Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g034360 Amaranthus hybridus HOM05D000087 ORTHO05D005735 3.1e-47 191.4 96 100.0
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 3.6e-35 151.4 97 77.3
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 5.0e-29 131.0 101 69.3
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.5e-28 129.4 101 67.3
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 5.2e-26 120.9 96 65.6
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 8.6e-13 77.0 91 46.2
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 1.9e-12 75.9 84 47.6
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 5.6e-12 74.3 96 45.8
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 9.6e-12 73.6 91 46.2
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 9.6e-12 73.6 91 45.1
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 1.2e-11 73.2 85 48.2
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 1.6e-11 72.8 86 50.0
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 8.1e-11 70.5 84 47.6
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 1.1e-10 70.1 96 40.6
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 1.1e-10 70.1 75 56.0
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 1.4e-10 69.7 75 52.0
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 1.4e-10 69.7 88 40.9
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 1.8e-10 69.3 75 48.0
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 1.8e-10 69.3 84 46.4
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 2.4e-10 68.9 92 42.4
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 2.4e-10 68.9 84 45.2
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 3.1e-10 68.6 91 42.9
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 3.1e-10 68.6 91 42.9
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 4.0e-10 68.2 91 42.9
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 4.0e-10 68.2 86 51.2
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 5.2e-10 67.8 67 52.2
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 6.8e-10 67.4 92 42.4
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 6.8e-10 67.4 86 46.5
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 2.0e-09 65.9 90 44.4
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 2.0e-09 65.9 90 44.4
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 2.6e-09 65.5 93 46.2
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 3.4e-09 65.1 91 41.8
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 3.4e-09 65.1 68 50.0
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 4.4e-09 64.7 82 47.6
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 4.4e-09 64.7 90 43.3
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 4.4e-09 64.7 74 44.6
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 4.4e-09 64.7 74 45.9
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 5.8e-09 64.3 74 43.2
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 5.8e-09 64.3 85 42.4
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 5.8e-09 64.3 72 50.0
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 7.6e-09 63.9 82 39.0
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 9.9e-09 63.5 70 47.1
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 1.7e-08 62.8 84 44.0
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 1.7e-08 62.8 74 44.6
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 2.2e-08 62.4 74 40.5
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 2.2e-08 62.4 86 43.0
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 2.2e-08 62.4 83 43.4
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.9e-08 62.0 96 39.6
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 4.9e-08 61.2 67 47.8
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 8.4e-08 60.5 96 39.6
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 1.4e-07 59.7 74 41.9
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 3.2e-07 58.5 97 37.1
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 3.2e-07 58.5 85 41.2
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 3.2e-07 58.5 86 40.7
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 4.2e-07 58.2 74 41.9
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 5.4e-07 57.8 84 41.7
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 5.4e-07 57.8 86 39.5
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 1.2e-06 56.6 63 46.0
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 1.6e-06 56.2 73 41.1
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 1.6e-06 56.2 83 39.8
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 2.1e-06 55.8 79 43.0
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 6.0e-06 54.3 64 45.3
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 6.0e-06 54.3 84 39.3
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 7.8e-06 53.9 69 40.6
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 7.8e-06 53.9 68 38.2


User provided reference genes

Program Settings