Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g034420 Amaranthus hybridus HOM05D006276 ORTHO05D007724 3.6e-123 444.9 221 100.0
AUR62022071 Chenopodium quinoa HOM05D006276 ORTHO05D007724 6.3e-91 337.8 297 61.3
AUR62009155 Chenopodium quinoa HOM05D006276 ORTHO05D007724 6.1e-86 321.2 321 56.1
EL10Ac2g03891 Beta vulgaris HOM05D006276 ORTHO05D007724 4.1e-82 308.5 302 57.0
Hund19457 Selenicereus undatus HOM05D006276 ORTHO05D007724 1.1e-71 273.9 308 50.0
GSVIVG01035412001 Vitis vinifera HOM05D006276 ORTHO05D007724 1.8e-58 229.9 322 43.5
Dinv27981 Davidia involucrata HOM05D006276 ORTHO05D007724 4.5e-57 225.3 317 42.0
Hma1.2p1_0482F.1_g162490 Hydrangea macrophylla HOM05D006276 ORTHO05D007724 1.7e-56 223.4 316 42.1
QL02p001268 Quercus lobata HOM05D006276 ORTHO05D007724 3.2e-55 219.2 314 40.1
Manes.16G079900 Manihot esculenta HOM05D006276 ORTHO05D007724 1.6e-54 216.9 314 42.0
CiPaw.16G028900 Carya illinoinensis HOM05D006276 ORTHO05D007724 6.8e-53 211.5 313 39.9
Ciclev10008931m.g Citrus clementina HOM05D006276 ORTHO05D007724 6.8e-53 211.5 323 39.3
TAR626G0576 Trochodendron aralioides HOM05D006276 ORTHO05D007724 8.8e-53 211.1 323 39.3
MD15G1060500 Malus domestica HOM05D006276 ORTHO05D007724 1.5e-52 210.3 308 42.5
Oeu003983.2 Olea europaea HOM05D006276 ORTHO05D007724 2.0e-52 209.9 278 42.1
TAR383G0425 Trochodendron aralioides HOM05D006276 ORTHO05D007724 5.7e-52 208.4 320 40.6
MD08G1060900 Malus domestica HOM05D006276 ORTHO05D007724 7.5e-52 208.0 297 42.8
TWI34G0536 Tripterygium wilfordii HOM05D006276 ORTHO05D007724 9.8e-52 207.6 305 42.6
Duzib168G0463 Durio zibethinus HOM05D006276 ORTHO05D007724 2.8e-51 206.1 318 39.3
RcHm_v2.0_Chr6g0310851 Rosa chinensis HOM05D006276 ORTHO05D007724 6.3e-51 204.9 317 37.2
Thecc.09G053300 Theobroma cacao HOM05D006276 ORTHO05D007724 1.1e-50 204.1 323 38.7
Gohir.D05G044300 Gossypium hirsutum HOM05D006276 ORTHO05D007724 1.4e-50 203.8 285 42.1
Peaxi162Scf00247g00720 Petunia axillaris HOM05D006276 ORTHO05D007724 1.8e-50 203.4 314 39.5
Sopen11g028700 Solanum pennellii HOM05D006276 ORTHO05D007724 1.8e-50 203.4 315 39.7
Atru.chr7.1056 Acer truncatum HOM05D006276 ORTHO05D007724 2.4e-50 203.0 320 39.4
Aqoxy5G01259 Aquilegia oxysepala HOM05D006276 ORTHO05D007724 2.4e-50 203.0 318 39.0
COL.COLO4_21052 Corchorus olitorius HOM05D006276 ORTHO05D007724 3.1e-50 202.6 317 38.5
Solyc11g070020.3 Solanum lycopersicum HOM05D006276 ORTHO05D007724 3.1e-50 202.6 315 39.4
PSO210G3453 Papaver somniferum HOM05D006276 ORTHO05D007724 4.1e-50 202.2 319 40.1
PSO210G2260 Papaver somniferum HOM05D006276 ORTHO05D007724 5.4e-50 201.8 316 39.9
Potri.006G230000 Populus trichocarpa HOM05D006276 ORTHO05D007724 7.0e-50 201.4 314 40.8
FvH4_2g31970 Fragaria vesca HOM05D006276 ORTHO05D007724 9.1e-50 201.1 316 38.0
RcHm_v2.0_Chr6g0290791 Rosa chinensis HOM05D006276 ORTHO05D007724 9.1e-50 201.1 317 36.9
Eucgr.C03044 Eucalyptus grandis HOM05D006276 ORTHO05D007724 1.2e-49 200.7 323 38.1
CANSAT25G3436 Cannabis sativa HOM05D006276 ORTHO05D007724 2.0e-49 199.9 305 41.3
PGSC0003DMG400025517 Solanum tuberosum HOM05D006276 ORTHO05D007724 2.0e-49 199.9 315 38.1
Actinidia14712 Actinidia chinensis HOM05D006276 ORTHO05D007724 3.5e-49 199.1 305 38.7
arahy.Tifrunner.gnm1.ann1.PS3ZFP Arachis hypogaea HOM05D006276 ORTHO05D007724 3.5e-49 199.1 312 38.1
Actinidia01190 Actinidia chinensis HOM05D006276 ORTHO05D007724 7.7e-49 198.0 315 38.7
arahy.Tifrunner.gnm1.ann1.C6FL8N Arachis hypogaea HOM05D006276 ORTHO05D007724 7.7e-49 198.0 312 38.1
Cc08_g10550 Coffea canephora HOM05D006276 ORTHO05D007724 1.3e-48 197.2 311 38.6
Nitab4.5_0001107g0140 Nicotiana tabacum HOM05D006276 ORTHO05D007724 1.7e-48 196.8 315 37.8
CiPaw.15G039400 Carya illinoinensis HOM05D006276 ORTHO05D007724 2.2e-48 196.4 259 42.9
Lj5g0000642 Lotus japonicus HOM05D006276 ORTHO05D007724 3.8e-48 195.7 306 37.6
Nitab4.5_0003550g0010 Nicotiana tabacum HOM05D006276 ORTHO05D007724 3.8e-48 195.7 315 37.5
CsaV3_2G025580 Cucumis sativus L. HOM05D006276 ORTHO05D007724 1.5e-47 193.7 317 37.5
Glyma.17G229400 Glycine max HOM05D006276 ORTHO05D007724 1.9e-47 193.4 309 38.5
Gorai.009G045400 Gossypium raimondii HOM05D006276 ORTHO05D007724 2.5e-47 193.0 318 37.7
A10p25940 Brassica napus HOM05D006276 ORTHO05D007724 4.2e-47 192.2 305 39.7
Thhalv10014178m.g Eutrema salsugineum HOM05D006276 ORTHO05D007724 4.2e-47 192.2 312 37.8
Actinidia18190 Actinidia chinensis HOM05D006276 ORTHO05D007724 7.2e-47 191.4 308 37.7
Sc09g0009760 Simmondsia chinensis HOM05D006276 ORTHO05D007724 9.5e-47 191.0 279 41.9
DCAR_004430 Daucus carota HOM05D006276 ORTHO05D007724 1.2e-46 190.7 318 36.2
Migut.E01562 Erythranthe guttata HOM05D006276 ORTHO05D007724 1.2e-46 190.7 306 37.3
C09p65020 Brassica napus HOM05D006276 ORTHO05D007724 1.6e-46 190.3 307 38.1
Carub.0006s1034 Capsella rubella HOM05D006276 ORTHO05D007724 1.6e-46 190.3 312 37.8
PSO782G4309 Papaver somniferum HOM05D006276 ORTHO05D007724 1.6e-46 190.3 283 42.0
Rhsim07G0142500 Rhododendron simsii HOM05D006276 ORTHO05D007724 2.7e-46 189.5 315 38.7
BolC9t59330H Brassica oleracea HOM05D006276 ORTHO05D007724 3.6e-46 189.1 305 38.0
HanXRQChr17g0538201 Helianthus annuus HOM05D006276 ORTHO05D007724 4.7e-46 188.7 311 37.3
BraA10t44656Z Brassica rapa HOM05D006276 ORTHO05D007724 1.0e-45 187.6 307 38.1
Lsat_1_v5_gn_3_24381 Lactuca sativa HOM05D006276 ORTHO05D007724 1.0e-45 187.6 313 36.7
Lj7A273T8 Lonicera japonica HOM05D006276 ORTHO05D007724 1.4e-45 187.2 309 37.9
ClCG08G017020 Citrullus lanatus HOM05D006276 ORTHO05D007724 1.8e-45 186.8 317 36.9
PGR044G2277 Punica granatum HOM05D006276 ORTHO05D007724 1.8e-45 186.8 250 42.8
BraA03t09860Z Brassica rapa HOM05D006276 ORTHO05D007724 4.0e-45 185.7 303 38.3
A03p05210 Brassica napus HOM05D006276 ORTHO05D007724 8.8e-45 184.5 303 38.0
Sabra06G0178200 Salix brachista HOM05D006276 ORTHO05D007724 8.8e-45 184.5 360 34.7
C03p06010 Brassica napus HOM05D006276 ORTHO05D007724 1.2e-44 184.1 300 38.3
Sed0014483 Sechium edule HOM05D006276 ORTHO05D007724 1.2e-44 184.1 314 35.7
SHI18737 Sapria himalayana HOM05D006276 ORTHO05D007724 2.0e-44 183.3 307 36.8
BolC3t13112H Brassica oleracea HOM05D006276 ORTHO05D007724 2.6e-44 183.0 298 37.6
SGA_v2.0_scaffold169G38688 Striga asiatica HOM05D006276 ORTHO05D007724 2.6e-44 183.0 313 35.8
BcaC04g19193 Brassica carinata HOM05D006276 ORTHO05D007724 4.4e-44 182.2 312 37.2
PSO478G1664 Papaver somniferum HOM05D006276 ORTHO05D007724 4.4e-44 182.2 327 38.5
Sp6g31790 Schrenkiella parvula HOM05D006276 ORTHO05D007724 7.5e-44 181.4 303 37.3
Ca_13170_v3 Cicer arietinum L. HOM05D006276 ORTHO05D007724 1.7e-43 180.3 305 37.0
AT5G11810 Arabidopsis thaliana HOM05D006276 ORTHO05D007724 4.9e-43 178.7 309 35.6
SalBow1G4959 Salvia bowleyana HOM05D006276 ORTHO05D007724 4.9e-43 178.7 327 37.6
Medtr1g016410 Medicago truncatula HOM05D006276 ORTHO05D007724 6.3e-43 178.3 307 37.5
TPR.G13142 Trifolium pratense HOM05D006276 ORTHO05D007724 6.3e-43 178.3 303 38.6
MSTRG.11659 Avicennia marina HOM05D006276 ORTHO05D007724 1.1e-42 177.6 313 35.8
Phvul.001G034700 Phaseolus vulgaris HOM05D006276 ORTHO05D007724 1.1e-42 177.6 310 36.1
THA.LOC104811244 Tarenaya hassleriana HOM05D006276 ORTHO05D007724 1.4e-42 177.2 312 38.1
VMungo0647G0182 Vigna mungo HOM05D006276 ORTHO05D007724 2.4e-42 176.4 310 36.8
Lalb_Chr14g0367711 Lupinus albus HOM05D006276 ORTHO05D007724 3.1e-42 176.0 321 36.4
Sed0008348 Sechium edule HOM05D006276 ORTHO05D007724 9.2e-42 174.5 312 34.9
HPP92_004831 Vanilla planifolia HOM05D006276 ORTHO05D007724 1.6e-41 173.7 323 35.6
FAN24G2654 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.3e-40 170.6 390 31.3
Cfa017950 Carpinus fangiana HOM05D006276 ORTHO05D007724 1.7e-40 170.2 139 59.0
Lj7P276T14 Lonicera japonica HOM05D006276 ORTHO05D007724 3.8e-40 169.1 161 52.8
CDE06G0120 Ceratophyllum demersum HOM05D006276 ORTHO05D007724 1.6e-38 163.7 327 35.2
Cpa.g.sc7.176 Carica papaya HOM05D006276 ORTHO05D007724 1.8e-37 160.2 137 56.2
FAN20G3006 Fragaria x ananassa HOM05D006276 ORTHO05D007724 3.0e-37 159.5 268 35.8
CARHR201350 Cardamine hirsuta HOM05D006276 ORTHO05D007724 5.2e-37 158.7 142 54.2
ATR0564G292 Amborella trichopoda HOM05D006276 ORTHO05D007724 5.7e-36 155.2 298 35.6
Glyma.14G094000 Glycine max HOM05D006276 ORTHO05D007724 1.3e-35 154.1 138 52.2
FAN15G3491 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.7e-35 153.7 287 34.1
Nn3g20166 Nelumbo nucifera HOM05D006276 ORTHO05D007724 1.1e-34 151.0 144 52.8
CSS0027263 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 2.4e-34 149.8 143 53.8
Mapoly0103s0015 Marchantia polymorpha HOM05D006276 ORTHO05D007724 4.1e-34 149.1 317 31.2
AL6G22560 Arabidopsis lyrata HOM05D006276 ORTHO05D007724 5.4e-34 148.7 142 49.3
vmacro14246 Vaccinium macrocarpon HOM05D006276 ORTHO05D007724 9.2e-34 147.9 203 43.3
BcaB01g05452 Brassica carinata HOM05D006276 ORTHO05D007724 2.7e-33 146.4 302 34.4
Haze_18196 Corylus avellana HOM05D006276 ORTHO05D007724 2.7e-33 146.4 314 34.1
MELO3C010755.2 Cucumis melo HOM05D006276 ORTHO05D007724 4.6e-33 145.6 313 33.2
Zm00001eb231620 Zea mays HOM05D006276 ORTHO05D007724 1.3e-32 144.1 334 32.0
AagrBONN_evm.TU.Sc2ySwM_117.3789 Anthoceros agrestis HOM05D006276 ORTHO05D007724 1.9e-31 140.2 333 28.8
Aa31LG3G15390 Aethionema arabicum HOM05D006276 ORTHO05D007724 5.6e-31 138.7 313 31.3
Pp3c14_20160 Physcomitrium patens HOM05D006276 ORTHO05D007724 4.7e-30 135.6 323 31.0
Pp3c1_29470 Physcomitrium patens HOM05D006276 ORTHO05D007724 2.3e-29 133.3 319 31.0
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 5.2e-29 132.1 139 47.5
Os02g0135600 Oryza sativa ssp. japonica HOM05D006276 ORTHO05D007724 6.8e-29 131.7 143 46.2
CDE04G1132 Ceratophyllum demersum HOM05D000032 ORTHO05D002561 2.9e-27 126.3 155 46.5
SEGI_30057 Sequoiadendron giganteum HOM05D006276 ORTHO05D007724 9.2e-26 121.3 326 28.5
SMO117G0325 Selaginella moellendorffii HOM05D006276 ORTHO05D007724 2.7e-25 119.8 294 29.9
FAN27G2524 Fragaria x ananassa HOM05D006276 ORTHO05D007724 3.0e-24 116.3 110 49.1
Gohir.A05G042600 Gossypium hirsutum HOM05D006276 ORTHO05D007724 1.5e-23 114.0 258 31.8
Prupe.1G412500 Prunus persica HOM05D006276 ORTHO05D007724 7.3e-23 111.7 251 32.3
Thecc.08G113900 Theobroma cacao HOM05D006276 ORTHO05D007724 2.1e-22 110.2 194 37.1
PSO210G7329 Papaver somniferum HOM05D006276 ORTHO05D007724 1.4e-21 107.5 181 40.9
Psat6g020720 Pisum sativum HOM05D006276 ORTHO05D007724 1.2e-20 104.4 111 45.0
Oeu018645.1 Olea europaea HOM05D006276 ORTHO05D007724 5.6e-15 85.5 55 69.1
CSS0023315 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 6.0e-09 65.5 47 61.7
CSS0029180 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 6.0e-09 65.5 47 61.7
CARHR201360 Cardamine hirsuta HOM05D006276 ORTHO05D007724 4.3e-07 59.3 46 60.9


User provided reference genes

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