002378 2.9e-06 56.6 240 32.1
Dinv16216 Davidia involucrata HOM05D002307 ORTHO05D002378 3.7e-06 56.2 196 33.2
PGR119G1574 Punica granatum HOM05D002307 ORTHO05D002378 3.7e-06 56.2 200 32.0
Sed0014202 Sechium edule HOM05D002307 ORTHO05D002378 4.9e-06 55.8 54 50.0
PSO339G1252 Papaver somniferum HOM05D002307 ORTHO05D002378 8.3e-06 55.1 200 45.5
HPP92_022599 Vanilla planifolia HOM05D002307 ORTHO05D002378 8.3e-06 55.1 200 39.0


User provided reference genes

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