Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 2.8e-235 818.1 397 100.0
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 1.4e-186 656.4 396 82.8
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 6.9e-181 637.5 401 80.0
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 2.9e-179 632.1 401 79.6
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 3.5e-161 572.0 403 71.0
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 5.6e-159 564.7 403 70.2
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.6e-158 563.1 396 71.0
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 4.8e-158 561.6 401 70.6
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 4.8e-158 561.6 397 71.0
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.1e-157 560.5 343 77.3
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 1.8e-157 559.7 400 70.8
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 1.8e-157 559.7 396 71.0
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 1.8e-157 559.7 402 69.7
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 4.0e-157 558.5 399 69.7
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 4.0e-157 558.5 404 69.3
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 4.0e-157 558.5 401 69.8
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 5.3e-157 558.1 417 66.4
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 6.9e-157 557.8 399 70.4
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 5.8e-156 554.7 398 69.3
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 7.6e-156 554.3 403 69.2
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 1.0e-155 553.9 401 72.8
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 1.7e-155 553.1 403 69.2
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.7e-155 553.1 348 77.3
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 2.2e-155 552.7 401 69.6
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.8e-155 552.0 401 69.6
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.9e-155 551.6 399 69.7
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 6.5e-155 551.2 405 69.4
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 1.1e-154 550.4 337 77.2
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.4e-154 550.1 406 69.5
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 1.4e-154 550.1 401 69.8
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 4.2e-154 548.5 397 70.0
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 5.5e-154 548.1 399 69.4
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 7.1e-154 547.7 338 76.9
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 7.1e-154 547.7 404 68.3
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 9.3e-154 547.4 397 68.3
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.2e-153 547.0 337 77.2
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 1.2e-153 547.0 401 69.3
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.6e-153 546.6 370 72.2
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 2.7e-153 545.8 401 69.3
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 2.7e-153 545.8 407 66.8
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 3.5e-153 545.4 397 68.5
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 3.5e-153 545.4 404 67.8
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 3.5e-153 545.4 328 77.4
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 4.6e-153 545.0 407 66.8
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 4.6e-153 545.0 402 66.7
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 7.9e-153 544.3 397 69.0
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.3e-152 543.5 397 67.5
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.8e-152 543.1 407 66.1
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.8e-152 543.1 408 66.7
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 3.0e-152 542.3 398 67.8
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 3.0e-152 542.3 394 68.5
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 3.0e-152 542.3 401 68.1
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 3.9e-152 542.0 403 67.7
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 6.7e-152 541.2 405 66.9
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 8.7e-152 540.8 336 75.6
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 8.7e-152 540.8 399 68.2
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 1.1e-151 540.4 398 68.8
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 1.1e-151 540.4 398 68.8
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 1.1e-151 540.4 406 67.2
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 1.5e-151 540.0 402 66.9
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 1.5e-151 540.0 405 67.2
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 1.9e-151 539.7 399 66.9
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 1.9e-151 539.7 340 76.8
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 2.5e-151 539.3 398 68.8
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 2.5e-151 539.3 398 68.8
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 2.5e-151 539.3 341 75.7
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 3.3e-151 538.9 398 68.8
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 3.3e-151 538.9 406 68.0
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 7.4e-151 537.7 336 75.0
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 9.7e-151 537.3 399 67.2
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 9.7e-151 537.3 404 67.8
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 9.7e-151 537.3 334 76.3
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 9.7e-151 537.3 403 67.2
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.3e-150 537.0 400 67.5
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.1e-149 533.9 399 66.2
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 1.4e-149 533.5 402 65.7
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 1.8e-149 533.1 399 66.9
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 1.8e-149 533.1 349 72.5
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.8e-149 533.1 408 66.7
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 2.4e-149 532.7 384 69.0
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 9.0e-149 530.8 340 73.2
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 9.0e-149 530.8 404 65.1
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 1.5e-148 530.0 401 66.6
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.5e-148 530.0 402 67.2
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 2.0e-148 529.6 346 74.9
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 2.6e-148 529.3 335 74.9
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 4.5e-148 528.5 400 65.0
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 6.5e-147 524.6 328 75.3
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.9e-146 523.1 333 75.4
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 5.5e-146 521.5 336 74.7
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 5.5e-146 521.5 336 72.6
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 7.2e-146 521.2 408 64.7
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 7.2e-146 521.2 399 65.9
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 1.2e-145 520.4 395 66.3
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.2e-145 520.4 336 73.5
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 2.1e-145 519.6 408 64.7
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 2.1e-145 519.6 406 65.8
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 6.1e-145 518.1 408 64.5
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 6.1e-145 518.1 335 72.8
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 1.1e-143 513.8 334 71.3
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 1.7e-142 510.0 338 72.2
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 8.2e-142 507.7 387 65.4
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 1.1e-141 507.3 366 71.0
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 2.4e-141 506.1 408 64.0
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 3.4e-140 502.3 404 63.1
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 3.4e-140 502.3 338 70.7
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.0e-139 500.7 399 61.7
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 5.0e-139 498.4 336 71.4
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.1e-138 497.3 335 70.1
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 1.9e-138 496.5 397 65.0
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 5.5e-138 495.0 407 62.2
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 2.7e-137 492.7 329 70.5
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 3.9e-136 488.8 335 70.7
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 9.7e-135 484.2 373 65.7
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 2.0e-132 476.5 369 66.1
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 5.9e-132 474.9 411 61.8
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 2.2e-131 473.0 322 67.4
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 6.5e-131 471.5 331 71.6
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 1.4e-130 470.3 327 67.6
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 7.2e-130 468.0 379 62.0
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 1.2e-129 467.2 394 60.4
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 8.0e-129 464.5 337 67.1
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 2.3e-128 463.0 405 60.0
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 4.4e-127 458.8 369 65.0
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 4.4e-127 458.8 371 63.6
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 1.8e-125 453.4 269 77.7
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 1.6e-124 450.3 357 64.7
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 4.5e-124 448.7 311 67.8
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 2.9e-123 446.0 360 63.1
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 4.0e-120 435.6 315 62.5
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 2.0e-119 433.3 259 79.2
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.8e-118 429.5 314 61.5
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 3.7e-118 429.1 329 60.2
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 2.2e-115 419.9 333 59.8
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 2.7e-113 412.9 271 74.2
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 1.6e-108 397.1 336 55.1
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 3.5e-108 396.0 268 73.1
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 8.0e-105 384.8 336 61.3
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.4e-104 384.0 310 61.6
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.4e-101 374.0 236 77.5
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 5.0e-99 365.5 311 56.6
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 5.6e-98 362.1 399 49.6
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.0e-91 341.3 235 68.1
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.9e-90 337.0 214 75.2
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 4.3e-90 335.9 244 70.9
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 6.8e-88 328.6 214 72.4
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 5.8e-87 325.5 216 75.0
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 1.1e-74 284.6 195 72.8
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 3.3e-74 283.1 361 44.9
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 7.3e-74 282.0 219 66.7
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 1.6e-73 280.8 360 43.9
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 4.6e-68 262.7 314 46.8
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 3.9e-67 259.6 317 44.2
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 3.3e-66 256.5 318 44.0
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 3.2e-53 213.4 153 70.6
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 2.1e-49 200.7 112 77.7
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 1.3e-41 174.9 351 35.6
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 5.0e-38 162.9 185 52.4
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 1.1e-37 161.8 94 85.1
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 1.9e-37 161.0 131 66.4
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 2.5e-37 160.6 92 85.9
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 3.2e-37 160.2 94 84.0
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 9.3e-37 158.7 131 65.6
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 2.7e-36 157.1 92 83.7
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 7.9e-36 155.6 131 64.1
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 6.9e-32 142.5 97 77.3
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 1.2e-28 131.7 66 90.9
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 4.8e-25 119.8 356 26.7
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 2.4e-24 117.5 133 51.9
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 6.9e-24 115.9 92 68.5
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 5.9e-23 112.8 93 58.1
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 1.0e-22 112.1 92 59.8
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 1.1e-21 108.6 116 54.3
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.1e-20 104.4 56 83.9
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 4.4e-18 96.7 62 74.2
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 3.1e-16 90.5 107 47.7
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 1.0e-14 85.5 242 29.8
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 4.2e-13 80.1 47 83.0
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 4.7e-12 76.6 41 85.4
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 9.7e-10 68.9 44 68.2
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 4.8e-09 66.6 58 55.2
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 1.8e-08 64.7 39 74.4
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 4.1e-08 63.5 33 93.9
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 2.0e-07 61.2 96 39.6


User provided reference genes

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