Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 8.8e-73 276.9 148 100.0
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 1.6e-45 186.4 150 70.7
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.4e-33 146.7 123 63.4
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 2.1e-21 106.3 145 45.5
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 3.5e-21 105.5 162 43.8
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 3.5e-21 105.5 117 50.4
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 1.0e-20 104.0 97 57.7
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 1.3e-20 103.6 151 45.0
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 3.0e-20 102.4 97 56.7
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 5.1e-20 101.7 101 55.4
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 5.1e-20 101.7 152 48.0
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 6.6e-20 101.3 97 56.7
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 6.6e-20 101.3 114 50.0
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 8.6e-20 100.9 88 60.2
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 1.5e-19 100.1 84 60.7
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 1.9e-19 99.8 69 73.9
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 2.5e-19 99.4 83 62.7
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 4.3e-19 98.6 69 72.5
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 4.3e-19 98.6 119 52.9
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 9.5e-19 97.4 74 66.2
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 9.5e-19 97.4 74 64.9
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 1.2e-18 97.1 114 52.6
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 1.2e-18 97.1 112 51.8
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 1.2e-18 97.1 158 43.0
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 1.2e-18 97.1 151 43.7
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.6e-18 96.7 121 49.6
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 2.1e-18 96.3 117 50.4
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 2.8e-18 95.9 100 53.0
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 2.8e-18 95.9 141 45.4
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 6.2e-18 94.7 74 66.2
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 6.2e-18 94.7 74 62.2
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 1.1e-17 94.0 118 49.2
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 1.1e-17 94.0 66 74.2
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 2.3e-17 92.8 74 68.9
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 2.3e-17 92.8 87 57.5
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 2.3e-17 92.8 101 54.5
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 2.3e-17 92.8 101 54.5
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 5.2e-17 91.7 97 55.7
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 6.8e-17 91.3 77 63.6
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 8.9e-17 90.9 131 47.3
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 8.9e-17 90.9 132 44.7
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 1.2e-16 90.5 68 73.5
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 1.2e-16 90.5 68 73.5
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 1.5e-16 90.1 83 57.8
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 1.5e-16 90.1 72 63.9
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 1.5e-16 90.1 133 48.1
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 1.5e-16 90.1 97 54.6
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 2.0e-16 89.7 114 46.5
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 2.0e-16 89.7 110 50.0
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 2.0e-16 89.7 147 39.5
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 2.6e-16 89.4 81 60.5
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 3.4e-16 89.0 116 46.6
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 3.4e-16 89.0 73 63.0
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 4.4e-16 88.6 67 68.7
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 4.4e-16 88.6 148 41.9
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 4.4e-16 88.6 95 54.7
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 4.4e-16 88.6 154 38.3
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 5.8e-16 88.2 95 54.7
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 9.9e-16 87.4 95 54.7
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 9.9e-16 87.4 72 62.5
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 9.9e-16 87.4 108 46.3
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 2.9e-15 85.9 131 42.0
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 2.9e-15 85.9 114 50.9
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 3.7e-15 85.5 163 38.7
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 4.9e-15 85.1 132 45.5
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 6.4e-15 84.7 149 42.3
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 1.4e-14 83.6 76 57.9
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 2.4e-14 82.8 113 43.4
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 5.4e-14 81.6 142 44.4
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 7.1e-14 81.3 110 50.9
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 9.2e-14 80.9 67 67.2
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 9.2e-14 80.9 67 67.2
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 4.6e-13 78.6 61 55.7
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 6.0e-13 78.2 84 59.5
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 7.8e-13 77.8 84 57.1
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 1.7e-12 76.6 112 46.4
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 3.0e-12 75.9 111 50.5
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 3.0e-12 75.9 111 50.5
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 3.0e-12 75.9 119 39.5
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 1.9e-11 73.2 69 58.0
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 4.3e-11 72.0 59 72.9
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 4.3e-11 72.0 98 48.0
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 9.5e-11 70.9 59 71.2
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 4.7e-10 68.6 91 42.9
MD07G1069500 Malus domestica HOM05D007680 ORTHO05D009702 2.4e-09 66.2 100 40.0
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 5.2e-09 65.1 59 54.2
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 6.8e-09 64.7 66 57.6
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 4.4e-08 62.0 82 46.3
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 3.8e-07 58.9 34 70.6
SGA_v2.0_scaffold10G05320 Striga asiatica HOM05D007680 ORTHO05D009702 8.4e-07 57.8 46 54.3
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 8.4e-07 57.8 89 43.8


User provided reference genes

Program Settings